Wall clock time and date at job start Tue Mar 31 2020 18:55:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50701 * 110.85713 * 2 1 4 4 O 1.21282 * 119.99726 * 239.30067 * 3 2 1 5 5 N 1.34769 * 120.00313 * 59.29464 * 3 2 1 6 6 C 1.48169 * 127.02712 * 0.03172 * 5 3 2 7 7 C 1.55038 * 103.31563 * 140.95234 * 6 5 3 8 8 C 1.54160 * 102.73387 * 36.99306 * 7 6 5 9 9 C 1.47609 * 127.02733 * 179.97438 * 5 3 2 10 10 C 1.52493 * 110.05270 * 97.46785 * 8 7 6 11 11 C 1.53126 * 109.58068 * 181.71911 * 10 8 7 12 12 C 1.53192 * 109.29232 * 299.49721 * 11 10 8 13 13 N 1.46927 * 108.88810 * 55.06964 * 12 11 10 14 14 C 1.36934 * 120.67741 * 125.96197 * 13 12 11 15 15 H 1.08001 * 120.00420 * 332.05163 * 14 13 12 16 16 C 1.38815 * 120.00263 * 152.05005 * 14 13 12 17 17 N 1.31618 * 119.99756 * 343.23375 * 16 14 13 18 18 Si 1.86795 * 120.00101 * 163.22652 * 16 14 13 19 19 H 1.48499 * 109.47327 * 359.97438 * 18 16 14 20 20 H 1.48502 * 109.47291 * 120.00444 * 18 16 14 21 21 H 1.48505 * 109.47439 * 240.00030 * 18 16 14 22 22 C 1.47033 * 118.64555 * 305.98154 * 13 12 11 23 23 C 1.54487 * 110.96963 * 123.78929 * 2 1 3 24 24 N 1.46818 * 105.44772 * 92.76515 * 23 2 1 25 25 C 1.34422 * 111.31322 * 16.96530 * 24 23 2 26 26 O 1.21285 * 124.93994 * 179.58880 * 25 24 23 27 27 C 1.51284 * 110.11901 * 359.62148 * 25 24 23 28 28 H 1.08993 * 109.47523 * 60.70305 * 1 2 3 29 29 H 1.09003 * 109.47112 * 180.70576 * 1 2 3 30 30 H 1.09004 * 109.47111 * 300.70474 * 1 2 3 31 31 H 1.08999 * 110.64748 * 259.41432 * 6 5 3 32 32 H 1.08998 * 110.64886 * 22.32886 * 6 5 3 33 33 H 1.08997 * 110.76092 * 278.67929 * 7 6 5 34 34 H 1.09000 * 110.76200 * 155.30293 * 7 6 5 35 35 H 1.09000 * 109.97048 * 86.02370 * 9 5 3 36 36 H 1.09003 * 110.00492 * 324.77135 * 9 5 3 37 37 H 1.09005 * 109.44632 * 61.69311 * 10 8 7 38 38 H 1.08997 * 109.44933 * 301.75114 * 10 8 7 39 39 H 1.09003 * 109.50349 * 59.44490 * 11 10 8 40 40 H 1.09003 * 109.50109 * 179.55688 * 11 10 8 41 41 H 1.08996 * 109.56822 * 174.88930 * 12 11 10 42 42 H 1.09001 * 109.56872 * 295.25073 * 12 11 10 43 43 H 0.97004 * 119.99717 * 179.97438 * 17 16 14 44 44 H 1.08998 * 109.58448 * 172.57209 * 22 13 12 45 45 H 1.08991 * 109.58397 * 292.85564 * 22 13 12 46 46 H 1.09001 * 110.24233 * 211.74537 * 23 2 1 47 47 H 1.09006 * 110.24025 * 333.73544 * 23 2 1 48 48 H 0.96995 * 124.33471 * 196.99705 * 24 23 2 49 49 H 1.08990 * 110.48575 * 225.07066 * 27 25 24 50 50 H 1.09005 * 110.59490 * 102.47724 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0665 1.4083 0.0000 4 8 2.7835 1.7840 -0.9032 5 7 1.7496 2.2502 1.0035 6 6 0.8933 1.9577 2.1768 7 6 1.6164 2.6879 3.3375 8 6 2.1365 3.9713 2.6600 9 6 2.1854 3.6519 1.1589 10 6 1.1787 5.1278 2.9256 11 6 1.6829 6.3857 2.2127 12 6 3.0702 6.7504 2.7503 13 7 3.9576 5.5886 2.6039 14 6 5.1543 5.7017 1.9480 15 1 5.2772 6.4434 1.1727 16 6 6.2096 4.8631 2.2797 17 7 6.1900 4.1983 3.4155 18 14 7.6575 4.6781 1.1140 19 1 7.4384 5.5251 -0.0859 20 1 8.9034 5.1041 1.8006 21 1 7.7815 3.2572 0.7003 22 6 3.5342 4.3018 3.1757 23 6 2.0828 -0.8023 1.1989 24 7 2.2865 -2.1665 0.6960 25 6 2.2963 -2.1954 -0.6479 26 8 2.4537 -3.1926 -1.3201 27 6 2.0833 -0.8031 -1.1999 28 1 -0.3634 0.5028 -0.8961 29 1 -0.3633 -1.0276 0.0127 30 1 -0.3633 0.5248 0.8836 31 1 -0.1083 2.3628 2.0322 32 1 0.8492 0.8845 2.3625 33 1 2.4442 2.0879 3.7154 34 1 0.9166 2.9298 4.1374 35 1 1.5113 4.3138 0.6155 36 1 3.2030 3.7695 0.7862 37 1 1.1248 5.3153 3.9980 38 1 0.1875 4.8713 2.5518 39 1 1.7461 6.1961 1.1412 40 1 0.9932 7.2095 2.3970 41 1 3.4721 7.5904 2.1837 42 1 2.9941 7.0212 3.8034 43 1 6.9273 3.6120 3.6470 44 1 4.2303 3.5202 2.8714 45 1 3.5174 4.3731 4.2631 46 1 3.0299 -0.3778 1.5321 47 1 1.3614 -0.8045 2.0160 48 1 2.3991 -2.9468 1.2610 49 1 1.3581 -0.8221 -2.0133 50 1 3.0270 -0.3774 -1.5412 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001040308081.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:14 Heat of formation + Delta-G solvation = -68.098526 kcal Electronic energy + Delta-G solvation = -31428.713454 eV Core-core repulsion = 27455.139841 eV Total energy + Delta-G solvation = -3973.573613 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -42.26674 -40.99461 -39.67364 -37.62195 -37.32361 -34.89825 -33.87959 -32.77764 -31.72311 -30.24713 -29.48042 -27.69894 -27.30086 -26.90832 -24.74352 -23.89708 -22.91420 -21.89129 -21.74649 -20.09624 -19.62735 -18.51938 -18.42548 -17.83846 -17.22083 -16.81207 -16.78576 -16.32247 -15.87826 -15.78586 -15.43358 -15.27139 -15.16827 -14.91145 -14.58928 -14.49624 -14.34908 -14.01590 -13.79093 -13.54800 -13.41051 -13.22092 -13.09697 -13.01856 -12.87989 -12.73650 -12.57945 -12.35918 -12.34155 -12.17091 -11.98783 -11.86208 -11.79280 -11.36715 -11.17136 -10.99029 -10.93592 -10.82762 -10.55606 -10.25625 -9.66179 -8.64713 -7.90725 -5.32302 1.35312 1.39997 1.40833 1.47646 1.50468 1.89810 2.28546 2.45417 3.05963 3.14996 3.24753 3.51183 3.65162 3.68722 3.77148 3.88711 3.95363 4.04614 4.26977 4.34084 4.37897 4.43331 4.49005 4.54183 4.58067 4.63569 4.71771 4.77583 4.81759 4.84449 4.90953 4.99609 5.02702 5.04647 5.16341 5.20470 5.20967 5.23492 5.26695 5.44037 5.48459 5.55166 5.60041 5.66712 5.71727 5.81461 5.88064 6.38162 6.59364 7.08135 7.12460 7.15462 7.88853 8.36890 9.14392 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011882 B = 0.004304 C = 0.003540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2355.850259 B = 6504.734812 C = 7907.311698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.080 4.080 3 C 0.537 3.463 4 O -0.589 6.589 5 N -0.612 5.612 6 C 0.095 3.905 7 C -0.121 4.121 8 C -0.086 4.086 9 C 0.134 3.866 10 C -0.087 4.087 11 C -0.130 4.130 12 C 0.137 3.863 13 N -0.610 5.610 14 C -0.252 4.252 15 H 0.057 0.943 16 C -0.041 4.041 17 N -0.927 5.927 18 Si 0.944 3.056 19 H -0.273 1.273 20 H -0.286 1.286 21 H -0.299 1.299 22 C 0.199 3.801 23 C 0.114 3.886 24 N -0.712 5.712 25 C 0.524 3.476 26 O -0.577 6.577 27 C -0.141 4.141 28 H 0.067 0.933 29 H 0.087 0.913 30 H 0.098 0.902 31 H 0.109 0.891 32 H 0.111 0.889 33 H 0.060 0.940 34 H 0.113 0.887 35 H 0.066 0.934 36 H 0.029 0.971 37 H 0.068 0.932 38 H 0.088 0.912 39 H 0.048 0.952 40 H 0.084 0.916 41 H 0.042 0.958 42 H 0.017 0.983 43 H 0.248 0.752 44 H 0.043 0.957 45 H 0.000 1.000 46 H 0.063 0.937 47 H 0.137 0.863 48 H 0.424 0.576 49 H 0.119 0.881 50 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.170 -7.695 2.191 21.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.084 4.084 3 C 0.325 3.675 4 O -0.469 6.469 5 N -0.343 5.343 6 C -0.025 4.025 7 C -0.159 4.159 8 C -0.089 4.089 9 C 0.011 3.989 10 C -0.125 4.125 11 C -0.169 4.169 12 C 0.012 3.988 13 N -0.333 5.333 14 C -0.382 4.382 15 H 0.075 0.925 16 C -0.236 4.236 17 N -0.574 5.574 18 Si 0.774 3.226 19 H -0.197 1.197 20 H -0.213 1.213 21 H -0.227 1.227 22 C 0.074 3.926 23 C -0.011 4.011 24 N -0.367 5.367 25 C 0.311 3.689 26 O -0.458 6.458 27 C -0.181 4.181 28 H 0.086 0.914 29 H 0.105 0.895 30 H 0.116 0.884 31 H 0.127 0.873 32 H 0.129 0.871 33 H 0.079 0.921 34 H 0.132 0.868 35 H 0.084 0.916 36 H 0.048 0.952 37 H 0.087 0.913 38 H 0.106 0.894 39 H 0.066 0.934 40 H 0.103 0.897 41 H 0.061 0.939 42 H 0.035 0.965 43 H 0.057 0.943 44 H 0.062 0.938 45 H 0.018 0.982 46 H 0.082 0.918 47 H 0.155 0.845 48 H 0.265 0.735 49 H 0.138 0.862 50 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -19.577 -8.025 1.301 21.198 hybrid contribution 2.189 -0.043 -0.506 2.247 sum -17.388 -8.068 0.796 19.185 Atomic orbital electron populations 1.21993 0.87690 1.04741 1.04894 1.21600 1.00279 0.89910 0.96570 1.20279 0.79592 0.87000 0.80583 1.90722 1.39798 1.78306 1.38118 1.48928 1.49137 1.12707 1.23556 1.23140 0.94499 1.02454 0.82451 1.22769 1.00520 0.94587 0.98049 1.21624 0.97381 0.96871 0.93008 1.21839 0.98663 0.81470 0.96892 1.21386 0.97609 0.92779 1.00704 1.21974 0.96488 0.98826 0.99564 1.21096 0.91087 0.89466 0.97157 1.44325 1.18032 1.05595 1.65342 1.19408 0.89467 1.17745 1.11619 0.92515 1.25494 0.99172 1.01788 0.97187 1.70129 1.32664 1.32834 1.21757 0.85547 0.80594 0.76940 0.79530 1.19720 1.21268 1.22677 1.20508 0.91413 0.87581 0.93145 1.22351 1.02356 0.80435 0.95924 1.46099 1.72896 1.10933 1.06790 1.20921 0.74289 0.90308 0.83373 1.90732 1.52432 1.38669 1.63929 1.22355 1.04913 0.91854 0.98993 0.91389 0.89455 0.88386 0.87345 0.87124 0.92103 0.86849 0.91579 0.95179 0.91299 0.89382 0.93363 0.89747 0.93889 0.96469 0.94317 0.93846 0.98216 0.91835 0.84530 0.73489 0.86236 0.88671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 8.23 71.98 0.59 -0.92 16 2 C -0.08 -1.54 0.60 -51.87 -0.03 -1.57 16 3 C 0.54 15.74 6.57 87.66 0.58 16.32 16 4 O -0.59 -24.15 15.88 -3.04 -0.05 -24.20 16 5 N -0.61 -16.08 3.29 -809.65 -2.67 -18.75 16 6 C 0.10 1.42 5.18 86.76 0.45 1.86 16 7 C -0.12 -2.49 6.15 31.68 0.19 -2.29 16 8 C -0.09 -2.62 0.61 -51.90 -0.03 -2.65 16 9 C 0.13 4.53 5.57 86.35 0.48 5.02 16 10 C -0.09 -2.13 4.40 30.47 0.13 -2.00 16 11 C -0.13 -3.76 5.87 30.70 0.18 -3.58 16 12 C 0.14 5.37 6.50 86.36 0.56 5.93 16 13 N -0.61 -29.56 2.76 -699.97 -1.93 -31.49 16 14 C -0.25 -14.04 9.59 84.03 0.81 -13.23 16 15 H 0.06 3.18 7.88 -2.91 -0.02 3.16 16 16 C -0.04 -2.32 4.92 84.86 0.42 -1.90 16 17 N -0.93 -54.73 11.19 21.65 0.24 -54.49 16 18 Si 0.94 47.39 29.59 68.60 2.03 49.42 16 19 H -0.27 -13.32 7.11 99.48 0.71 -12.62 16 20 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 21 H -0.30 -15.42 7.11 99.48 0.71 -14.71 16 22 C 0.20 8.81 3.58 86.15 0.31 9.12 16 23 C 0.11 1.75 5.90 86.82 0.51 2.26 16 24 N -0.71 -12.28 6.24 -459.66 -2.87 -15.14 16 25 C 0.52 13.08 8.43 87.90 0.74 13.82 16 26 O -0.58 -19.14 18.03 -3.05 -0.05 -19.20 16 27 C -0.14 -3.35 5.75 30.59 0.18 -3.18 16 28 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.10 0.63 5.35 -2.38 -0.01 0.62 16 31 H 0.11 0.99 8.00 -2.39 -0.02 0.97 16 32 H 0.11 0.92 4.34 -2.39 -0.01 0.91 16 33 H 0.06 1.49 7.84 -2.39 -0.02 1.47 16 34 H 0.11 1.62 7.83 -2.39 -0.02 1.60 16 35 H 0.07 2.12 6.54 -2.39 -0.02 2.10 16 36 H 0.03 1.40 7.52 -2.39 -0.02 1.38 16 37 H 0.07 1.61 8.14 -2.38 -0.02 1.59 16 38 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.05 1.52 6.65 -2.39 -0.02 1.50 16 40 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 41 H 0.04 1.72 7.93 -2.39 -0.02 1.70 16 42 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 43 H 0.25 14.26 8.31 -92.71 -0.77 13.49 16 44 H 0.04 2.30 6.08 -2.39 -0.01 2.29 16 45 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 46 H 0.06 1.28 7.88 -2.39 -0.02 1.26 16 47 H 0.14 0.91 6.34 -2.38 -0.02 0.89 16 48 H 0.42 5.52 8.96 -92.71 -0.83 4.69 16 49 H 0.12 2.49 7.91 -2.39 -0.02 2.47 16 50 H 0.10 2.86 7.01 -2.38 -0.02 2.85 16 Total: -1.00 -81.84 375.56 0.90 -80.94 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: 0.13 Total: 9.90 kcal Atomic # 6 Polarization: 16.95 SS G_CDS: 6.07 Total: 23.01 kcal Atomic # 7 Polarization: -112.65 SS G_CDS: -7.23 Total: -119.87 kcal Atomic # 8 Polarization: -43.29 SS G_CDS: -0.10 Total: -43.40 kcal Atomic # 14 Polarization: 47.39 SS G_CDS: 2.03 Total: 49.42 kcal Total: -81.84 0.90 -80.94 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040308081.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.844 kcal (2) G-P(sol) polarization free energy of solvation -81.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds