Wall clock time and date at job start Tue Mar 31 2020 18:55:24
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 C 1.50696 * 110.85467 * 2 1
4 4 O 1.21279 * 120.00224 * 239.16248 * 3 2 1
5 5 N 1.34780 * 120.00129 * 59.16554 * 3 2 1
6 6 C 1.48163 * 127.02043 * 5.18411 * 5 3 2
7 7 C 1.55042 * 103.31187 * 140.98834 * 6 5 3
8 8 C 1.54174 * 102.72746 * 37.00569 * 7 6 5
9 9 C 1.47618 * 127.02773 * 185.18024 * 5 3 2
10 10 C 1.52493 * 110.02538 * 219.30804 * 8 7 6
11 11 C 1.53130 * 109.61173 * 298.38817 * 10 8 7
12 12 C 1.53194 * 109.29378 * 299.49681 * 11 10 8
13 13 N 1.46928 * 108.88525 * 55.07520 * 12 11 10
14 14 C 1.36938 * 120.68276 * 125.95193 * 13 12 11
15 15 H 1.08003 * 119.99375 * 332.96842 * 14 13 12
16 16 C 1.38801 * 120.00231 * 152.97127 * 14 13 12
17 17 N 1.31615 * 120.00438 * 344.07219 * 16 14 13
18 18 Si 1.86811 * 120.00015 * 164.07588 * 16 14 13
19 19 H 1.48498 * 109.46837 * 59.99670 * 18 16 14
20 20 H 1.48499 * 109.46947 * 180.02562 * 18 16 14
21 21 H 1.48502 * 109.46555 * 299.99776 * 18 16 14
22 22 C 1.47037 * 118.63832 * 305.96509 * 13 12 11
23 23 C 1.54478 * 110.97045 * 123.78711 * 2 1 3
24 24 N 1.46769 * 105.47270 * 143.57159 * 23 2 1
25 25 C 1.34419 * 111.30070 * 342.98905 * 24 23 2
26 26 O 1.21282 * 124.93903 * 180.44226 * 25 24 23
27 27 C 1.51281 * 110.11513 * 0.40229 * 25 24 23
28 28 H 1.09005 * 109.47127 * 53.60120 * 1 2 3
29 29 H 1.09005 * 109.47017 * 173.59777 * 1 2 3
30 30 H 1.09000 * 109.47725 * 293.59669 * 1 2 3
31 31 H 1.08998 * 110.64320 * 259.43992 * 6 5 3
32 32 H 1.08999 * 110.65328 * 22.52740 * 6 5 3
33 33 H 1.08998 * 110.75450 * 278.69788 * 7 6 5
34 34 H 1.08994 * 110.76093 * 155.32012 * 7 6 5
35 35 H 1.08997 * 109.96758 * 85.96091 * 9 5 3
36 36 H 1.08999 * 109.96501 * 324.69677 * 9 5 3
37 37 H 1.08999 * 109.44601 * 178.34592 * 10 8 7
38 38 H 1.08993 * 109.44348 * 58.43129 * 10 8 7
39 39 H 1.09002 * 109.50052 * 59.43870 * 11 10 8
40 40 H 1.08998 * 109.50100 * 179.51653 * 11 10 8
41 41 H 1.08996 * 109.56458 * 174.89550 * 12 11 10
42 42 H 1.09002 * 109.56797 * 295.13322 * 12 11 10
43 43 H 0.96997 * 120.00312 * 179.97438 * 17 16 14
44 44 H 1.08996 * 109.57965 * 172.58535 * 22 13 12
45 45 H 1.08996 * 109.58353 * 292.86194 * 22 13 12
46 46 H 1.08996 * 110.25009 * 262.57832 * 23 2 1
47 47 H 1.09009 * 110.24498 * 24.49131 * 23 2 1
48 48 H 0.96994 * 124.34795 * 163.00412 * 24 23 2
49 49 H 1.08995 * 110.49088 * 257.57508 * 27 25 24
50 50 H 1.08999 * 110.48474 * 134.93312 * 27 25 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0665 1.4082 0.0000
4 8 2.7855 1.7833 -0.9018
5 7 1.7473 2.2510 1.0022
6 6 0.9765 1.9302 2.2262
7 6 1.7090 2.7349 3.3306
8 6 2.1035 4.0337 2.5994
9 6 2.0944 3.6821 1.1048
10 6 3.4973 4.4744 3.0333
11 6 3.4999 4.7642 4.5370
12 6 2.5031 5.8880 4.8376
13 7 1.1860 5.5097 4.3078
14 6 0.0805 5.5130 5.1159
15 1 0.1887 5.3596 6.1795
16 6 -1.1791 5.7136 4.5682
17 7 -1.2977 6.2054 3.3532
18 14 -2.7060 5.2854 5.5557
19 1 -2.7270 6.0856 6.8064
20 1 -3.9168 5.5902 4.7518
21 1 -2.6876 3.8394 5.8933
22 6 1.0792 5.1271 2.8921
23 6 2.0828 -0.8022 1.1988
24 7 3.2857 -1.4771 0.6971
25 6 3.3097 -1.4971 -0.6467
26 8 4.1860 -1.9991 -1.3184
27 6 2.0842 -0.8033 -1.1994
28 1 -0.3634 0.6098 -0.8272
29 1 -0.3633 -1.0213 -0.1146
30 1 -0.3634 0.4114 0.9417
31 1 -0.0565 2.2641 2.1283
32 1 1.0178 0.8617 2.4376
33 1 2.5947 2.2008 3.6745
34 1 1.0379 2.9484 4.1625
35 1 1.3489 4.2841 0.5852
36 1 3.0806 3.8577 0.6750
37 1 3.7784 5.3762 2.4895
38 1 4.2128 3.6817 2.8153
39 1 3.2099 3.8654 5.0812
40 1 4.4990 5.0708 4.8467
41 1 2.4344 6.0362 5.9153
42 1 2.8385 6.8101 4.3629
43 1 -2.1779 6.3452 2.9704
44 1 0.0761 4.7516 2.6899
45 1 1.2782 5.9948 2.2632
46 1 2.3412 -0.1290 2.0162
47 1 1.3488 -1.5357 1.5326
48 1 3.9747 -1.8597 1.2625
49 1 1.3519 -1.5356 -1.5391
50 1 2.3600 -0.1325 -2.0130
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001040308083.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 18:55:24
Heat of formation + Delta-G solvation = -43.538208 kcal
Electronic energy + Delta-G solvation = -31326.136693 eV
Core-core repulsion = 27353.628095 eV
Total energy + Delta-G solvation = -3972.508598 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 335.200 amu
Computer time = 1.10 seconds
Orbital eigenvalues (eV)
-41.32418 -39.75307 -38.38255 -36.55836 -35.88249 -33.37766 -32.96515 -31.27070
-30.03929 -29.35898 -28.57118 -26.56475 -25.78497 -25.42229 -23.50685 -22.26674
-21.98030 -20.85399 -20.52796 -19.13371 -18.13830 -17.42492 -16.99958 -16.56851
-16.18952 -15.78406 -15.27423 -15.09358 -14.78905 -14.25823 -14.09226 -14.07225
-13.74351 -13.65693 -13.56020 -13.12998 -13.10560 -12.85886 -12.58033 -12.51808
-12.29496 -12.21407 -11.94777 -11.72283 -11.65909 -11.31483 -11.16846 -11.02099
-10.99229 -10.73565 -10.46630 -10.23464 -10.12872 -10.00451 -9.89450 -9.87433
-9.60201 -9.46307 -9.32273 -8.56340 -8.53717 -6.76216 -5.87510 -3.29830
2.43138 2.58014 2.94518 3.11389 3.29914 3.37001 3.37494 3.93203
4.09828 4.21268 4.40420 4.51546 4.80736 4.85954 4.98389 5.08425
5.13058 5.16462 5.28871 5.34212 5.37238 5.43861 5.49844 5.53905
5.59631 5.61705 5.69047 5.76553 5.84236 5.97212 5.99165 6.07647
6.17309 6.24564 6.29255 6.38423 6.44791 6.53615 6.57822 6.71488
6.75791 6.77973 6.87486 6.94328 7.24396 7.54706 7.63574 7.70233
8.04777 8.15458 8.35127 9.12293 9.75516 10.32665 11.20595
Molecular weight = 335.20amu
Principal moments of inertia in cm(-1)
A = 0.015978 B = 0.003572 C = 0.003239
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1752.034741 B = 7836.248260 C = 8641.530877
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.139 4.139
2 C -0.092 4.092
3 C 0.542 3.458
4 O -0.540 6.540
5 N -0.610 5.610
6 C 0.090 3.910
7 C -0.113 4.113
8 C -0.093 4.093
9 C 0.117 3.883
10 C -0.094 4.094
11 C -0.133 4.133
12 C 0.144 3.856
13 N -0.589 5.589
14 C -0.251 4.251
15 H 0.066 0.934
16 C 0.004 3.996
17 N -0.903 5.903
18 Si 0.900 3.100
19 H -0.283 1.283
20 H -0.291 1.291
21 H -0.284 1.284
22 C 0.187 3.813
23 C 0.107 3.893
24 N -0.733 5.733
25 C 0.526 3.474
26 O -0.534 6.534
27 C -0.140 4.140
28 H 0.071 0.929
29 H 0.073 0.927
30 H 0.075 0.925
31 H 0.081 0.919
32 H 0.076 0.924
33 H 0.059 0.941
34 H 0.101 0.899
35 H 0.071 0.929
36 H 0.070 0.930
37 H 0.055 0.945
38 H 0.045 0.955
39 H 0.059 0.941
40 H 0.049 0.951
41 H 0.052 0.948
42 H 0.016 0.984
43 H 0.255 0.745
44 H 0.094 0.906
45 H 0.019 0.981
46 H 0.090 0.910
47 H 0.087 0.913
48 H 0.411 0.589
49 H 0.112 0.888
50 H 0.120 0.880
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.117 -12.810 -2.056 13.343
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.197 4.197
2 C -0.096 4.096
3 C 0.329 3.671
4 O -0.417 6.417
5 N -0.343 5.343
6 C -0.032 4.032
7 C -0.152 4.152
8 C -0.095 4.095
9 C -0.005 4.005
10 C -0.132 4.132
11 C -0.172 4.172
12 C 0.017 3.983
13 N -0.311 5.311
14 C -0.381 4.381
15 H 0.083 0.917
16 C -0.194 4.194
17 N -0.547 5.547
18 Si 0.729 3.271
19 H -0.209 1.209
20 H -0.217 1.217
21 H -0.210 1.210
22 C 0.061 3.939
23 C -0.017 4.017
24 N -0.389 5.389
25 C 0.313 3.687
26 O -0.410 6.410
27 C -0.180 4.180
28 H 0.090 0.910
29 H 0.092 0.908
30 H 0.094 0.906
31 H 0.099 0.901
32 H 0.094 0.906
33 H 0.077 0.923
34 H 0.119 0.881
35 H 0.089 0.911
36 H 0.089 0.911
37 H 0.074 0.926
38 H 0.064 0.936
39 H 0.077 0.923
40 H 0.067 0.933
41 H 0.070 0.930
42 H 0.034 0.966
43 H 0.065 0.935
44 H 0.112 0.888
45 H 0.037 0.963
46 H 0.108 0.892
47 H 0.105 0.895
48 H 0.250 0.750
49 H 0.130 0.870
50 H 0.138 0.862
Dipole moment (debyes) X Y Z Total
from point charges 3.722 -12.810 -3.124 13.701
hybrid contribution -0.605 -0.183 0.853 1.061
sum 3.117 -12.993 -2.271 13.553
Atomic orbital electron populations
1.21889 0.90151 1.03432 1.04200 1.21666 0.98493 0.92871 0.96571
1.19616 0.80427 0.85872 0.81167 1.90708 1.37290 1.77353 1.36348
1.48811 1.53775 1.11166 1.20526 1.22935 0.96485 0.99778 0.84027
1.22690 1.00083 0.94637 0.97741 1.21845 0.98116 0.97947 0.91627
1.22152 1.01080 0.79841 0.97470 1.21378 0.95162 0.99951 0.96718
1.22028 0.98809 1.00779 0.95623 1.20910 0.86450 0.93532 0.97377
1.44024 1.02973 1.76817 1.07294 1.19137 0.84735 1.43095 0.91120
0.91672 1.25001 0.98031 0.99370 0.97045 1.69993 1.22648 1.46168
1.15921 0.86417 0.82772 0.78442 0.79424 1.20948 1.21655 1.21006
1.20779 0.96803 0.91658 0.84688 1.22348 0.87452 0.95946 0.96003
1.46200 1.24743 1.60127 1.07823 1.20827 0.87192 0.78215 0.82461
1.90746 1.40233 1.47251 1.62807 1.22408 0.96583 1.00113 0.98883
0.90994 0.90840 0.90582 0.90084 0.90601 0.92263 0.88054 0.91054
0.91142 0.92593 0.93640 0.92251 0.93267 0.92957 0.96560 0.93527
0.88840 0.96335 0.89216 0.89521 0.75006 0.86977 0.86199
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.07 8.25 37.16 0.31 -0.76 16
2 C -0.09 -0.92 0.60 -154.03 -0.09 -1.02 16
3 C 0.54 7.66 6.64 -10.99 -0.07 7.59 16
4 O -0.54 -9.75 15.83 5.56 0.09 -9.66 16
5 N -0.61 -8.45 3.26 -169.84 -0.55 -9.01 16
6 C 0.09 1.10 4.90 -2.05 -0.01 1.09 16
7 C -0.11 -1.64 5.00 -25.04 -0.13 -1.77 16
8 C -0.09 -1.52 0.63 -154.05 -0.10 -1.61 16
9 C 0.12 1.85 6.30 -3.15 -0.02 1.83 16
10 C -0.09 -1.47 4.33 -26.92 -0.12 -1.59 16
11 C -0.13 -2.10 5.89 -26.56 -0.16 -2.26 16
12 C 0.14 2.77 6.50 -3.71 -0.02 2.74 16
13 N -0.59 -13.16 2.51 -172.56 -0.43 -13.60 16
14 C -0.25 -6.23 9.60 -15.06 -0.14 -6.37 16
15 H 0.07 1.60 7.88 -52.48 -0.41 1.19 16
16 C 0.00 0.10 4.96 -17.44 -0.09 0.02 16
17 N -0.90 -24.11 11.07 55.49 0.61 -23.49 16
18 Si 0.90 19.96 29.58 -169.99 -5.03 14.93 16
19 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16
20 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16
21 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16
22 C 0.19 3.91 3.65 -3.92 -0.01 3.90 16
23 C 0.11 0.88 5.89 -3.12 -0.02 0.86 16
24 N -0.73 -7.27 6.24 -59.20 -0.37 -7.64 16
25 C 0.53 6.88 8.43 -10.86 -0.09 6.79 16
26 O -0.53 -9.13 18.03 5.56 0.10 -9.03 16
27 C -0.14 -1.51 5.78 -26.74 -0.15 -1.66 16
28 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16
29 H 0.07 0.40 8.00 -51.93 -0.42 -0.02 16
30 H 0.08 0.57 5.84 -51.93 -0.30 0.27 16
31 H 0.08 1.05 7.99 -51.93 -0.42 0.64 16
32 H 0.08 0.69 4.59 -51.93 -0.24 0.45 16
33 H 0.06 0.79 7.63 -51.93 -0.40 0.39 16
34 H 0.10 1.72 7.48 -51.93 -0.39 1.33 16
35 H 0.07 1.20 7.67 -51.93 -0.40 0.80 16
36 H 0.07 1.16 7.55 -51.93 -0.39 0.77 16
37 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16
38 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16
39 H 0.06 0.94 7.13 -51.93 -0.37 0.57 16
40 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16
41 H 0.05 0.99 7.93 -51.93 -0.41 0.58 16
42 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16
43 H 0.25 6.67 8.31 -40.82 -0.34 6.33 16
44 H 0.09 2.18 5.98 -51.93 -0.31 1.87 16
45 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16
46 H 0.09 0.75 5.80 -51.93 -0.30 0.44 16
47 H 0.09 0.48 7.89 -51.92 -0.41 0.07 16
48 H 0.41 3.43 8.96 -40.82 -0.37 3.07 16
49 H 0.11 0.88 7.80 -51.93 -0.40 0.48 16
50 H 0.12 1.53 6.97 -51.93 -0.36 1.17 16
LS Contribution 375.44 15.07 5.66 5.66
Total: -1.00 -31.63 375.44 -8.81 -40.44
By element:
Atomic # 1 Polarization: 11.59 SS G_CDS: -7.97 Total: 3.63 kcal
Atomic # 6 Polarization: 8.69 SS G_CDS: -0.92 Total: 7.78 kcal
Atomic # 7 Polarization: -52.99 SS G_CDS: -0.74 Total: -53.74 kcal
Atomic # 8 Polarization: -18.88 SS G_CDS: 0.19 Total: -18.69 kcal
Atomic # 14 Polarization: 19.96 SS G_CDS: -5.03 Total: 14.93 kcal
Total LS contribution 5.66 Total: 5.66 kcal
Total: -31.63 -8.81 -40.44 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001040308083.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -3.099 kcal
(2) G-P(sol) polarization free energy of solvation -31.627 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.727 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.812 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.439 kcal
(6) G-S(sol) free energy of system = (1) + (5) -43.538 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.10 seconds