Wall clock time and date at job start Tue Mar 31 2020 18:55:22
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 C 1.50696 * 110.85467 * 2 1
4 4 O 1.21279 * 120.00224 * 239.16248 * 3 2 1
5 5 N 1.34780 * 120.00129 * 59.16554 * 3 2 1
6 6 C 1.48163 * 127.02043 * 5.18411 * 5 3 2
7 7 C 1.55042 * 103.31187 * 140.98834 * 6 5 3
8 8 C 1.54174 * 102.72746 * 37.00569 * 7 6 5
9 9 C 1.47618 * 127.02773 * 185.18024 * 5 3 2
10 10 C 1.52493 * 110.02538 * 219.30804 * 8 7 6
11 11 C 1.53130 * 109.61173 * 298.38817 * 10 8 7
12 12 C 1.53194 * 109.29378 * 299.49681 * 11 10 8
13 13 N 1.46928 * 108.88525 * 55.07520 * 12 11 10
14 14 C 1.36938 * 120.68276 * 125.95193 * 13 12 11
15 15 H 1.08003 * 119.99375 * 332.96842 * 14 13 12
16 16 C 1.38801 * 120.00231 * 152.97127 * 14 13 12
17 17 N 1.31615 * 120.00438 * 344.07219 * 16 14 13
18 18 Si 1.86811 * 120.00015 * 164.07588 * 16 14 13
19 19 H 1.48498 * 109.46837 * 59.99670 * 18 16 14
20 20 H 1.48499 * 109.46947 * 180.02562 * 18 16 14
21 21 H 1.48502 * 109.46555 * 299.99776 * 18 16 14
22 22 C 1.47037 * 118.63832 * 305.96509 * 13 12 11
23 23 C 1.54478 * 110.97045 * 123.78711 * 2 1 3
24 24 N 1.46769 * 105.47270 * 143.57159 * 23 2 1
25 25 C 1.34419 * 111.30070 * 342.98905 * 24 23 2
26 26 O 1.21282 * 124.93903 * 180.44226 * 25 24 23
27 27 C 1.51281 * 110.11513 * 0.40229 * 25 24 23
28 28 H 1.09005 * 109.47127 * 53.60120 * 1 2 3
29 29 H 1.09005 * 109.47017 * 173.59777 * 1 2 3
30 30 H 1.09000 * 109.47725 * 293.59669 * 1 2 3
31 31 H 1.08998 * 110.64320 * 259.43992 * 6 5 3
32 32 H 1.08999 * 110.65328 * 22.52740 * 6 5 3
33 33 H 1.08998 * 110.75450 * 278.69788 * 7 6 5
34 34 H 1.08994 * 110.76093 * 155.32012 * 7 6 5
35 35 H 1.08997 * 109.96758 * 85.96091 * 9 5 3
36 36 H 1.08999 * 109.96501 * 324.69677 * 9 5 3
37 37 H 1.08999 * 109.44601 * 178.34592 * 10 8 7
38 38 H 1.08993 * 109.44348 * 58.43129 * 10 8 7
39 39 H 1.09002 * 109.50052 * 59.43870 * 11 10 8
40 40 H 1.08998 * 109.50100 * 179.51653 * 11 10 8
41 41 H 1.08996 * 109.56458 * 174.89550 * 12 11 10
42 42 H 1.09002 * 109.56797 * 295.13322 * 12 11 10
43 43 H 0.96997 * 120.00312 * 179.97438 * 17 16 14
44 44 H 1.08996 * 109.57965 * 172.58535 * 22 13 12
45 45 H 1.08996 * 109.58353 * 292.86194 * 22 13 12
46 46 H 1.08996 * 110.25009 * 262.57832 * 23 2 1
47 47 H 1.09009 * 110.24498 * 24.49131 * 23 2 1
48 48 H 0.96994 * 124.34795 * 163.00412 * 24 23 2
49 49 H 1.08995 * 110.49088 * 257.57508 * 27 25 24
50 50 H 1.08999 * 110.48474 * 134.93312 * 27 25 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0665 1.4082 0.0000
4 8 2.7855 1.7833 -0.9018
5 7 1.7473 2.2510 1.0022
6 6 0.9765 1.9302 2.2262
7 6 1.7090 2.7349 3.3306
8 6 2.1035 4.0337 2.5994
9 6 2.0944 3.6821 1.1048
10 6 3.4973 4.4744 3.0333
11 6 3.4999 4.7642 4.5370
12 6 2.5031 5.8880 4.8376
13 7 1.1860 5.5097 4.3078
14 6 0.0805 5.5130 5.1159
15 1 0.1887 5.3596 6.1795
16 6 -1.1791 5.7136 4.5682
17 7 -1.2977 6.2054 3.3532
18 14 -2.7060 5.2854 5.5557
19 1 -2.7270 6.0856 6.8064
20 1 -3.9168 5.5902 4.7518
21 1 -2.6876 3.8394 5.8933
22 6 1.0792 5.1271 2.8921
23 6 2.0828 -0.8022 1.1988
24 7 3.2857 -1.4771 0.6971
25 6 3.3097 -1.4971 -0.6467
26 8 4.1860 -1.9991 -1.3184
27 6 2.0842 -0.8033 -1.1994
28 1 -0.3634 0.6098 -0.8272
29 1 -0.3633 -1.0213 -0.1146
30 1 -0.3634 0.4114 0.9417
31 1 -0.0565 2.2641 2.1283
32 1 1.0178 0.8617 2.4376
33 1 2.5947 2.2008 3.6745
34 1 1.0379 2.9484 4.1625
35 1 1.3489 4.2841 0.5852
36 1 3.0806 3.8577 0.6750
37 1 3.7784 5.3762 2.4895
38 1 4.2128 3.6817 2.8153
39 1 3.2099 3.8654 5.0812
40 1 4.4990 5.0708 4.8467
41 1 2.4344 6.0362 5.9153
42 1 2.8385 6.8101 4.3629
43 1 -2.1779 6.3452 2.9704
44 1 0.0761 4.7516 2.6899
45 1 1.2782 5.9948 2.2632
46 1 2.3412 -0.1290 2.0162
47 1 1.3488 -1.5357 1.5326
48 1 3.9747 -1.8597 1.2625
49 1 1.3519 -1.5356 -1.5391
50 1 2.3600 -0.1325 -2.0130
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001040308083.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 18:55:22
Heat of formation + Delta-G solvation = -65.345403 kcal
Electronic energy + Delta-G solvation = -31327.082324 eV
Core-core repulsion = 27353.628095 eV
Total energy + Delta-G solvation = -3973.454229 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 335.200 amu
Computer time = 1.29 seconds
Orbital eigenvalues (eV)
-42.30453 -40.94887 -39.63550 -37.58059 -37.30246 -34.90734 -33.97773 -32.66304
-31.68630 -30.53587 -29.46176 -27.43321 -27.22145 -26.88287 -24.67726 -23.89112
-23.01538 -21.99831 -21.68624 -20.21730 -19.53310 -18.55902 -18.25592 -17.88357
-17.25302 -16.98407 -16.63075 -16.19454 -16.04245 -15.70153 -15.42245 -15.20364
-15.06653 -14.90815 -14.54803 -14.33924 -14.30331 -14.06885 -13.73733 -13.59829
-13.39703 -13.26046 -13.10916 -12.92919 -12.85607 -12.62407 -12.61527 -12.42398
-12.34037 -12.13524 -12.01702 -11.79230 -11.62415 -11.30847 -11.18894 -11.01957
-10.97934 -10.89869 -10.45400 -10.15984 -9.74256 -8.61151 -7.79440 -5.24384
1.43861 1.52661 1.54118 1.55394 1.62087 1.84835 2.35138 2.57807
3.11886 3.24478 3.33060 3.35709 3.59163 3.72596 3.75174 3.88300
3.98481 4.12023 4.27595 4.29963 4.38616 4.43332 4.51945 4.53982
4.60223 4.64431 4.70034 4.72830 4.77181 4.82422 4.85581 4.93325
4.95374 5.01015 5.07360 5.15024 5.21287 5.28296 5.31610 5.38222
5.44818 5.52834 5.66790 5.72108 5.75158 5.82218 5.92142 6.45584
6.52689 7.02652 7.16088 7.22148 7.92895 8.45740 9.26316
Molecular weight = 335.20amu
Principal moments of inertia in cm(-1)
A = 0.015978 B = 0.003572 C = 0.003239
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1752.034741 B = 7836.248260 C = 8641.530877
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.137 4.137
2 C -0.084 4.084
3 C 0.536 3.464
4 O -0.586 6.586
5 N -0.607 5.607
6 C 0.096 3.904
7 C -0.107 4.107
8 C -0.085 4.085
9 C 0.121 3.879
10 C -0.092 4.092
11 C -0.120 4.120
12 C 0.137 3.863
13 N -0.603 5.603
14 C -0.254 4.254
15 H 0.068 0.932
16 C -0.044 4.044
17 N -0.935 5.935
18 Si 0.960 3.040
19 H -0.284 1.284
20 H -0.300 1.300
21 H -0.268 1.268
22 C 0.202 3.798
23 C 0.107 3.893
24 N -0.722 5.722
25 C 0.516 3.484
26 O -0.586 6.586
27 C -0.136 4.136
28 H 0.059 0.941
29 H 0.108 0.892
30 H 0.082 0.918
31 H 0.073 0.927
32 H 0.120 0.880
33 H 0.082 0.918
34 H 0.079 0.921
35 H 0.051 0.949
36 H 0.063 0.937
37 H 0.045 0.955
38 H 0.066 0.934
39 H 0.067 0.933
40 H 0.075 0.925
41 H 0.053 0.947
42 H 0.004 0.996
43 H 0.248 0.752
44 H 0.067 0.933
45 H -0.020 1.020
46 H 0.096 0.904
47 H 0.132 0.868
48 H 0.419 0.581
49 H 0.147 0.853
50 H 0.093 0.907
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.728 -15.730 -0.153 15.966
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.194 4.194
2 C -0.088 4.088
3 C 0.326 3.674
4 O -0.467 6.467
5 N -0.338 5.338
6 C -0.026 4.026
7 C -0.145 4.145
8 C -0.087 4.087
9 C -0.002 4.002
10 C -0.130 4.130
11 C -0.158 4.158
12 C 0.012 3.988
13 N -0.326 5.326
14 C -0.384 4.384
15 H 0.085 0.915
16 C -0.239 4.239
17 N -0.582 5.582
18 Si 0.789 3.211
19 H -0.211 1.211
20 H -0.227 1.227
21 H -0.194 1.194
22 C 0.076 3.924
23 C -0.017 4.017
24 N -0.376 5.376
25 C 0.304 3.696
26 O -0.467 6.467
27 C -0.177 4.177
28 H 0.078 0.922
29 H 0.127 0.873
30 H 0.101 0.899
31 H 0.091 0.909
32 H 0.137 0.863
33 H 0.100 0.900
34 H 0.098 0.902
35 H 0.069 0.931
36 H 0.081 0.919
37 H 0.064 0.936
38 H 0.084 0.916
39 H 0.086 0.914
40 H 0.094 0.906
41 H 0.072 0.928
42 H 0.022 0.978
43 H 0.057 0.943
44 H 0.085 0.915
45 H -0.002 1.002
46 H 0.114 0.886
47 H 0.149 0.851
48 H 0.259 0.741
49 H 0.165 0.835
50 H 0.112 0.888
Dipole moment (debyes) X Y Z Total
from point charges 3.332 -15.739 -1.148 16.128
hybrid contribution -0.448 0.863 0.279 1.012
sum 2.884 -14.875 -0.868 15.177
Atomic orbital electron populations
1.21949 0.87779 1.05541 1.04131 1.21683 1.00036 0.89762 0.97301
1.20483 0.79485 0.87397 0.80078 1.90695 1.39400 1.78583 1.37988
1.48828 1.53684 1.10072 1.21235 1.23009 0.95374 1.01975 0.82195
1.22598 1.00720 0.93765 0.97436 1.21601 0.97284 0.97522 0.92288
1.21912 1.00042 0.81443 0.96840 1.21369 0.94788 1.00218 0.96616
1.21887 0.98896 0.99481 0.95570 1.21066 0.85978 0.94579 0.97178
1.44259 1.03647 1.77194 1.07471 1.19430 0.85617 1.41850 0.91527
0.91459 1.25656 1.00510 0.99840 0.97913 1.70169 1.22549 1.47915
1.17545 0.85461 0.79179 0.78804 0.77701 1.21052 1.22664 1.19376
1.20468 0.96823 0.91530 0.83602 1.22621 0.87510 0.96739 0.94795
1.46212 1.25435 1.59074 1.06924 1.21223 0.87191 0.77833 0.83382
1.90714 1.42139 1.49701 1.64139 1.22425 0.96568 1.00274 0.98390
0.92183 0.87347 0.89934 0.90877 0.86257 0.89967 0.90197 0.93094
0.91899 0.93597 0.91584 0.91436 0.90647 0.92821 0.97821 0.94292
0.91501 1.00207 0.88600 0.85064 0.74068 0.83550 0.88818
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.55 8.25 71.98 0.59 -0.95 16
2 C -0.08 -1.43 0.60 -51.87 -0.03 -1.46 16
3 C 0.54 14.50 6.64 87.66 0.58 15.09 16
4 O -0.59 -21.45 15.83 -3.03 -0.05 -21.50 16
5 N -0.61 -16.03 3.26 -809.65 -2.64 -18.67 16
6 C 0.10 2.08 4.90 86.76 0.43 2.50 16
7 C -0.11 -2.86 5.00 31.69 0.16 -2.70 16
8 C -0.08 -2.74 0.63 -51.88 -0.03 -2.77 16
9 C 0.12 3.90 6.30 86.35 0.54 4.44 16
10 C -0.09 -2.76 4.33 30.47 0.13 -2.62 16
11 C -0.12 -3.52 5.89 30.70 0.18 -3.34 16
12 C 0.14 5.25 6.50 86.36 0.56 5.81 16
13 N -0.60 -27.31 2.51 -699.85 -1.76 -29.07 16
14 C -0.25 -12.65 9.60 84.03 0.81 -11.84 16
15 H 0.07 3.27 7.88 -2.91 -0.02 3.24 16
16 C -0.04 -2.24 4.96 84.86 0.42 -1.82 16
17 N -0.94 -51.62 11.07 21.65 0.24 -51.38 16
18 Si 0.96 41.04 29.58 68.60 2.03 43.07 16
19 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16
20 H -0.30 -13.20 7.11 99.48 0.71 -12.49 16
21 H -0.27 -10.71 7.11 99.48 0.71 -10.00 16
22 C 0.20 8.76 3.65 86.16 0.31 9.07 16
23 C 0.11 1.24 5.89 86.83 0.51 1.75 16
24 N -0.72 -12.09 6.24 -459.79 -2.87 -14.96 16
25 C 0.52 12.75 8.43 87.90 0.74 13.49 16
26 O -0.59 -20.09 18.03 -3.04 -0.05 -20.14 16
27 C -0.14 -2.68 5.78 30.59 0.18 -2.51 16
28 H 0.06 0.86 8.14 -2.38 -0.02 0.84 16
29 H 0.11 0.54 8.00 -2.38 -0.02 0.52 16
30 H 0.08 0.86 5.84 -2.39 -0.01 0.85 16
31 H 0.07 1.76 7.99 -2.39 -0.02 1.74 16
32 H 0.12 1.56 4.59 -2.39 -0.01 1.55 16
33 H 0.08 1.85 7.63 -2.39 -0.02 1.83 16
34 H 0.08 2.57 7.48 -2.39 -0.02 2.55 16
35 H 0.05 1.83 7.67 -2.39 -0.02 1.81 16
36 H 0.06 2.11 7.55 -2.39 -0.02 2.10 16
37 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16
38 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16
39 H 0.07 1.91 7.13 -2.39 -0.02 1.90 16
40 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16
41 H 0.05 2.00 7.93 -2.39 -0.02 1.98 16
42 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16
43 H 0.25 13.45 8.31 -92.71 -0.77 12.68 16
44 H 0.07 3.26 5.98 -2.39 -0.01 3.25 16
45 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16
46 H 0.10 1.07 5.80 -2.39 -0.01 1.06 16
47 H 0.13 0.54 7.89 -2.38 -0.02 0.52 16
48 H 0.42 5.76 8.96 -92.71 -0.83 4.93 16
49 H 0.15 1.81 7.80 -2.39 -0.02 1.79 16
50 H 0.09 2.41 6.97 -2.39 -0.02 2.39 16
Total: -1.00 -73.85 375.44 1.11 -72.74
By element:
Atomic # 1 Polarization: 17.64 SS G_CDS: 0.13 Total: 17.77 kcal
Atomic # 6 Polarization: 16.05 SS G_CDS: 6.08 Total: 22.14 kcal
Atomic # 7 Polarization: -107.05 SS G_CDS: -7.03 Total: -114.07 kcal
Atomic # 8 Polarization: -41.54 SS G_CDS: -0.10 Total: -41.64 kcal
Atomic # 14 Polarization: 41.04 SS G_CDS: 2.03 Total: 43.07 kcal
Total: -73.85 1.11 -72.74 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001040308083.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 7.395 kcal
(2) G-P(sol) polarization free energy of solvation -73.851 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.456 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.111 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.741 kcal
(6) G-S(sol) free energy of system = (1) + (5) -65.345 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.30 seconds