Wall clock time and date at job start Tue Mar 31 2020 19:03:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 O 1.34250 * 126.52482 * 2 1 4 4 C 1.34053 * 108.22937 * 180.23194 * 3 2 1 5 5 C 1.50691 * 125.38242 * 179.73308 * 4 3 2 6 6 C 1.52997 * 109.47233 * 300.04480 * 5 4 3 7 7 C 1.52999 * 109.47336 * 60.04150 * 5 4 3 8 8 N 1.29940 * 109.23954 * 359.77380 * 4 3 2 9 9 C 1.36068 * 108.47852 * 359.97438 * 8 4 3 10 10 C 1.47422 * 126.45106 * 179.97438 * 9 8 4 11 11 O 1.21613 * 119.99763 * 186.03654 * 10 9 8 12 12 N 1.34773 * 119.99920 * 6.03485 * 10 9 8 13 13 C 1.46925 * 120.63024 * 354.11542 * 12 10 9 14 14 C 1.53186 * 108.78117 * 126.37028 * 13 12 10 15 15 C 1.53048 * 109.30883 * 54.63007 * 14 13 12 16 16 H 1.08997 * 109.45649 * 58.65120 * 15 14 13 17 17 N 1.46505 * 109.45638 * 178.62070 * 15 14 13 18 18 C 1.36942 * 119.99704 * 275.02863 * 17 15 14 19 19 H 1.07996 * 120.00135 * 359.97438 * 18 17 15 20 20 C 1.38812 * 119.99934 * 180.02562 * 18 17 15 21 21 N 1.31620 * 120.00416 * 179.97438 * 20 18 17 22 22 Si 1.86806 * 119.99717 * 0.02562 * 20 18 17 23 23 H 1.48499 * 109.47154 * 90.00100 * 22 20 18 24 24 H 1.48498 * 109.47291 * 329.99621 * 22 20 18 25 25 H 1.48503 * 109.47040 * 209.99588 * 22 20 18 26 26 C 1.53034 * 109.52806 * 298.63015 * 15 14 13 27 27 C 1.46919 * 120.63111 * 174.09353 * 12 10 9 28 28 H 1.09006 * 109.58854 * 113.69894 * 27 12 10 29 29 C 1.52997 * 109.58756 * 353.41669 * 27 12 10 30 30 H 1.08997 * 109.47031 * 270.15804 * 1 2 3 31 31 H 1.08997 * 109.47485 * 30.16084 * 1 2 3 32 32 H 1.08997 * 109.47205 * 150.16138 * 1 2 3 33 33 H 1.09002 * 109.47546 * 180.02562 * 5 4 3 34 34 H 1.09001 * 109.47058 * 299.99751 * 6 5 4 35 35 H 1.08997 * 109.47524 * 60.00011 * 6 5 4 36 36 H 1.09002 * 109.47266 * 180.02562 * 6 5 4 37 37 H 1.09009 * 109.47055 * 59.99783 * 7 5 4 38 38 H 1.08996 * 109.47666 * 179.97438 * 7 5 4 39 39 H 1.09001 * 109.47255 * 300.00707 * 7 5 4 40 40 H 1.09004 * 109.58738 * 6.58232 * 13 12 10 41 41 H 1.09009 * 109.59000 * 246.15859 * 13 12 10 42 42 H 1.09008 * 109.49468 * 294.68784 * 14 13 12 43 43 H 1.08999 * 109.50401 * 174.58701 * 14 13 12 44 44 H 0.96995 * 120.00158 * 95.03431 * 17 15 14 45 45 H 0.96999 * 120.00183 * 180.02562 * 21 20 18 46 46 H 1.09001 * 109.49657 * 181.32129 * 26 15 14 47 47 H 1.08999 * 109.50415 * 301.42109 * 26 15 14 48 48 H 1.08996 * 109.47029 * 66.09147 * 29 27 12 49 49 H 1.09005 * 109.47229 * 186.08925 * 29 27 12 50 50 H 1.09001 * 109.47356 * 306.08953 * 29 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3061 1.0788 0.0000 4 6 3.5788 0.6580 -0.0052 5 6 4.7929 1.5506 -0.0127 6 6 4.7702 2.4321 -1.2630 7 6 4.7831 2.4356 1.2353 8 7 3.6002 -0.6412 -0.0035 9 6 2.3170 -1.0937 0.0034 10 6 1.8853 -2.5033 0.0069 11 8 0.7053 -2.7780 -0.0976 12 7 2.7984 -3.4874 0.1259 13 6 4.2351 -3.1798 0.1237 14 6 4.8730 -3.7944 1.3734 15 6 4.5504 -5.2896 1.4231 16 1 4.9276 -5.7726 0.5217 17 7 5.1865 -5.8873 2.5997 18 6 6.4895 -6.3037 2.5363 19 1 7.0480 -6.1919 1.6187 20 6 7.0921 -6.8705 3.6509 21 7 8.3443 -7.2712 3.5899 22 14 6.1252 -7.0659 5.2373 23 1 5.4442 -8.3855 5.2427 24 1 5.1114 -5.9852 5.3355 25 1 7.0515 -6.9823 6.3950 26 6 3.0348 -5.4833 1.5093 27 6 2.3761 -4.8881 0.2608 28 1 2.6851 -5.4494 -0.6211 29 6 0.8542 -4.9535 0.4032 30 1 -0.3633 0.0028 1.0276 31 1 -0.3634 0.8885 -0.5163 32 1 -0.3633 -0.8914 -0.5113 33 1 5.6944 0.9379 -0.0162 34 1 4.7772 1.8016 -2.1522 35 1 3.8688 3.0449 -1.2593 36 1 5.6486 3.0774 -1.2687 37 1 4.7993 1.8076 2.1262 38 1 5.6615 3.0809 1.2302 39 1 3.8816 3.0483 1.2392 40 1 4.3775 -2.0991 0.1346 41 1 4.6980 -3.6023 -0.7682 42 1 4.4742 -3.3064 2.2629 43 1 5.9536 -3.6564 1.3358 44 1 4.6847 -5.9882 3.4237 45 1 8.7652 -7.6676 4.3687 46 1 2.8068 -6.5476 1.5683 47 1 2.6534 -4.9793 2.3974 48 1 0.3879 -4.6183 -0.5232 49 1 0.5525 -5.9801 0.6110 50 1 0.5379 -4.3088 1.2232 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044604511.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:03:28 Heat of formation + Delta-G solvation = 13.637049 kcal Electronic energy + Delta-G solvation = -30340.903160 eV Core-core repulsion = 26370.873868 eV Total energy + Delta-G solvation = -3970.029293 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.70599 -40.24072 -37.46097 -36.12654 -35.23569 -34.56819 -32.42835 -32.15841 -31.84728 -29.76098 -27.65375 -27.63467 -26.89209 -24.57388 -23.79818 -23.20011 -22.46153 -21.91902 -20.59639 -20.00801 -19.00473 -17.57107 -17.17897 -17.05529 -16.37581 -15.97113 -15.38718 -15.00673 -14.75580 -14.71760 -14.17078 -14.02823 -13.80711 -13.69614 -13.55796 -13.26214 -13.20133 -13.03853 -12.82132 -12.62861 -12.51359 -12.25654 -12.14138 -11.97318 -11.81578 -11.75530 -11.64795 -11.46105 -11.37104 -10.98186 -10.96472 -10.73976 -10.65313 -10.27572 -9.94237 -9.71392 -9.56557 -9.13452 -8.98767 -8.83842 -8.35088 -7.23400 -5.75225 -3.10178 0.93603 1.82458 2.23137 3.00102 3.27870 3.39018 3.42598 3.46500 3.55626 4.32028 4.44369 4.55474 4.58314 4.60993 4.80129 4.97083 5.04216 5.10963 5.16097 5.18027 5.21985 5.34303 5.35519 5.38293 5.40590 5.49925 5.58398 5.63151 5.65051 5.65767 5.71211 5.77112 5.79332 5.84747 5.86698 5.98240 6.08675 6.12350 6.37181 6.41293 6.45444 6.48294 6.64397 6.79307 6.95373 7.08135 7.30743 7.60493 8.01496 8.22449 8.44146 9.22814 9.95757 10.16249 11.43244 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011848 B = 0.003422 C = 0.002870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2362.642773 B = 8180.888924 C = 9754.040109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.034 3.966 3 O -0.193 6.193 4 C 0.201 3.799 5 C 0.000 4.000 6 C -0.150 4.150 7 C -0.151 4.151 8 N -0.450 5.450 9 C -0.067 4.067 10 C 0.599 3.401 11 O -0.539 6.539 12 N -0.581 5.581 13 C 0.060 3.940 14 C -0.144 4.144 15 C 0.181 3.819 16 H 0.055 0.945 17 N -0.749 5.749 18 C -0.240 4.240 19 H 0.090 0.910 20 C 0.004 3.996 21 N -0.935 5.935 22 Si 0.883 3.117 23 H -0.284 1.284 24 H -0.278 1.278 25 H -0.292 1.292 26 C -0.137 4.137 27 C 0.146 3.854 28 H 0.074 0.926 29 C -0.137 4.137 30 H 0.089 0.911 31 H 0.078 0.922 32 H 0.114 0.886 33 H 0.118 0.882 34 H 0.063 0.937 35 H 0.062 0.938 36 H 0.074 0.926 37 H 0.064 0.936 38 H 0.075 0.925 39 H 0.062 0.938 40 H 0.149 0.851 41 H 0.059 0.941 42 H 0.053 0.947 43 H 0.077 0.923 44 H 0.360 0.640 45 H 0.259 0.741 46 H 0.076 0.924 47 H 0.061 0.939 48 H 0.076 0.924 49 H 0.045 0.955 50 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.964 20.815 -9.956 26.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.022 4.022 3 O -0.081 6.081 4 C -0.007 4.007 5 C -0.019 4.019 6 C -0.207 4.207 7 C -0.209 4.209 8 N -0.179 5.179 9 C -0.187 4.187 10 C 0.387 3.613 11 O -0.419 6.419 12 N -0.312 5.312 13 C -0.063 4.063 14 C -0.184 4.184 15 C 0.072 3.928 16 H 0.073 0.927 17 N -0.391 5.391 18 C -0.370 4.370 19 H 0.108 0.892 20 C -0.192 4.192 21 N -0.583 5.583 22 Si 0.714 3.286 23 H -0.211 1.211 24 H -0.204 1.204 25 H -0.218 1.218 26 C -0.176 4.176 27 C 0.043 3.957 28 H 0.092 0.908 29 C -0.194 4.194 30 H 0.108 0.892 31 H 0.097 0.903 32 H 0.133 0.867 33 H 0.136 0.864 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.093 0.907 37 H 0.083 0.917 38 H 0.094 0.906 39 H 0.081 0.919 40 H 0.165 0.835 41 H 0.077 0.923 42 H 0.072 0.928 43 H 0.095 0.905 44 H 0.192 0.808 45 H 0.069 0.931 46 H 0.095 0.905 47 H 0.080 0.920 48 H 0.095 0.905 49 H 0.063 0.937 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -13.782 20.215 -10.078 26.460 hybrid contribution -0.812 0.063 1.385 1.607 sum -14.594 20.278 -8.693 26.452 Atomic orbital electron populations 1.20593 0.82610 1.05402 1.04548 1.23674 0.95032 0.83215 1.00324 1.84284 1.17875 1.36207 1.69697 1.26437 0.84031 0.90455 0.99734 1.19836 0.89937 0.94415 0.97713 1.21896 1.03161 0.99535 0.96158 1.21905 1.03132 0.99548 0.96296 1.70379 1.21016 1.08038 1.18423 1.21666 0.88571 0.95871 1.12593 1.16803 0.85211 0.82345 0.76940 1.90791 1.16918 1.82099 1.52108 1.48028 1.07531 1.06140 1.69504 1.23108 0.77787 1.06920 0.98439 1.22531 1.01201 0.98420 0.96295 1.20200 0.89716 0.91469 0.91448 0.92664 1.42803 1.12287 1.74006 1.09979 1.19083 0.86713 1.32227 0.99003 0.89183 1.24657 0.95914 1.00983 0.97605 1.69699 1.11440 1.47239 1.29926 0.86564 0.79399 0.77943 0.84710 1.21113 1.20423 1.21802 1.22321 0.97141 1.01083 0.97067 1.21337 0.95744 0.80389 0.98264 0.90799 1.22198 0.93097 0.99970 1.04131 0.89244 0.90340 0.86719 0.86411 0.91834 0.91897 0.90675 0.91686 0.90646 0.91909 0.83487 0.92259 0.92836 0.90474 0.80754 0.93116 0.90543 0.92026 0.90529 0.93666 0.91886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.65 9.94 36.01 0.36 -0.29 16 2 C 0.03 0.40 7.44 -35.08 -0.26 0.14 16 3 O -0.19 -2.14 10.73 6.52 0.07 -2.07 16 4 C 0.20 2.22 6.81 -13.08 -0.09 2.13 16 5 C 0.00 0.00 3.39 -91.78 -0.31 -0.31 16 6 C -0.15 -0.88 9.17 37.16 0.34 -0.53 16 7 C -0.15 -0.97 9.17 37.16 0.34 -0.63 16 8 N -0.45 -6.02 7.68 -7.65 -0.06 -6.08 16 9 C -0.07 -0.94 6.75 -83.02 -0.56 -1.50 16 10 C 0.60 9.16 7.49 -12.52 -0.09 9.07 16 11 O -0.54 -8.37 10.35 5.27 0.05 -8.32 16 12 N -0.58 -8.98 2.97 -166.48 -0.49 -9.47 16 13 C 0.06 0.94 6.33 -3.71 -0.02 0.91 16 14 C -0.14 -2.61 5.66 -26.61 -0.15 -2.76 16 15 C 0.18 3.56 2.73 -67.89 -0.19 3.37 16 16 H 0.06 1.13 8.08 -51.93 -0.42 0.71 16 17 N -0.75 -17.96 4.92 -53.38 -0.26 -18.22 16 18 C -0.24 -6.79 10.41 -15.06 -0.16 -6.95 16 19 H 0.09 2.71 8.06 -52.49 -0.42 2.29 16 20 C 0.00 0.12 5.50 -17.43 -0.10 0.02 16 21 N -0.94 -29.49 13.97 55.49 0.78 -28.71 16 22 Si 0.88 22.43 27.74 -169.99 -4.71 17.72 16 23 H -0.28 -7.17 7.11 56.52 0.40 -6.77 16 24 H -0.28 -6.73 6.52 56.52 0.37 -6.36 16 25 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 26 C -0.14 -2.29 4.84 -26.61 -0.13 -2.42 16 27 C 0.15 2.18 3.49 -67.60 -0.24 1.94 16 28 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 29 C -0.14 -1.91 7.61 37.16 0.28 -1.63 16 30 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.11 1.11 6.38 -51.93 -0.33 0.78 16 33 H 0.12 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 35 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 36 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 37 H 0.06 0.49 8.14 -51.92 -0.42 0.07 16 38 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 40 H 0.15 2.24 3.60 -80.64 -0.29 1.95 16 41 H 0.06 0.90 8.14 -51.92 -0.42 0.47 16 42 H 0.05 1.02 8.14 -51.92 -0.42 0.60 16 43 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 44 H 0.36 8.59 5.66 -40.82 -0.23 8.36 16 45 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 46 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 47 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 48 H 0.08 1.10 6.55 -51.93 -0.34 0.76 16 49 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 50 H 0.06 0.95 6.94 -51.93 -0.36 0.59 16 LS Contribution 389.69 15.07 5.87 5.87 Total: -1.00 -33.04 389.69 -8.06 -41.10 By element: Atomic # 1 Polarization: 15.98 SS G_CDS: -8.33 Total: 7.65 kcal Atomic # 6 Polarization: 1.51 SS G_CDS: -0.97 Total: 0.54 kcal Atomic # 7 Polarization: -62.45 SS G_CDS: -0.04 Total: -62.49 kcal Atomic # 8 Polarization: -10.52 SS G_CDS: 0.12 Total: -10.39 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -4.71 Total: 17.72 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -33.04 -8.06 -41.10 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044604511.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.738 kcal (2) G-P(sol) polarization free energy of solvation -33.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.101 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds