Wall clock time and date at job start Tue Mar 31 2020 19:03:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 O 1.34250 * 126.52482 * 2 1 4 4 C 1.34053 * 108.22937 * 180.23194 * 3 2 1 5 5 C 1.50691 * 125.38242 * 179.73308 * 4 3 2 6 6 C 1.52997 * 109.47233 * 300.04480 * 5 4 3 7 7 C 1.52999 * 109.47336 * 60.04150 * 5 4 3 8 8 N 1.29940 * 109.23954 * 359.77380 * 4 3 2 9 9 C 1.36068 * 108.47852 * 359.97438 * 8 4 3 10 10 C 1.47422 * 126.45106 * 179.97438 * 9 8 4 11 11 O 1.21613 * 119.99763 * 186.03654 * 10 9 8 12 12 N 1.34773 * 119.99920 * 6.03485 * 10 9 8 13 13 C 1.46925 * 120.63024 * 354.11542 * 12 10 9 14 14 C 1.53186 * 108.78117 * 126.37028 * 13 12 10 15 15 C 1.53048 * 109.30883 * 54.63007 * 14 13 12 16 16 H 1.08997 * 109.45649 * 58.65120 * 15 14 13 17 17 N 1.46505 * 109.45638 * 178.62070 * 15 14 13 18 18 C 1.36942 * 119.99704 * 275.02863 * 17 15 14 19 19 H 1.07996 * 120.00135 * 359.97438 * 18 17 15 20 20 C 1.38812 * 119.99934 * 180.02562 * 18 17 15 21 21 N 1.31620 * 120.00416 * 179.97438 * 20 18 17 22 22 Si 1.86806 * 119.99717 * 0.02562 * 20 18 17 23 23 H 1.48499 * 109.47154 * 90.00100 * 22 20 18 24 24 H 1.48498 * 109.47291 * 329.99621 * 22 20 18 25 25 H 1.48503 * 109.47040 * 209.99588 * 22 20 18 26 26 C 1.53034 * 109.52806 * 298.63015 * 15 14 13 27 27 C 1.46919 * 120.63111 * 174.09353 * 12 10 9 28 28 H 1.09006 * 109.58854 * 113.69894 * 27 12 10 29 29 C 1.52997 * 109.58756 * 353.41669 * 27 12 10 30 30 H 1.08997 * 109.47031 * 270.15804 * 1 2 3 31 31 H 1.08997 * 109.47485 * 30.16084 * 1 2 3 32 32 H 1.08997 * 109.47205 * 150.16138 * 1 2 3 33 33 H 1.09002 * 109.47546 * 180.02562 * 5 4 3 34 34 H 1.09001 * 109.47058 * 299.99751 * 6 5 4 35 35 H 1.08997 * 109.47524 * 60.00011 * 6 5 4 36 36 H 1.09002 * 109.47266 * 180.02562 * 6 5 4 37 37 H 1.09009 * 109.47055 * 59.99783 * 7 5 4 38 38 H 1.08996 * 109.47666 * 179.97438 * 7 5 4 39 39 H 1.09001 * 109.47255 * 300.00707 * 7 5 4 40 40 H 1.09004 * 109.58738 * 6.58232 * 13 12 10 41 41 H 1.09009 * 109.59000 * 246.15859 * 13 12 10 42 42 H 1.09008 * 109.49468 * 294.68784 * 14 13 12 43 43 H 1.08999 * 109.50401 * 174.58701 * 14 13 12 44 44 H 0.96995 * 120.00158 * 95.03431 * 17 15 14 45 45 H 0.96999 * 120.00183 * 180.02562 * 21 20 18 46 46 H 1.09001 * 109.49657 * 181.32129 * 26 15 14 47 47 H 1.08999 * 109.50415 * 301.42109 * 26 15 14 48 48 H 1.08996 * 109.47029 * 66.09147 * 29 27 12 49 49 H 1.09005 * 109.47229 * 186.08925 * 29 27 12 50 50 H 1.09001 * 109.47356 * 306.08953 * 29 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3061 1.0788 0.0000 4 6 3.5788 0.6580 -0.0052 5 6 4.7929 1.5506 -0.0127 6 6 4.7702 2.4321 -1.2630 7 6 4.7831 2.4356 1.2353 8 7 3.6002 -0.6412 -0.0035 9 6 2.3170 -1.0937 0.0034 10 6 1.8853 -2.5033 0.0069 11 8 0.7053 -2.7780 -0.0976 12 7 2.7984 -3.4874 0.1259 13 6 4.2351 -3.1798 0.1237 14 6 4.8730 -3.7944 1.3734 15 6 4.5504 -5.2896 1.4231 16 1 4.9276 -5.7726 0.5217 17 7 5.1865 -5.8873 2.5997 18 6 6.4895 -6.3037 2.5363 19 1 7.0480 -6.1919 1.6187 20 6 7.0921 -6.8705 3.6509 21 7 8.3443 -7.2712 3.5899 22 14 6.1252 -7.0659 5.2373 23 1 5.4442 -8.3855 5.2427 24 1 5.1114 -5.9852 5.3355 25 1 7.0515 -6.9823 6.3950 26 6 3.0348 -5.4833 1.5093 27 6 2.3761 -4.8881 0.2608 28 1 2.6851 -5.4494 -0.6211 29 6 0.8542 -4.9535 0.4032 30 1 -0.3633 0.0028 1.0276 31 1 -0.3634 0.8885 -0.5163 32 1 -0.3633 -0.8914 -0.5113 33 1 5.6944 0.9379 -0.0162 34 1 4.7772 1.8016 -2.1522 35 1 3.8688 3.0449 -1.2593 36 1 5.6486 3.0774 -1.2687 37 1 4.7993 1.8076 2.1262 38 1 5.6615 3.0809 1.2302 39 1 3.8816 3.0483 1.2392 40 1 4.3775 -2.0991 0.1346 41 1 4.6980 -3.6023 -0.7682 42 1 4.4742 -3.3064 2.2629 43 1 5.9536 -3.6564 1.3358 44 1 4.6847 -5.9882 3.4237 45 1 8.7652 -7.6676 4.3687 46 1 2.8068 -6.5476 1.5683 47 1 2.6534 -4.9793 2.3974 48 1 0.3879 -4.6183 -0.5232 49 1 0.5525 -5.9801 0.6110 50 1 0.5379 -4.3088 1.2232 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044604511.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:03:27 Heat of formation + Delta-G solvation = -7.673987 kcal Electronic energy + Delta-G solvation = -30341.827276 eV Core-core repulsion = 26370.873868 eV Total energy + Delta-G solvation = -3970.953409 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -44.60895 -41.45909 -38.85678 -36.80307 -36.34522 -36.08697 -33.91323 -33.58776 -32.91961 -31.55909 -28.79361 -28.11060 -27.97578 -26.01148 -25.09093 -24.35273 -23.81291 -22.89381 -21.84094 -21.42135 -20.15090 -19.55222 -18.21254 -18.05038 -17.23725 -17.13976 -16.73464 -16.28639 -16.15500 -15.87066 -15.50541 -15.20493 -14.97486 -14.88679 -14.61114 -14.40234 -14.32691 -14.19214 -14.06953 -13.76629 -13.46937 -13.41179 -13.05849 -13.05456 -13.02706 -12.91284 -12.60472 -12.57330 -12.48408 -12.18827 -12.15609 -12.13776 -12.04151 -11.98979 -11.81833 -11.45875 -11.18818 -10.73079 -10.27625 -9.92776 -9.56675 -9.30547 -8.02609 -5.35830 0.00383 0.87357 1.36441 1.38892 1.39187 1.46112 1.87250 2.17595 2.47351 2.69927 3.28182 3.41074 3.48517 3.55169 3.81263 3.90799 4.04469 4.04499 4.07125 4.15074 4.22471 4.26188 4.32506 4.38483 4.52258 4.55846 4.57304 4.63119 4.69515 4.75653 4.82391 4.85370 4.87828 4.89670 4.97138 4.99253 5.07183 5.07466 5.13662 5.23075 5.29089 5.30427 5.37001 5.42792 5.49277 5.75486 5.80591 6.21394 6.28560 6.48749 7.05939 7.06695 7.82625 8.02497 9.18960 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011848 B = 0.003422 C = 0.002870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2362.642773 B = 8180.888924 C = 9754.040109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.045 3.955 3 O -0.190 6.190 4 C 0.208 3.792 5 C -0.002 4.002 6 C -0.144 4.144 7 C -0.147 4.147 8 N -0.477 5.477 9 C -0.103 4.103 10 C 0.597 3.403 11 O -0.545 6.545 12 N -0.588 5.588 13 C 0.070 3.930 14 C -0.131 4.131 15 C 0.175 3.825 16 H 0.046 0.954 17 N -0.751 5.751 18 C -0.227 4.227 19 H 0.058 0.942 20 C -0.062 4.062 21 N -0.983 5.983 22 Si 0.953 3.047 23 H -0.277 1.277 24 H -0.258 1.258 25 H -0.296 1.296 26 C -0.125 4.125 27 C 0.146 3.854 28 H 0.082 0.918 29 C -0.124 4.124 30 H 0.101 0.899 31 H 0.105 0.895 32 H 0.105 0.895 33 H 0.118 0.882 34 H 0.055 0.945 35 H 0.064 0.936 36 H 0.096 0.904 37 H 0.049 0.951 38 H 0.096 0.904 39 H 0.065 0.935 40 H 0.157 0.843 41 H 0.062 0.938 42 H 0.044 0.956 43 H 0.056 0.944 44 H 0.363 0.637 45 H 0.257 0.743 46 H 0.084 0.916 47 H 0.058 0.942 48 H 0.073 0.927 49 H 0.062 0.938 50 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.091 22.655 -9.895 29.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.012 4.012 3 O -0.077 6.077 4 C -0.001 4.001 5 C -0.021 4.021 6 C -0.202 4.202 7 C -0.205 4.205 8 N -0.206 5.206 9 C -0.221 4.221 10 C 0.386 3.614 11 O -0.425 6.425 12 N -0.319 5.319 13 C -0.053 4.053 14 C -0.172 4.172 15 C 0.068 3.932 16 H 0.064 0.936 17 N -0.394 5.394 18 C -0.357 4.357 19 H 0.076 0.924 20 C -0.254 4.254 21 N -0.634 5.634 22 Si 0.781 3.219 23 H -0.203 1.203 24 H -0.183 1.183 25 H -0.222 1.222 26 C -0.164 4.164 27 C 0.043 3.957 28 H 0.100 0.900 29 C -0.181 4.181 30 H 0.120 0.880 31 H 0.124 0.876 32 H 0.123 0.877 33 H 0.136 0.864 34 H 0.074 0.926 35 H 0.084 0.916 36 H 0.115 0.885 37 H 0.069 0.931 38 H 0.115 0.885 39 H 0.084 0.916 40 H 0.173 0.827 41 H 0.081 0.919 42 H 0.063 0.937 43 H 0.075 0.925 44 H 0.196 0.804 45 H 0.066 0.934 46 H 0.102 0.898 47 H 0.077 0.923 48 H 0.092 0.908 49 H 0.080 0.920 50 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -15.965 22.078 -10.047 29.039 hybrid contribution -0.141 -0.414 1.255 1.329 sum -16.106 21.664 -8.792 28.390 Atomic orbital electron populations 1.20710 0.80499 1.06223 1.05498 1.24181 0.96147 0.82715 0.98160 1.84321 1.17902 1.35854 1.69616 1.27129 0.84770 0.90236 0.97921 1.20091 0.88383 0.94426 0.99226 1.21882 1.04339 0.99285 0.94704 1.21898 1.04370 0.99316 0.94896 1.70192 1.21114 1.09357 1.19958 1.21616 0.89440 0.95757 1.15286 1.16981 0.85096 0.82870 0.76480 1.90780 1.16956 1.82464 1.52277 1.48040 1.07293 1.06469 1.70072 1.23001 0.78021 1.07329 0.96903 1.22321 1.00051 0.97386 0.97421 1.20408 0.91610 0.91779 0.89449 0.93609 1.42814 1.10878 1.74231 1.11456 1.19026 0.88152 1.30893 0.97677 0.92358 1.25441 0.96968 1.01552 1.01396 1.69874 1.13491 1.49065 1.30968 0.85442 0.78153 0.78592 0.79752 1.20348 1.18307 1.22238 1.22191 0.94518 1.01763 0.97955 1.21371 0.96400 0.80328 0.97581 0.89973 1.22058 0.91884 1.00731 1.03452 0.88044 0.87628 0.87696 0.86362 0.92570 0.91647 0.88527 0.93144 0.88477 0.91579 0.82670 0.91949 0.93714 0.92525 0.80400 0.93370 0.89771 0.92307 0.90820 0.91966 0.93070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.11 9.94 71.24 0.71 -0.40 16 2 C 0.04 0.98 7.44 25.19 0.19 1.17 16 3 O -0.19 -3.89 10.73 0.42 0.00 -3.88 16 4 C 0.21 4.35 6.81 88.39 0.60 4.95 16 5 C 0.00 -0.03 3.39 -11.54 -0.04 -0.07 16 6 C -0.14 -1.38 9.17 71.98 0.66 -0.72 16 7 C -0.15 -1.63 9.17 71.98 0.66 -0.97 16 8 N -0.48 -12.55 7.68 -293.03 -2.25 -14.80 16 9 C -0.10 -2.79 6.75 40.41 0.27 -2.52 16 10 C 0.60 17.79 7.49 86.66 0.65 18.44 16 11 O -0.54 -16.31 10.35 -4.07 -0.04 -16.36 16 12 N -0.59 -17.77 2.97 -798.87 -2.37 -20.14 16 13 C 0.07 2.19 6.33 86.36 0.55 2.74 16 14 C -0.13 -4.82 5.66 30.67 0.17 -4.65 16 15 C 0.18 6.89 2.73 45.02 0.12 7.01 16 16 H 0.05 1.89 8.08 -2.39 -0.02 1.87 16 17 N -0.75 -35.94 4.92 -322.80 -1.59 -37.53 16 18 C -0.23 -13.06 10.41 84.03 0.87 -12.18 16 19 H 0.06 3.67 8.06 -2.91 -0.02 3.65 16 20 C -0.06 -3.71 5.50 84.86 0.47 -3.24 16 21 N -0.98 -63.56 13.97 21.65 0.30 -63.26 16 22 Si 0.95 46.43 27.74 68.60 1.90 48.33 16 23 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 24 H -0.26 -11.58 6.52 99.48 0.65 -10.94 16 25 H -0.30 -14.54 7.11 99.48 0.71 -13.83 16 26 C -0.13 -4.04 4.84 30.67 0.15 -3.89 16 27 C 0.15 4.19 3.49 44.98 0.16 4.35 16 28 H 0.08 2.24 8.14 -2.38 -0.02 2.22 16 29 C -0.12 -3.25 7.61 71.98 0.55 -2.70 16 30 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.10 1.87 6.38 -2.39 -0.02 1.85 16 33 H 0.12 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 35 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 36 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 37 H 0.05 0.71 8.14 -2.38 -0.02 0.69 16 38 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 39 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 40 H 0.16 4.74 3.60 -59.07 -0.21 4.53 16 41 H 0.06 1.89 8.14 -2.38 -0.02 1.87 16 42 H 0.04 1.71 8.14 -2.38 -0.02 1.69 16 43 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 44 H 0.36 16.86 5.66 -92.71 -0.52 16.34 16 45 H 0.26 15.86 8.31 -92.71 -0.77 15.09 16 46 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 47 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 48 H 0.07 1.99 6.55 -2.39 -0.02 1.98 16 49 H 0.06 1.41 8.14 -2.38 -0.02 1.39 16 50 H 0.05 1.46 6.94 -2.39 -0.02 1.45 16 Total: -1.00 -72.07 389.69 2.85 -69.22 By element: Atomic # 1 Polarization: 30.95 SS G_CDS: 0.15 Total: 31.10 kcal Atomic # 6 Polarization: 0.57 SS G_CDS: 6.74 Total: 7.31 kcal Atomic # 7 Polarization: -129.82 SS G_CDS: -5.91 Total: -135.73 kcal Atomic # 8 Polarization: -20.20 SS G_CDS: -0.04 Total: -20.24 kcal Atomic # 14 Polarization: 46.43 SS G_CDS: 1.90 Total: 48.33 kcal Total: -72.07 2.85 -69.22 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044604511.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.549 kcal (2) G-P(sol) polarization free energy of solvation -72.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds