Wall clock time and date at job start Tue Mar 31 2020 20:09:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.33690 * 126.27447 * 2 1 4 4 C 1.30622 * 108.99642 * 180.27391 * 3 2 1 5 5 C 1.50691 * 125.42609 * 179.71131 * 4 3 2 6 6 C 1.53001 * 109.47143 * 300.02261 * 5 4 3 7 7 C 1.53002 * 109.47143 * 60.02156 * 5 4 3 8 8 O 1.33668 * 109.15004 * 359.72762 * 4 3 2 9 9 C 1.35340 * 107.68398 * 0.02562 * 8 4 3 10 10 C 1.46723 * 126.64194 * 179.97438 * 9 8 4 11 11 O 1.21685 * 120.00243 * 186.16050 * 10 9 8 12 12 N 1.34775 * 119.99993 * 6.15374 * 10 9 8 13 13 C 1.46927 * 120.63271 * 353.98117 * 12 10 9 14 14 C 1.53197 * 108.77587 * 126.36637 * 13 12 10 15 15 C 1.53035 * 109.31149 * 54.63639 * 14 13 12 16 16 H 1.08998 * 109.46101 * 58.64131 * 15 14 13 17 17 N 1.46498 * 109.45920 * 178.61518 * 15 14 13 18 18 C 1.36947 * 119.99731 * 275.02762 * 17 15 14 19 19 H 1.07995 * 120.00099 * 0.02562 * 18 17 15 20 20 C 1.38812 * 119.99711 * 180.02562 * 18 17 15 21 21 N 1.31615 * 119.99997 * 180.02562 * 20 18 17 22 22 Si 1.86804 * 120.00255 * 359.97438 * 20 18 17 23 23 H 1.48496 * 109.46900 * 89.99956 * 22 20 18 24 24 H 1.48502 * 109.46733 * 330.00329 * 22 20 18 25 25 H 1.48495 * 109.47215 * 210.00603 * 22 20 18 26 26 C 1.53044 * 109.52926 * 298.62963 * 15 14 13 27 27 C 1.46928 * 120.63297 * 173.95709 * 12 10 9 28 28 H 1.09004 * 109.58963 * 113.70111 * 27 12 10 29 29 C 1.53007 * 109.58323 * 353.42067 * 27 12 10 30 30 H 1.09005 * 109.46578 * 270.19120 * 1 2 3 31 31 H 1.09004 * 109.47007 * 30.18527 * 1 2 3 32 32 H 1.08992 * 109.47349 * 150.18955 * 1 2 3 33 33 H 1.09005 * 109.47320 * 180.02562 * 5 4 3 34 34 H 1.09005 * 109.46567 * 60.00110 * 6 5 4 35 35 H 1.09003 * 109.47147 * 179.97438 * 6 5 4 36 36 H 1.08994 * 109.46958 * 299.99920 * 6 5 4 37 37 H 1.08999 * 109.47301 * 60.00450 * 7 5 4 38 38 H 1.09003 * 109.47264 * 180.02562 * 7 5 4 39 39 H 1.08995 * 109.47620 * 300.00295 * 7 5 4 40 40 H 1.09004 * 109.58526 * 6.58414 * 13 12 10 41 41 H 1.08999 * 109.58528 * 246.15588 * 13 12 10 42 42 H 1.08999 * 109.49701 * 294.68643 * 14 13 12 43 43 H 1.08996 * 109.49765 * 174.58992 * 14 13 12 44 44 H 0.97002 * 120.00207 * 95.02863 * 17 15 14 45 45 H 0.97005 * 120.00218 * 180.02562 * 21 20 18 46 46 H 1.09001 * 109.49393 * 181.32319 * 26 15 14 47 47 H 1.08997 * 109.49107 * 301.42090 * 26 15 14 48 48 H 1.08998 * 109.46969 * 66.25271 * 29 27 12 49 49 H 1.09002 * 109.46551 * 186.24768 * 29 27 12 50 50 H 1.08999 * 109.47172 * 306.24703 * 29 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2980 1.0778 0.0000 4 6 3.5453 0.6899 -0.0059 5 6 4.7440 1.6029 -0.0141 6 6 4.7057 2.4837 -1.2647 7 6 4.7197 2.4878 1.2338 8 8 3.5890 -0.6461 -0.0038 9 6 2.3137 -1.0991 0.0031 10 6 1.8826 -2.5016 0.0070 11 8 0.7018 -2.7756 -0.0999 12 7 2.7945 -3.4865 0.1288 13 6 4.2316 -3.1808 0.1264 14 6 4.8681 -3.7930 1.3782 15 6 4.5436 -5.2876 1.4315 16 1 4.9206 -5.7734 0.5315 17 7 5.1785 -5.8831 2.6099 18 6 6.4811 -6.3013 2.5480 19 1 7.0404 -6.1917 1.6307 20 6 7.0824 -6.8660 3.6644 21 7 8.3344 -7.2674 3.6052 22 14 6.1152 -7.0548 5.2513 23 1 5.4316 -8.3731 5.2604 24 1 5.1034 -5.9720 5.3461 25 1 7.0415 -6.9694 6.4088 26 6 3.0277 -5.4793 1.5174 27 6 2.3704 -4.8865 0.2672 28 1 2.6790 -5.4505 -0.6131 29 6 0.8483 -4.9496 0.4091 30 1 -0.3633 0.0034 1.0277 31 1 -0.3633 0.8884 -0.5167 32 1 -0.3633 -0.8916 -0.5108 33 1 5.6558 1.0056 -0.0183 34 1 3.7939 3.0810 -1.2605 35 1 5.5726 3.1445 -1.2704 36 1 4.7231 1.8533 -2.1536 37 1 4.7470 1.8605 2.1247 38 1 5.5865 3.1487 1.2276 39 1 3.8080 3.0852 1.2380 40 1 4.3752 -2.1003 0.1347 41 1 4.6941 -3.6062 -0.7642 42 1 4.4695 -3.3023 2.2661 43 1 5.9488 -3.6564 1.3406 44 1 4.6762 -5.9812 3.4339 45 1 8.7546 -7.6624 4.3852 46 1 2.7985 -6.5432 1.5791 47 1 2.6467 -4.9725 2.4041 48 1 0.3828 -4.6190 -0.5194 49 1 0.5455 -5.9748 0.6223 50 1 0.5322 -4.3002 1.2254 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044770652.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:09:40 Heat of formation + Delta-G solvation = 11.909268 kcal Electronic energy + Delta-G solvation = -30381.307010 eV Core-core repulsion = 26411.202795 eV Total energy + Delta-G solvation = -3970.104215 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.67270 -40.38632 -37.68287 -36.24068 -35.45279 -34.60906 -32.95734 -32.02599 -30.97280 -29.93179 -28.03899 -27.58230 -27.08553 -24.77959 -24.12847 -23.05018 -22.54273 -21.21732 -20.70355 -20.36499 -19.62202 -17.66390 -17.25614 -17.06408 -16.63755 -16.15367 -15.14545 -15.09141 -14.83212 -14.63337 -14.28008 -14.20717 -13.70071 -13.64599 -13.52999 -13.39254 -13.30549 -12.99696 -12.68707 -12.57457 -12.50480 -12.31349 -12.16141 -12.08051 -11.94816 -11.70481 -11.46771 -11.44343 -11.11326 -11.06948 -11.03543 -10.92068 -10.74117 -10.47647 -10.29541 -9.98732 -9.64585 -9.36283 -9.01132 -8.97003 -8.55605 -7.33733 -5.82502 -3.18578 0.67832 2.13570 2.23218 2.89052 3.02094 3.33810 3.37101 3.41930 3.61132 4.30486 4.45839 4.54342 4.60732 4.61452 4.68493 4.90833 4.97247 5.08780 5.16949 5.24525 5.25818 5.27578 5.37027 5.42476 5.43309 5.48370 5.49958 5.53852 5.54317 5.67526 5.68657 5.73152 5.82572 5.83049 5.88427 5.93130 5.96332 6.11470 6.20523 6.21851 6.25868 6.32028 6.37371 6.58695 6.73997 6.88455 7.24251 7.46512 7.92765 7.97190 8.36472 9.14469 9.87308 10.06967 11.35642 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011902 B = 0.003422 C = 0.002873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2351.963444 B = 8179.386742 C = 9742.871546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.077 3.923 3 N -0.484 5.484 4 C 0.215 3.785 5 C -0.002 4.002 6 C -0.143 4.143 7 C -0.144 4.144 8 O -0.177 6.177 9 C -0.116 4.116 10 C 0.606 3.394 11 O -0.516 6.516 12 N -0.591 5.591 13 C 0.090 3.910 14 C -0.149 4.149 15 C 0.183 3.817 16 H 0.058 0.942 17 N -0.747 5.747 18 C -0.245 4.245 19 H 0.091 0.909 20 C 0.006 3.994 21 N -0.933 5.933 22 Si 0.883 3.117 23 H -0.284 1.284 24 H -0.278 1.278 25 H -0.291 1.291 26 C -0.139 4.139 27 C 0.148 3.852 28 H 0.078 0.922 29 C -0.140 4.140 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.096 0.904 33 H 0.102 0.898 34 H 0.069 0.931 35 H 0.073 0.927 36 H 0.059 0.941 37 H 0.061 0.939 38 H 0.074 0.926 39 H 0.069 0.931 40 H 0.102 0.898 41 H 0.072 0.928 42 H 0.057 0.943 43 H 0.081 0.919 44 H 0.361 0.639 45 H 0.260 0.740 46 H 0.080 0.920 47 H 0.063 0.937 48 H 0.077 0.923 49 H 0.049 0.951 50 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.121 17.924 -9.843 23.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.047 4.047 3 N -0.213 5.213 4 C 0.010 3.990 5 C -0.022 4.022 6 C -0.201 4.201 7 C -0.202 4.202 8 O -0.065 6.065 9 C -0.170 4.170 10 C 0.394 3.606 11 O -0.396 6.396 12 N -0.323 5.323 13 C -0.032 4.032 14 C -0.190 4.190 15 C 0.073 3.927 16 H 0.076 0.924 17 N -0.389 5.389 18 C -0.375 4.375 19 H 0.108 0.892 20 C -0.190 4.190 21 N -0.580 5.580 22 Si 0.714 3.286 23 H -0.210 1.210 24 H -0.204 1.204 25 H -0.217 1.217 26 C -0.178 4.178 27 C 0.046 3.954 28 H 0.096 0.904 29 C -0.197 4.197 30 H 0.097 0.903 31 H 0.093 0.907 32 H 0.115 0.885 33 H 0.120 0.880 34 H 0.088 0.912 35 H 0.092 0.908 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.093 0.907 39 H 0.088 0.912 40 H 0.119 0.881 41 H 0.091 0.909 42 H 0.076 0.924 43 H 0.100 0.900 44 H 0.194 0.806 45 H 0.070 0.930 46 H 0.098 0.902 47 H 0.082 0.918 48 H 0.096 0.904 49 H 0.068 0.932 50 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -12.606 18.249 -9.956 24.312 hybrid contribution -0.015 -0.875 1.374 1.629 sum -12.621 17.374 -8.582 23.126 Atomic orbital electron populations 1.20383 0.85445 1.04330 1.03545 1.22025 0.98204 0.86444 0.97998 1.70266 1.00292 1.30989 1.19802 1.26736 0.95593 0.80186 0.96467 1.19790 0.90618 0.93269 0.98499 1.21841 1.03463 0.99385 0.95381 1.21847 1.03429 0.99387 0.95527 1.84678 1.29391 1.22756 1.69643 1.23153 0.81225 0.96415 1.16253 1.16563 0.85508 0.81179 0.77377 1.90875 1.16413 1.80687 1.51586 1.48148 1.07063 1.06851 1.70226 1.22434 0.78747 1.02078 0.99919 1.22627 1.01470 0.99148 0.95706 1.20151 0.89835 0.90963 0.91728 0.92421 1.42789 1.12409 1.73912 1.09810 1.19062 0.86707 1.32725 0.99012 0.89156 1.24665 0.95897 1.00773 0.97639 1.69696 1.11451 1.46934 1.29948 0.86569 0.79417 0.77981 0.84658 1.21026 1.20403 1.21725 1.22352 0.97013 1.01411 0.97043 1.21366 0.95953 0.79582 0.98497 0.90421 1.22216 0.92834 1.00368 1.04256 0.90262 0.90663 0.88498 0.87975 0.91168 0.90763 0.92166 0.92018 0.90739 0.91182 0.88109 0.90935 0.92404 0.90015 0.80633 0.93014 0.90187 0.91823 0.90429 0.93250 0.91735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.86 9.94 36.01 0.36 -0.50 16 2 C 0.08 1.02 7.16 -82.47 -0.59 0.43 16 3 N -0.48 -6.16 11.26 -7.07 -0.08 -6.24 16 4 C 0.22 2.48 6.82 -12.80 -0.09 2.40 16 5 C 0.00 -0.02 3.39 -91.77 -0.31 -0.33 16 6 C -0.14 -0.94 9.18 37.16 0.34 -0.60 16 7 C -0.14 -1.03 9.18 37.16 0.34 -0.69 16 8 O -0.18 -2.29 7.26 4.42 0.03 -2.26 16 9 C -0.12 -1.61 6.89 -36.84 -0.25 -1.86 16 10 C 0.61 8.79 7.47 -12.83 -0.10 8.70 16 11 O -0.52 -7.78 10.34 5.20 0.05 -7.73 16 12 N -0.59 -8.31 2.97 -166.73 -0.50 -8.81 16 13 C 0.09 1.24 6.34 -3.71 -0.02 1.22 16 14 C -0.15 -2.46 5.66 -26.61 -0.15 -2.61 16 15 C 0.18 3.33 2.73 -67.89 -0.19 3.15 16 16 H 0.06 1.08 8.08 -51.93 -0.42 0.66 16 17 N -0.75 -17.08 4.92 -53.39 -0.26 -17.35 16 18 C -0.25 -6.69 10.41 -15.05 -0.16 -6.85 16 19 H 0.09 2.63 8.06 -52.49 -0.42 2.20 16 20 C 0.01 0.18 5.50 -17.43 -0.10 0.08 16 21 N -0.93 -28.77 13.97 55.49 0.78 -28.00 16 22 Si 0.88 21.85 27.74 -169.99 -4.71 17.13 16 23 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 24 H -0.28 -6.52 6.52 56.52 0.37 -6.15 16 25 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 26 C -0.14 -2.14 4.84 -26.61 -0.13 -2.27 16 27 C 0.15 2.02 3.49 -67.60 -0.24 1.79 16 28 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 29 C -0.14 -1.81 7.61 37.16 0.28 -1.53 16 30 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 31 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.10 1.09 6.36 -51.93 -0.33 0.76 16 33 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 39 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 40 H 0.10 1.34 3.76 -55.13 -0.21 1.13 16 41 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 42 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 43 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 44 H 0.36 8.24 5.66 -40.82 -0.23 8.01 16 45 H 0.26 7.65 8.31 -40.82 -0.34 7.32 16 46 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 47 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 48 H 0.08 1.04 6.56 -51.93 -0.34 0.70 16 49 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 50 H 0.06 0.92 6.93 -51.93 -0.36 0.56 16 LS Contribution 389.79 15.07 5.87 5.87 Total: -1.00 -31.80 389.79 -8.06 -39.85 By element: Atomic # 1 Polarization: 15.24 SS G_CDS: -8.24 Total: 7.00 kcal Atomic # 6 Polarization: 1.51 SS G_CDS: -0.99 Total: 0.52 kcal Atomic # 7 Polarization: -60.33 SS G_CDS: -0.06 Total: -60.39 kcal Atomic # 8 Polarization: -10.07 SS G_CDS: 0.09 Total: -9.98 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.71 Total: 17.13 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -31.80 -8.06 -39.85 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044770652.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.763 kcal (2) G-P(sol) polarization free energy of solvation -31.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.854 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds