Wall clock time and date at job start Tue Mar 31 2020 20:09:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.33690 * 126.27447 * 2 1 4 4 C 1.30622 * 108.99642 * 180.27391 * 3 2 1 5 5 C 1.50691 * 125.42609 * 179.71131 * 4 3 2 6 6 C 1.53001 * 109.47143 * 300.02261 * 5 4 3 7 7 C 1.53002 * 109.47143 * 60.02156 * 5 4 3 8 8 O 1.33668 * 109.15004 * 359.72762 * 4 3 2 9 9 C 1.35340 * 107.68398 * 0.02562 * 8 4 3 10 10 C 1.46723 * 126.64194 * 179.97438 * 9 8 4 11 11 O 1.21685 * 120.00243 * 186.16050 * 10 9 8 12 12 N 1.34775 * 119.99993 * 6.15374 * 10 9 8 13 13 C 1.46927 * 120.63271 * 353.98117 * 12 10 9 14 14 C 1.53197 * 108.77587 * 126.36637 * 13 12 10 15 15 C 1.53035 * 109.31149 * 54.63639 * 14 13 12 16 16 H 1.08998 * 109.46101 * 58.64131 * 15 14 13 17 17 N 1.46498 * 109.45920 * 178.61518 * 15 14 13 18 18 C 1.36947 * 119.99731 * 275.02762 * 17 15 14 19 19 H 1.07995 * 120.00099 * 0.02562 * 18 17 15 20 20 C 1.38812 * 119.99711 * 180.02562 * 18 17 15 21 21 N 1.31615 * 119.99997 * 180.02562 * 20 18 17 22 22 Si 1.86804 * 120.00255 * 359.97438 * 20 18 17 23 23 H 1.48496 * 109.46900 * 89.99956 * 22 20 18 24 24 H 1.48502 * 109.46733 * 330.00329 * 22 20 18 25 25 H 1.48495 * 109.47215 * 210.00603 * 22 20 18 26 26 C 1.53044 * 109.52926 * 298.62963 * 15 14 13 27 27 C 1.46928 * 120.63297 * 173.95709 * 12 10 9 28 28 H 1.09004 * 109.58963 * 113.70111 * 27 12 10 29 29 C 1.53007 * 109.58323 * 353.42067 * 27 12 10 30 30 H 1.09005 * 109.46578 * 270.19120 * 1 2 3 31 31 H 1.09004 * 109.47007 * 30.18527 * 1 2 3 32 32 H 1.08992 * 109.47349 * 150.18955 * 1 2 3 33 33 H 1.09005 * 109.47320 * 180.02562 * 5 4 3 34 34 H 1.09005 * 109.46567 * 60.00110 * 6 5 4 35 35 H 1.09003 * 109.47147 * 179.97438 * 6 5 4 36 36 H 1.08994 * 109.46958 * 299.99920 * 6 5 4 37 37 H 1.08999 * 109.47301 * 60.00450 * 7 5 4 38 38 H 1.09003 * 109.47264 * 180.02562 * 7 5 4 39 39 H 1.08995 * 109.47620 * 300.00295 * 7 5 4 40 40 H 1.09004 * 109.58526 * 6.58414 * 13 12 10 41 41 H 1.08999 * 109.58528 * 246.15588 * 13 12 10 42 42 H 1.08999 * 109.49701 * 294.68643 * 14 13 12 43 43 H 1.08996 * 109.49765 * 174.58992 * 14 13 12 44 44 H 0.97002 * 120.00207 * 95.02863 * 17 15 14 45 45 H 0.97005 * 120.00218 * 180.02562 * 21 20 18 46 46 H 1.09001 * 109.49393 * 181.32319 * 26 15 14 47 47 H 1.08997 * 109.49107 * 301.42090 * 26 15 14 48 48 H 1.08998 * 109.46969 * 66.25271 * 29 27 12 49 49 H 1.09002 * 109.46551 * 186.24768 * 29 27 12 50 50 H 1.08999 * 109.47172 * 306.24703 * 29 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2980 1.0778 0.0000 4 6 3.5453 0.6899 -0.0059 5 6 4.7440 1.6029 -0.0141 6 6 4.7057 2.4837 -1.2647 7 6 4.7197 2.4878 1.2338 8 8 3.5890 -0.6461 -0.0038 9 6 2.3137 -1.0991 0.0031 10 6 1.8826 -2.5016 0.0070 11 8 0.7018 -2.7756 -0.0999 12 7 2.7945 -3.4865 0.1288 13 6 4.2316 -3.1808 0.1264 14 6 4.8681 -3.7930 1.3782 15 6 4.5436 -5.2876 1.4315 16 1 4.9206 -5.7734 0.5315 17 7 5.1785 -5.8831 2.6099 18 6 6.4811 -6.3013 2.5480 19 1 7.0404 -6.1917 1.6307 20 6 7.0824 -6.8660 3.6644 21 7 8.3344 -7.2674 3.6052 22 14 6.1152 -7.0548 5.2513 23 1 5.4316 -8.3731 5.2604 24 1 5.1034 -5.9720 5.3461 25 1 7.0415 -6.9694 6.4088 26 6 3.0277 -5.4793 1.5174 27 6 2.3704 -4.8865 0.2672 28 1 2.6790 -5.4505 -0.6131 29 6 0.8483 -4.9496 0.4091 30 1 -0.3633 0.0034 1.0277 31 1 -0.3633 0.8884 -0.5167 32 1 -0.3633 -0.8916 -0.5108 33 1 5.6558 1.0056 -0.0183 34 1 3.7939 3.0810 -1.2605 35 1 5.5726 3.1445 -1.2704 36 1 4.7231 1.8533 -2.1536 37 1 4.7470 1.8605 2.1247 38 1 5.5865 3.1487 1.2276 39 1 3.8080 3.0852 1.2380 40 1 4.3752 -2.1003 0.1347 41 1 4.6941 -3.6062 -0.7642 42 1 4.4695 -3.3023 2.2661 43 1 5.9488 -3.6564 1.3406 44 1 4.6762 -5.9812 3.4339 45 1 8.7546 -7.6624 4.3852 46 1 2.7985 -6.5432 1.5791 47 1 2.6467 -4.9725 2.4041 48 1 0.3828 -4.6190 -0.5194 49 1 0.5455 -5.9748 0.6223 50 1 0.5322 -4.3002 1.2254 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044770652.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:09:39 Heat of formation + Delta-G solvation = -9.181206 kcal Electronic energy + Delta-G solvation = -30382.221562 eV Core-core repulsion = 26411.202795 eV Total energy + Delta-G solvation = -3971.018767 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -44.63086 -41.52698 -38.97371 -37.02271 -36.55421 -35.99883 -34.12739 -33.84729 -31.92349 -31.60002 -29.12747 -28.22354 -28.11844 -26.05881 -25.32864 -24.36987 -23.84959 -22.28105 -21.78862 -21.46251 -20.85987 -19.61035 -18.33284 -18.08307 -17.52378 -17.27711 -16.74318 -16.28841 -15.96485 -15.74985 -15.57528 -15.28987 -15.02546 -14.83228 -14.63903 -14.42900 -14.26201 -14.18798 -14.04764 -13.80826 -13.53591 -13.26122 -13.13443 -13.08833 -12.97580 -12.75107 -12.68642 -12.61532 -12.32709 -12.19176 -12.13797 -12.07038 -11.98525 -11.96688 -11.81202 -11.55172 -11.45866 -10.94123 -10.46415 -10.02664 -9.66343 -9.33248 -8.02578 -5.35947 -0.31563 1.18432 1.27920 1.37296 1.39253 1.46370 1.82671 1.95062 2.47462 2.76003 3.28371 3.32274 3.44636 3.59730 3.73364 3.88708 3.92844 3.98279 4.02649 4.05712 4.18632 4.25132 4.33335 4.41609 4.47796 4.52308 4.59772 4.66478 4.69600 4.76601 4.77884 4.81914 4.88788 4.90344 4.92016 4.95418 5.01224 5.10533 5.15618 5.19439 5.23849 5.29211 5.33771 5.38866 5.40564 5.61673 5.77158 6.14104 6.21385 6.48810 6.87280 7.06959 7.82952 8.01604 9.18738 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011902 B = 0.003422 C = 0.002873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2351.963444 B = 8179.386742 C = 9742.871546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.075 3.925 3 N -0.500 5.500 4 C 0.222 3.778 5 C -0.006 4.006 6 C -0.138 4.138 7 C -0.141 4.141 8 O -0.184 6.184 9 C -0.142 4.142 10 C 0.606 3.394 11 O -0.525 6.525 12 N -0.594 5.594 13 C 0.100 3.900 14 C -0.137 4.137 15 C 0.176 3.824 16 H 0.052 0.948 17 N -0.751 5.751 18 C -0.226 4.226 19 H 0.062 0.938 20 C -0.061 4.061 21 N -0.983 5.983 22 Si 0.950 3.050 23 H -0.278 1.278 24 H -0.257 1.257 25 H -0.298 1.298 26 C -0.128 4.128 27 C 0.150 3.850 28 H 0.091 0.909 29 C -0.129 4.129 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.091 0.909 33 H 0.116 0.884 34 H 0.061 0.939 35 H 0.098 0.902 36 H 0.056 0.944 37 H 0.050 0.950 38 H 0.099 0.901 39 H 0.061 0.939 40 H 0.110 0.890 41 H 0.085 0.915 42 H 0.048 0.952 43 H 0.064 0.936 44 H 0.363 0.637 45 H 0.257 0.743 46 H 0.087 0.913 47 H 0.059 0.941 48 H 0.073 0.927 49 H 0.065 0.935 50 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.532 19.258 -10.048 25.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.049 4.049 3 N -0.229 5.229 4 C 0.017 3.983 5 C -0.025 4.025 6 C -0.196 4.196 7 C -0.198 4.198 8 O -0.073 6.073 9 C -0.196 4.196 10 C 0.394 3.606 11 O -0.405 6.405 12 N -0.326 5.326 13 C -0.022 4.022 14 C -0.178 4.178 15 C 0.068 3.932 16 H 0.070 0.930 17 N -0.393 5.393 18 C -0.357 4.357 19 H 0.080 0.920 20 C -0.253 4.253 21 N -0.633 5.633 22 Si 0.778 3.222 23 H -0.204 1.204 24 H -0.182 1.182 25 H -0.225 1.225 26 C -0.167 4.167 27 C 0.048 3.952 28 H 0.109 0.891 29 C -0.186 4.186 30 H 0.104 0.896 31 H 0.108 0.892 32 H 0.109 0.891 33 H 0.134 0.866 34 H 0.080 0.920 35 H 0.117 0.883 36 H 0.075 0.925 37 H 0.069 0.931 38 H 0.118 0.882 39 H 0.080 0.920 40 H 0.127 0.873 41 H 0.103 0.897 42 H 0.067 0.933 43 H 0.083 0.917 44 H 0.196 0.804 45 H 0.066 0.934 46 H 0.105 0.895 47 H 0.078 0.922 48 H 0.092 0.908 49 H 0.084 0.916 50 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -14.078 19.617 -10.192 26.208 hybrid contribution 0.442 -1.181 1.331 1.834 sum -13.636 18.435 -8.862 24.583 Atomic orbital electron populations 1.20419 0.84136 1.04737 1.04076 1.22441 0.99224 0.86400 0.96800 1.70315 1.00804 1.30913 1.20860 1.27612 0.96427 0.79964 0.94264 1.20119 0.89628 0.93179 0.99600 1.21832 1.04184 0.99222 0.94320 1.21843 1.04212 0.99240 0.94518 1.84623 1.29127 1.23498 1.70022 1.23079 0.81758 0.96358 1.18369 1.16627 0.85415 0.81463 0.77093 1.90867 1.16664 1.81006 1.51978 1.48161 1.06964 1.07031 1.70401 1.22330 0.78613 1.02513 0.98742 1.22407 1.00577 0.97900 0.96936 1.20384 0.91581 0.91461 0.89729 0.92962 1.42819 1.10956 1.74188 1.11386 1.19027 0.88142 1.30876 0.97634 0.92047 1.25426 0.96915 1.01609 1.01339 1.69867 1.13521 1.49064 1.30872 0.85480 0.78179 0.78601 0.79900 1.20449 1.18200 1.22470 1.22228 0.94534 1.02047 0.97891 1.21402 0.96335 0.79456 0.98004 0.89099 1.22088 0.91971 1.01046 1.03482 0.89558 0.89193 0.89068 0.86608 0.92030 0.88290 0.92530 0.93117 0.88241 0.91964 0.87305 0.89674 0.93267 0.91703 0.80377 0.93407 0.89481 0.92216 0.90801 0.91584 0.93107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.56 9.94 71.24 0.71 -0.85 16 2 C 0.08 1.91 7.16 41.83 0.30 2.21 16 3 N -0.50 -12.18 11.26 -291.06 -3.28 -15.46 16 4 C 0.22 4.86 6.82 88.29 0.60 5.46 16 5 C -0.01 -0.08 3.39 -11.54 -0.04 -0.12 16 6 C -0.14 -1.51 9.18 71.98 0.66 -0.85 16 7 C -0.14 -1.75 9.18 71.98 0.66 -1.09 16 8 O -0.18 -4.58 7.26 -7.09 -0.05 -4.63 16 9 C -0.14 -3.80 6.89 24.05 0.17 -3.64 16 10 C 0.61 16.91 7.47 86.46 0.65 17.56 16 11 O -0.53 -15.26 10.34 -4.30 -0.04 -15.31 16 12 N -0.59 -15.87 2.97 -799.62 -2.38 -18.25 16 13 C 0.10 2.63 6.34 86.36 0.55 3.18 16 14 C -0.14 -4.46 5.66 30.67 0.17 -4.29 16 15 C 0.18 6.28 2.73 45.02 0.12 6.40 16 16 H 0.05 1.93 8.08 -2.39 -0.02 1.91 16 17 N -0.75 -33.81 4.92 -322.81 -1.59 -35.40 16 18 C -0.23 -12.44 10.41 84.03 0.87 -11.57 16 19 H 0.06 3.68 8.06 -2.91 -0.02 3.66 16 20 C -0.06 -3.55 5.50 84.86 0.47 -3.08 16 21 N -0.98 -62.03 13.97 21.65 0.30 -61.73 16 22 Si 0.95 45.11 27.74 68.60 1.90 47.01 16 23 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 24 H -0.26 -11.17 6.52 99.48 0.65 -10.52 16 25 H -0.30 -14.40 7.11 99.48 0.71 -13.69 16 26 C -0.13 -3.72 4.84 30.67 0.15 -3.57 16 27 C 0.15 3.81 3.49 44.98 0.16 3.97 16 28 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 29 C -0.13 -3.08 7.61 71.98 0.55 -2.54 16 30 H 0.09 1.63 8.14 -2.38 -0.02 1.61 16 31 H 0.09 1.53 8.14 -2.38 -0.02 1.51 16 32 H 0.09 1.97 6.36 -2.39 -0.02 1.96 16 33 H 0.12 1.33 8.14 -2.38 -0.02 1.31 16 34 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 35 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 36 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 37 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 38 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 39 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.11 2.77 3.76 -53.11 -0.20 2.57 16 41 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 42 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 43 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 44 H 0.36 15.99 5.66 -92.71 -0.52 15.46 16 45 H 0.26 15.53 8.31 -92.70 -0.77 14.75 16 46 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 47 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 48 H 0.07 1.85 6.56 -2.39 -0.02 1.84 16 49 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 50 H 0.05 1.36 6.93 -2.39 -0.02 1.35 16 Total: -1.00 -68.91 389.79 1.77 -67.14 By element: Atomic # 1 Polarization: 29.29 SS G_CDS: 0.17 Total: 29.45 kcal Atomic # 6 Polarization: 0.43 SS G_CDS: 6.74 Total: 7.17 kcal Atomic # 7 Polarization: -123.90 SS G_CDS: -6.94 Total: -130.84 kcal Atomic # 8 Polarization: -19.84 SS G_CDS: -0.10 Total: -19.94 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 1.90 Total: 47.01 kcal Total: -68.91 1.77 -67.14 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044770652.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.955 kcal (2) G-P(sol) polarization free energy of solvation -68.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds