Wall clock time and date at job start Tue Mar 31 2020 19:07:41
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50697 * 1
3 3 O 1.34265 * 126.52333 * 2 1
4 4 C 1.34050 * 108.22478 * 179.87579 * 3 2 1
5 5 C 1.50699 * 125.37746 * 180.13271 * 4 3 2
6 6 C 1.53006 * 109.47083 * 300.30814 * 5 4 3
7 7 C 1.52999 * 109.47317 * 60.30253 * 5 4 3
8 8 N 1.29932 * 109.24451 * 0.39552 * 4 3 2
9 9 C 1.36065 * 108.47967 * 359.75804 * 8 4 3
10 10 C 1.47421 * 126.44973 * 180.02562 * 9 8 4
11 11 O 1.21619 * 119.99631 * 179.97438 * 10 9 8
12 12 N 1.34773 * 120.00209 * 359.97438 * 10 9 8
13 13 C 1.46497 * 119.99869 * 179.97438 * 12 10 9
14 14 H 1.08996 * 108.45060 * 327.31221 * 13 12 10
15 15 C 1.52574 * 108.51316 * 209.76488 * 13 12 10
16 16 C 1.50876 * 109.35668 * 153.73594 * 15 13 12
17 17 C 1.53944 * 110.09364 * 91.89094 * 16 15 13
18 18 N 1.47609 * 112.14379 * 319.43231 * 17 16 15
19 19 C 1.36939 * 118.64189 * 137.88994 * 18 17 16
20 20 H 1.08001 * 119.99532 * 206.46599 * 19 18 17
21 21 C 1.38809 * 120.00209 * 26.46715 * 19 18 17
22 22 N 1.31620 * 119.99771 * 15.66419 * 21 19 18
23 23 Si 1.86796 * 119.99908 * 195.66843 * 21 19 18
24 24 H 1.48493 * 109.47298 * 60.00025 * 23 21 19
25 25 H 1.48505 * 109.47119 * 180.02562 * 23 21 19
26 26 H 1.48501 * 109.47134 * 299.99474 * 23 21 19
27 27 C 1.44570 * 122.70891 * 317.87146 * 18 17 16
28 28 C 1.47097 * 108.51278 * 85.00564 * 13 12 10
29 29 H 1.08995 * 109.47121 * 269.68692 * 1 2 3
30 30 H 1.08997 * 109.47062 * 29.68720 * 1 2 3
31 31 H 1.08999 * 109.46886 * 149.68998 * 1 2 3
32 32 H 1.09000 * 109.47078 * 180.30788 * 5 4 3
33 33 H 1.08994 * 109.47020 * 59.99614 * 6 5 4
34 34 H 1.09000 * 109.47236 * 180.02562 * 6 5 4
35 35 H 1.08997 * 109.46738 * 299.99940 * 6 5 4
36 36 H 1.08994 * 109.47219 * 300.00652 * 7 5 4
37 37 H 1.09009 * 109.46616 * 59.99943 * 7 5 4
38 38 H 1.08998 * 109.47469 * 179.97438 * 7 5 4
39 39 H 0.96999 * 119.99758 * 0.02562 * 12 10 9
40 40 H 1.08997 * 109.49334 * 273.70954 * 15 13 12
41 41 H 1.09009 * 109.48407 * 33.77487 * 15 13 12
42 42 H 1.08993 * 109.37206 * 331.69617 * 16 15 13
43 43 H 1.09002 * 109.26335 * 212.01188 * 16 15 13
44 44 H 1.09003 * 108.94815 * 198.74506 * 17 16 15
45 45 H 1.09002 * 108.88177 * 80.07257 * 17 16 15
46 46 H 0.97005 * 119.99586 * 179.97438 * 22 21 19
47 47 H 1.08994 * 109.45292 * 330.68143 * 27 18 17
48 48 H 1.09006 * 109.42628 * 210.75381 * 27 18 17
49 49 H 1.09000 * 109.32361 * 304.31768 * 28 13 12
50 50 H 1.09006 * 109.32760 * 63.96145 * 28 13 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 8 2.3061 1.0790 0.0000
4 6 3.5788 0.6581 0.0028
5 6 4.7929 1.5508 0.0066
6 6 4.7757 2.4405 -1.2381
7 6 4.7774 2.4275 1.2603
8 7 3.6002 -0.6410 -0.0040
9 6 2.3171 -1.0936 -0.0059
10 6 1.8855 -2.5032 -0.0126
11 8 0.7003 -2.7762 -0.0132
12 7 2.8042 -3.4892 -0.0180
13 6 2.3752 -4.8900 -0.0240
14 1 1.4427 -4.9676 0.5349
15 6 3.4349 -5.7242 0.6894
16 6 2.7926 -6.9621 1.2653
17 6 2.8777 -8.1207 0.2553
18 7 2.6185 -7.6737 -1.1274
19 6 3.4064 -8.1640 -2.1344
20 1 3.5515 -7.5873 -3.0359
21 6 4.0185 -9.4022 -1.9964
22 7 3.6132 -10.2362 -1.0623
23 14 5.4176 -9.8846 -3.1363
24 1 6.5325 -8.9149 -2.9895
25 1 5.8954 -11.2460 -2.7848
26 1 4.9365 -9.8769 -4.5412
27 6 1.5669 -6.7399 -1.4623
28 6 2.1211 -5.2946 -1.4152
29 1 -0.3633 -0.0056 1.0276
30 1 -0.3633 0.8928 -0.5090
31 1 -0.3633 -0.8872 -0.5186
32 1 5.6944 0.9380 0.0027
33 1 3.8742 3.0532 -1.2342
34 1 5.6541 3.0859 -1.2356
35 1 4.7867 1.8160 -2.1313
36 1 3.8760 3.0402 1.2642
37 1 4.7897 1.7936 2.1471
38 1 5.6558 3.0729 1.2634
39 1 3.7494 -3.2714 -0.0171
40 1 4.2094 -6.0132 -0.0210
41 1 3.8791 -5.1373 1.4935
42 1 1.7466 -6.7551 1.4907
43 1 3.3112 -7.2430 2.1820
44 1 2.1437 -8.8801 0.5252
45 1 3.8744 -8.5592 0.3045
46 1 4.0408 -11.1016 -0.9662
47 1 0.7514 -6.8394 -0.7461
48 1 1.1974 -6.9544 -2.4652
49 1 1.3951 -4.6150 -1.8616
50 1 3.0523 -5.2494 -1.9800
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001052378469.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 19:07:41
Heat of formation + Delta-G solvation = -8.660192 kcal
Electronic energy + Delta-G solvation = -29650.520520 eV
Core-core repulsion = 25679.524346 eV
Total energy + Delta-G solvation = -3970.996174 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 335.200 amu
Computer time = 1.13 seconds
Orbital eigenvalues (eV)
-43.64917 -39.74061 -37.62369 -36.16390 -34.93347 -34.76523 -32.40524 -32.12419
-31.57146 -30.02077 -27.69236 -27.47597 -26.02771 -24.49194 -23.75917 -23.17025
-22.55659 -21.20894 -20.17720 -19.76063 -19.15521 -17.68204 -17.13983 -16.66953
-16.31151 -15.86115 -15.37530 -15.05274 -14.78721 -14.59200 -14.15219 -13.91010
-13.79108 -13.71462 -13.48469 -13.26239 -13.16077 -12.76452 -12.70798 -12.68134
-12.48763 -12.07425 -11.92538 -11.79830 -11.51854 -11.39623 -11.34315 -11.20456
-10.94577 -10.79409 -10.68370 -10.43787 -10.23870 -10.07735 -9.92514 -9.72213
-9.67749 -9.56463 -9.02012 -8.69773 -8.35090 -6.61438 -5.73622 -3.16940
0.95702 1.87761 2.24288 3.23268 3.37111 3.40647 3.46305 3.47632
3.60840 4.30138 4.52189 4.53379 4.53882 4.62424 4.84914 5.00341
5.12246 5.13913 5.22829 5.26084 5.29935 5.36232 5.38964 5.45280
5.51269 5.67256 5.67386 5.69941 5.71453 5.79348 5.85895 5.92080
6.07319 6.10682 6.25763 6.38819 6.52095 6.55126 6.69713 6.80980
6.86215 6.88688 6.96990 7.09839 7.29671 7.48370 7.74677 7.77517
7.86928 8.34141 8.52078 9.29145 9.96196 10.41456 11.33766
Molecular weight = 335.20amu
Principal moments of inertia in cm(-1)
A = 0.016585 B = 0.002579 C = 0.002407
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1687.855320 B =10854.453644 C =11629.375404
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.075 4.075
2 C 0.035 3.965
3 O -0.196 6.196
4 C 0.196 3.804
5 C 0.003 3.997
6 C -0.150 4.150
7 C -0.150 4.150
8 N -0.456 5.456
9 C -0.072 4.072
10 C 0.598 3.402
11 O -0.539 6.539
12 N -0.707 5.707
13 C 0.161 3.839
14 H 0.076 0.924
15 C -0.112 4.112
16 C -0.140 4.140
17 C 0.178 3.822
18 N -0.590 5.590
19 C -0.257 4.257
20 H 0.064 0.936
21 C 0.004 3.996
22 N -0.905 5.905
23 Si 0.900 3.100
24 H -0.285 1.285
25 H -0.291 1.291
26 H -0.283 1.283
27 C 0.163 3.837
28 C -0.154 4.154
29 H 0.090 0.910
30 H 0.078 0.922
31 H 0.114 0.886
32 H 0.115 0.885
33 H 0.063 0.937
34 H 0.074 0.926
35 H 0.063 0.937
36 H 0.063 0.937
37 H 0.062 0.938
38 H 0.074 0.926
39 H 0.404 0.596
40 H 0.081 0.919
41 H 0.050 0.950
42 H 0.047 0.953
43 H 0.056 0.944
44 H 0.025 0.975
45 H 0.074 0.926
46 H 0.253 0.747
47 H 0.034 0.966
48 H 0.049 0.951
49 H 0.052 0.948
50 H 0.062 0.938
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.015 25.773 4.946 26.243
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.131 4.131
2 C -0.022 4.022
3 O -0.083 6.083
4 C -0.013 4.013
5 C -0.016 4.016
6 C -0.208 4.208
7 C -0.208 4.208
8 N -0.185 5.185
9 C -0.192 4.192
10 C 0.383 3.617
11 O -0.417 6.417
12 N -0.356 5.356
13 C 0.059 3.941
14 H 0.094 0.906
15 C -0.150 4.150
16 C -0.179 4.179
17 C 0.053 3.947
18 N -0.312 5.312
19 C -0.387 4.387
20 H 0.082 0.918
21 C -0.194 4.194
22 N -0.549 5.549
23 Si 0.730 3.270
24 H -0.211 1.211
25 H -0.217 1.217
26 H -0.210 1.210
27 C 0.034 3.966
28 C -0.196 4.196
29 H 0.109 0.891
30 H 0.097 0.903
31 H 0.132 0.868
32 H 0.133 0.867
33 H 0.082 0.918
34 H 0.093 0.907
35 H 0.082 0.918
36 H 0.082 0.918
37 H 0.081 0.919
38 H 0.093 0.907
39 H 0.239 0.761
40 H 0.100 0.900
41 H 0.069 0.931
42 H 0.066 0.934
43 H 0.075 0.925
44 H 0.043 0.957
45 H 0.093 0.907
46 H 0.063 0.937
47 H 0.052 0.948
48 H 0.067 0.933
49 H 0.071 0.929
50 H 0.081 0.919
Dipole moment (debyes) X Y Z Total
from point charges -0.246 24.979 5.004 25.476
hybrid contribution 0.765 0.234 -0.582 0.989
sum 0.519 25.213 4.422 25.603
Atomic orbital electron populations
1.20588 0.82520 1.05367 1.04630 1.23754 0.95101 0.83299 1.00005
1.84281 1.17918 1.36253 1.69823 1.26147 0.84070 0.90131 1.00931
1.19776 0.89883 0.94281 0.97651 1.21902 1.03144 0.99488 0.96301
1.21899 1.03150 0.99575 0.96167 1.70751 1.21780 1.08921 1.17069
1.21650 0.88702 0.95925 1.12908 1.16703 0.85751 0.82435 0.76774
1.90768 1.16224 1.83168 1.51586 1.46311 1.09843 1.06650 1.72827
1.20101 0.98451 0.77602 0.97980 0.90597 1.21250 0.98453 0.96007
0.99282 1.21980 0.99289 0.97132 0.99545 1.21025 1.01613 0.90736
0.81363 1.43673 1.34518 1.49949 1.03030 1.19164 1.22702 0.98695
0.98105 0.91827 1.25018 1.00569 0.95343 0.98505 1.70065 1.41553
1.07706 1.35591 0.86409 0.82756 0.77262 0.80561 1.21110 1.21714
1.20974 1.20560 0.90190 0.87240 0.98582 1.21883 1.01712 1.00608
0.95388 0.89107 0.90319 0.86772 0.86672 0.91832 0.90736 0.91806
0.91837 0.91861 0.90739 0.76140 0.90036 0.93119 0.93383 0.92539
0.95667 0.90717 0.93683 0.94753 0.93308 0.92919 0.91903
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.07 -0.72 9.88 36.00 0.36 -0.36 16
2 C 0.03 0.43 7.44 -35.08 -0.26 0.17 16
3 O -0.20 -2.24 10.73 6.49 0.07 -2.17 16
4 C 0.20 2.18 6.81 -13.08 -0.09 2.09 16
5 C 0.00 0.02 3.39 -91.77 -0.31 -0.29 16
6 C -0.15 -0.87 9.18 37.16 0.34 -0.53 16
7 C -0.15 -0.84 9.18 37.16 0.34 -0.50 16
8 N -0.46 -6.22 11.06 -7.65 -0.08 -6.30 16
9 C -0.07 -1.04 6.99 -83.02 -0.58 -1.62 16
10 C 0.60 9.80 7.66 -12.52 -0.10 9.70 16
11 O -0.54 -9.75 14.31 5.26 0.08 -9.67 16
12 N -0.71 -11.32 4.88 -57.90 -0.28 -11.60 16
13 C 0.16 2.84 1.96 -70.98 -0.14 2.70 16
14 H 0.08 1.43 6.65 -51.93 -0.35 1.08 16
15 C -0.11 -1.98 5.00 -28.02 -0.14 -2.12 16
16 C -0.14 -2.64 5.71 -27.30 -0.16 -2.80 16
17 C 0.18 4.20 4.66 -2.94 -0.01 4.19 16
18 N -0.59 -14.55 2.27 -172.10 -0.39 -14.94 16
19 C -0.26 -6.96 9.44 -15.06 -0.14 -7.11 16
20 H 0.06 1.71 7.88 -52.49 -0.41 1.30 16
21 C 0.00 0.11 4.87 -17.43 -0.08 0.03 16
22 N -0.90 -26.10 11.01 55.49 0.61 -25.49 16
23 Si 0.90 21.73 29.58 -169.99 -5.03 16.70 16
24 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16
25 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16
26 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16
27 C 0.16 3.52 5.65 -4.09 -0.02 3.49 16
28 C -0.15 -2.95 5.20 -28.59 -0.15 -3.10 16
29 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16
30 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16
31 H 0.11 1.27 6.48 -51.93 -0.34 0.93 16
32 H 0.12 0.77 8.14 -51.93 -0.42 0.34 16
33 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16
34 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16
35 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16
36 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16
37 H 0.06 0.40 8.14 -51.92 -0.42 -0.03 16
38 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16
39 H 0.40 6.01 8.34 -40.82 -0.34 5.67 16
40 H 0.08 1.62 7.48 -51.93 -0.39 1.23 16
41 H 0.05 0.80 8.05 -51.92 -0.42 0.38 16
42 H 0.05 0.88 7.31 -51.93 -0.38 0.50 16
43 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16
44 H 0.03 0.65 8.03 -51.93 -0.42 0.23 16
45 H 0.07 1.96 6.33 -51.93 -0.33 1.63 16
46 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16
47 H 0.03 0.72 8.06 -51.93 -0.42 0.30 16
48 H 0.05 1.07 7.99 -51.93 -0.41 0.66 16
49 H 0.05 0.99 7.95 -51.93 -0.41 0.58 16
50 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16
LS Contribution 396.59 15.07 5.98 5.98
Total: -1.00 -31.35 396.59 -8.60 -39.95
By element:
Atomic # 1 Polarization: 11.99 SS G_CDS: -8.40 Total: 3.59 kcal
Atomic # 6 Polarization: 5.10 SS G_CDS: -1.15 Total: 3.95 kcal
Atomic # 7 Polarization: -58.18 SS G_CDS: -0.15 Total: -58.33 kcal
Atomic # 8 Polarization: -11.99 SS G_CDS: 0.14 Total: -11.84 kcal
Atomic # 14 Polarization: 21.73 SS G_CDS: -5.03 Total: 16.70 kcal
Total LS contribution 5.98 Total: 5.98 kcal
Total: -31.35 -8.60 -39.95 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001052378469.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 31.287 kcal
(2) G-P(sol) polarization free energy of solvation -31.346 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.059 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.601 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.947 kcal
(6) G-S(sol) free energy of system = (1) + (5) -8.660 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.13 seconds