Wall clock time and date at job start Tue Mar 31 2020 19:07:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 O 1.34250 * 126.52663 * 2 1 4 4 C 1.34049 * 108.22928 * 179.97438 * 3 2 1 5 5 C 1.50699 * 125.37868 * 180.02562 * 4 3 2 6 6 C 1.52995 * 109.47269 * 299.97416 * 5 4 3 7 7 C 1.52995 * 109.47449 * 59.97886 * 5 4 3 8 8 N 1.29938 * 109.24127 * 359.71809 * 4 3 2 9 9 C 1.36067 * 108.47500 * 0.44708 * 8 4 3 10 10 C 1.47420 * 126.44778 * 179.81962 * 9 8 4 11 11 O 1.21613 * 119.99877 * 179.68687 * 10 9 8 12 12 N 1.34776 * 120.00166 * 359.68924 * 10 9 8 13 13 C 1.46494 * 120.00350 * 179.97438 * 12 10 9 14 14 H 1.08999 * 109.20543 * 34.36201 * 13 12 10 15 15 C 1.50306 * 109.27246 * 153.78828 * 13 12 10 16 16 C 1.52518 * 105.33022 * 218.14629 * 15 13 12 17 17 C 1.46239 * 114.16370 * 270.40507 * 16 15 13 18 18 N 1.50172 * 107.53061 * 58.48314 * 17 16 15 19 19 C 1.36938 * 120.53542 * 109.61583 * 18 17 16 20 20 H 1.07996 * 119.99765 * 156.72440 * 19 18 17 21 21 C 1.38813 * 120.00166 * 336.71746 * 19 18 17 22 22 N 1.31623 * 119.99901 * 340.41413 * 21 19 18 23 23 Si 1.86797 * 120.00270 * 160.41357 * 21 19 18 24 24 H 1.48501 * 109.46790 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.47044 * 119.99821 * 23 21 19 26 26 H 1.48498 * 109.47193 * 240.00251 * 23 21 19 27 27 C 1.43428 * 118.92531 * 289.58993 * 18 17 16 28 28 C 1.54842 * 109.20907 * 275.00385 * 13 12 10 29 29 H 1.09001 * 109.46823 * 270.02968 * 1 2 3 30 30 H 1.09000 * 109.46510 * 30.02670 * 1 2 3 31 31 H 1.08997 * 109.46975 * 150.02395 * 1 2 3 32 32 H 1.09005 * 109.46878 * 179.97438 * 5 4 3 33 33 H 1.09000 * 109.47643 * 60.00117 * 6 5 4 34 34 H 1.09003 * 109.47196 * 180.02562 * 6 5 4 35 35 H 1.09006 * 109.47171 * 300.00359 * 6 5 4 36 36 H 1.09005 * 109.46671 * 299.99626 * 7 5 4 37 37 H 1.09003 * 109.47338 * 59.99310 * 7 5 4 38 38 H 1.08993 * 109.47547 * 180.02562 * 7 5 4 39 39 H 0.97001 * 119.99498 * 0.02562 * 12 10 9 40 40 H 1.09000 * 110.38457 * 99.14819 * 15 13 12 41 41 H 1.08998 * 110.19424 * 337.04485 * 15 13 12 42 42 H 1.09006 * 108.51887 * 149.24283 * 16 15 13 43 43 H 1.09002 * 108.52858 * 31.57256 * 16 15 13 44 44 H 1.09002 * 109.85001 * 177.99249 * 17 16 15 45 45 H 1.09001 * 109.84328 * 298.97981 * 17 16 15 46 46 H 0.97000 * 120.00054 * 179.97438 * 22 21 19 47 47 H 1.08992 * 108.16244 * 213.29003 * 27 18 17 48 48 H 1.09002 * 108.15969 * 330.06373 * 27 18 17 49 49 H 1.08997 * 109.36153 * 80.58083 * 28 13 12 50 50 H 1.08998 * 109.24913 * 320.92021 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.3061 1.0788 0.0000 4 6 3.5788 0.6580 0.0006 5 6 4.7930 1.5506 0.0013 6 6 4.7777 2.4336 -1.2481 7 6 4.7758 2.4340 1.2504 8 7 3.6003 -0.6412 0.0070 9 6 2.3170 -1.0937 0.0006 10 6 1.8853 -2.5032 0.0008 11 8 0.7002 -2.7762 0.0005 12 7 2.8040 -3.4894 0.0014 13 6 2.3751 -4.8901 0.0022 14 1 1.4577 -4.9845 -0.5788 15 6 3.4470 -5.7375 -0.6240 16 6 2.7036 -6.7915 -1.4380 17 6 2.3856 -8.0090 -0.6929 18 7 1.5484 -7.6106 0.4885 19 6 0.2194 -7.9365 0.5410 20 1 -0.2841 -7.9982 1.4944 21 6 -0.4806 -8.1875 -0.6311 22 7 -0.0133 -7.7534 -1.7825 23 14 -2.0856 -9.1415 -0.5746 24 1 -2.3899 -9.5153 0.8300 25 1 -3.1826 -8.2968 -1.1114 26 1 -1.9598 -10.3713 -1.3974 27 6 2.1635 -6.8837 1.5611 28 6 2.1039 -5.3391 1.4591 29 1 -0.3633 0.0005 1.0277 30 1 -0.3632 0.8898 -0.5143 31 1 -0.3633 -0.8902 -0.5134 32 1 5.6945 0.9378 0.0021 33 1 3.8762 3.0464 -1.2490 34 1 5.6561 3.0789 -1.2477 35 1 4.7899 1.8041 -2.1380 36 1 3.8744 3.0468 1.2495 37 1 4.7867 1.8050 2.1405 38 1 5.6537 3.0800 1.2507 39 1 3.7492 -3.2716 0.0021 40 1 4.0528 -6.2141 0.1467 41 1 4.0739 -5.1298 -1.2764 42 1 3.3175 -7.0619 -2.2972 43 1 1.7733 -6.3555 -1.8021 44 1 1.8264 -8.6962 -1.3278 45 1 3.3050 -8.4845 -0.3513 46 1 -0.5022 -7.9291 -2.6016 47 1 1.6827 -7.1814 2.4928 48 1 3.2118 -7.1776 1.6134 49 1 1.1162 -4.9946 1.7654 50 1 2.8578 -4.9043 2.1153 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052378470.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:07:46 Heat of formation + Delta-G solvation = -0.474631 kcal Electronic energy + Delta-G solvation = -30012.591013 eV Core-core repulsion = 26041.949792 eV Total energy + Delta-G solvation = -3970.641221 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -43.53921 -39.42837 -37.60149 -36.10524 -34.80982 -34.56392 -32.19381 -31.97861 -31.50579 -29.89701 -27.65017 -27.37332 -26.05905 -24.36185 -23.77014 -22.99566 -22.34846 -21.04797 -20.24210 -19.51495 -18.99579 -17.52287 -17.03124 -16.64382 -16.18901 -15.58419 -15.17346 -15.01090 -14.70532 -14.47402 -14.04812 -13.85084 -13.70267 -13.67703 -13.41228 -13.12995 -13.01883 -12.64122 -12.63135 -12.37112 -12.17437 -12.00402 -11.78663 -11.74935 -11.47377 -11.44631 -11.25671 -11.20744 -10.85147 -10.74959 -10.54274 -10.30230 -10.18650 -9.99779 -9.73385 -9.53772 -9.43641 -9.28731 -8.86971 -8.48754 -8.28584 -6.64550 -5.71721 -3.10254 1.08723 1.99955 2.34694 3.40695 3.43672 3.52010 3.54086 3.56463 3.73844 4.37174 4.58136 4.58376 4.63897 4.72195 4.97189 5.12309 5.16050 5.22377 5.34126 5.40132 5.40949 5.43699 5.45544 5.50237 5.63742 5.75115 5.75562 5.78718 5.80134 5.95779 5.98873 6.06583 6.10266 6.33381 6.37097 6.48630 6.54680 6.77113 6.93206 6.94970 6.99952 7.07977 7.18298 7.28345 7.42171 7.64835 7.82027 7.98035 8.03538 8.50070 8.58441 9.26537 9.94027 10.46496 11.36029 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.019101 B = 0.002757 C = 0.002585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.520244 B =10154.048402 C =10829.084570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.034 3.966 3 O -0.196 6.196 4 C 0.192 3.808 5 C 0.005 3.995 6 C -0.150 4.150 7 C -0.150 4.150 8 N -0.457 5.457 9 C -0.070 4.070 10 C 0.594 3.406 11 O -0.527 6.527 12 N -0.709 5.709 13 C 0.155 3.845 14 H 0.105 0.895 15 C -0.121 4.121 16 C -0.129 4.129 17 C 0.165 3.835 18 N -0.588 5.588 19 C -0.246 4.246 20 H 0.067 0.933 21 C 0.002 3.998 22 N -0.899 5.899 23 Si 0.899 3.101 24 H -0.280 1.280 25 H -0.292 1.292 26 H -0.291 1.291 27 C 0.162 3.838 28 C -0.151 4.151 29 H 0.091 0.909 30 H 0.077 0.923 31 H 0.115 0.885 32 H 0.114 0.886 33 H 0.063 0.937 34 H 0.073 0.927 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.062 0.938 38 H 0.073 0.927 39 H 0.399 0.601 40 H 0.063 0.937 41 H 0.053 0.947 42 H 0.030 0.970 43 H 0.103 0.897 44 H 0.091 0.909 45 H 0.006 0.994 46 H 0.251 0.749 47 H 0.034 0.966 48 H 0.029 0.971 49 H 0.056 0.944 50 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.980 19.954 2.439 22.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.022 4.022 3 O -0.083 6.083 4 C -0.017 4.017 5 C -0.015 4.015 6 C -0.208 4.208 7 C -0.208 4.208 8 N -0.186 5.186 9 C -0.190 4.190 10 C 0.378 3.622 11 O -0.404 6.404 12 N -0.358 5.358 13 C 0.052 3.948 14 H 0.122 0.878 15 C -0.159 4.159 16 C -0.168 4.168 17 C 0.041 3.959 18 N -0.310 5.310 19 C -0.376 4.376 20 H 0.085 0.915 21 C -0.196 4.196 22 N -0.545 5.545 23 Si 0.730 3.270 24 H -0.205 1.205 25 H -0.219 1.219 26 H -0.218 1.218 27 C 0.032 3.968 28 C -0.193 4.193 29 H 0.109 0.891 30 H 0.096 0.904 31 H 0.134 0.866 32 H 0.132 0.868 33 H 0.082 0.918 34 H 0.092 0.908 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.092 0.908 39 H 0.233 0.767 40 H 0.082 0.918 41 H 0.072 0.928 42 H 0.048 0.952 43 H 0.121 0.879 44 H 0.109 0.891 45 H 0.024 0.976 46 H 0.061 0.939 47 H 0.052 0.948 48 H 0.047 0.953 49 H 0.075 0.925 50 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 10.571 19.296 2.287 22.120 hybrid contribution -0.922 0.269 -0.061 0.962 sum 9.649 19.564 2.226 21.928 Atomic orbital electron populations 1.20607 0.82474 1.05431 1.04669 1.23773 0.95114 0.83263 1.00044 1.84267 1.17875 1.36307 1.69893 1.26112 0.84110 0.90174 1.01283 1.19745 0.89896 0.94241 0.97588 1.21899 1.03105 0.99535 0.96275 1.21899 1.03114 0.99520 0.96268 1.70733 1.21913 1.08870 1.17080 1.21740 0.88557 0.96110 1.12567 1.16737 0.85951 0.82344 0.77181 1.90831 1.16117 1.82937 1.50483 1.46318 1.09297 1.06961 1.73213 1.21380 0.99231 0.76353 0.97817 0.87750 1.21399 0.97037 0.98077 0.99414 1.20934 1.01030 0.97704 0.97135 1.20172 0.91455 0.95388 0.88845 1.44285 1.06913 1.60137 1.19627 1.19236 0.85704 1.40341 0.92302 0.91483 1.24884 0.97669 1.01010 0.96015 1.69973 1.39866 1.46830 0.97798 0.86262 0.83658 0.79720 0.77378 1.20468 1.21921 1.21764 1.20351 0.95557 0.88647 0.92201 1.23317 1.00473 1.00695 0.94841 0.89085 0.90389 0.86631 0.86787 0.91826 0.90810 0.91837 0.91835 0.91864 0.90810 0.76696 0.91813 0.92795 0.95174 0.87899 0.89124 0.97573 0.93869 0.94802 0.95317 0.92506 0.93690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.88 9.88 36.01 0.36 -0.53 16 2 C 0.03 0.48 7.44 -35.08 -0.26 0.22 16 3 O -0.20 -2.47 10.73 6.53 0.07 -2.40 16 4 C 0.19 2.30 6.81 -13.08 -0.09 2.21 16 5 C 0.00 0.04 3.39 -91.78 -0.31 -0.28 16 6 C -0.15 -0.93 9.17 37.15 0.34 -0.59 16 7 C -0.15 -0.92 9.18 37.16 0.34 -0.58 16 8 N -0.46 -6.63 11.06 -7.65 -0.08 -6.71 16 9 C -0.07 -1.12 6.99 -83.02 -0.58 -1.70 16 10 C 0.59 11.13 7.78 -12.52 -0.10 11.03 16 11 O -0.53 -11.44 14.45 5.27 0.08 -11.36 16 12 N -0.71 -12.56 4.95 -55.25 -0.27 -12.83 16 13 C 0.15 3.11 2.24 -68.31 -0.15 2.96 16 14 H 0.10 2.63 6.22 -51.93 -0.32 2.30 16 15 C -0.12 -2.24 5.35 -28.32 -0.15 -2.39 16 16 C -0.13 -2.78 5.02 -30.19 -0.15 -2.94 16 17 C 0.16 3.85 5.24 -5.20 -0.03 3.82 16 18 N -0.59 -14.56 2.60 -175.08 -0.46 -15.02 16 19 C -0.25 -6.76 9.63 -15.06 -0.14 -6.91 16 20 H 0.07 1.85 7.89 -52.49 -0.41 1.44 16 21 C 0.00 0.06 4.91 -17.43 -0.09 -0.03 16 22 N -0.90 -25.29 9.43 55.49 0.52 -24.77 16 23 Si 0.90 22.02 29.60 -169.99 -5.03 16.99 16 24 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 25 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 26 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 27 C 0.16 3.47 5.18 -4.66 -0.02 3.45 16 28 C -0.15 -3.06 6.00 -24.75 -0.15 -3.21 16 29 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.12 1.59 6.48 -51.93 -0.34 1.26 16 32 H 0.11 0.79 8.14 -51.93 -0.42 0.36 16 33 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 39 H 0.40 6.22 8.24 -40.82 -0.34 5.88 16 40 H 0.06 1.12 6.27 -51.93 -0.33 0.80 16 41 H 0.05 0.89 7.87 -51.93 -0.41 0.48 16 42 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 43 H 0.10 2.62 5.29 -51.93 -0.27 2.34 16 44 H 0.09 2.36 6.05 -51.93 -0.31 2.05 16 45 H 0.01 0.13 8.12 -51.93 -0.42 -0.29 16 46 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 47 H 0.03 0.73 7.99 -51.93 -0.41 0.31 16 48 H 0.03 0.56 6.87 -51.93 -0.36 0.20 16 49 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 50 H 0.04 0.81 8.12 -51.93 -0.42 0.39 16 LS Contribution 391.60 15.07 5.90 5.90 Total: -1.00 -31.32 391.60 -8.59 -39.91 By element: Atomic # 1 Polarization: 13.88 SS G_CDS: -8.13 Total: 5.75 kcal Atomic # 6 Polarization: 5.72 SS G_CDS: -1.19 Total: 4.54 kcal Atomic # 7 Polarization: -59.04 SS G_CDS: -0.29 Total: -59.33 kcal Atomic # 8 Polarization: -13.91 SS G_CDS: 0.15 Total: -13.76 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.03 Total: 16.99 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -31.32 -8.59 -39.91 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052378470.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.437 kcal (2) G-P(sol) polarization free energy of solvation -31.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds