Wall clock time and date at job start Tue Mar 31 2020 20:13:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.33697 * 126.27386 * 2 1 4 4 C 1.30615 * 108.99729 * 179.97438 * 3 2 1 5 5 C 1.50697 * 125.42335 * 180.02562 * 4 3 2 6 6 C 1.53005 * 109.46918 * 299.97005 * 5 4 3 7 7 C 1.52999 * 109.47404 * 59.96967 * 5 4 3 8 8 O 1.33669 * 109.15215 * 359.72450 * 4 3 2 9 9 C 1.35344 * 107.68564 * 0.43699 * 8 4 3 10 10 C 1.46721 * 126.64433 * 179.83364 * 9 8 4 11 11 O 1.21680 * 119.99902 * 179.68822 * 10 9 8 12 12 N 1.34776 * 120.00168 * 359.69057 * 10 9 8 13 13 C 1.46494 * 120.00350 * 179.97438 * 12 10 9 14 14 H 1.08999 * 109.20543 * 34.36201 * 13 12 10 15 15 C 1.50306 * 109.27246 * 153.78828 * 13 12 10 16 16 C 1.52518 * 105.33022 * 218.14629 * 15 13 12 17 17 C 1.46239 * 114.16370 * 270.40507 * 16 15 13 18 18 N 1.50172 * 107.53061 * 58.48314 * 17 16 15 19 19 C 1.36938 * 120.53542 * 109.61583 * 18 17 16 20 20 H 1.07996 * 119.99765 * 156.72440 * 19 18 17 21 21 C 1.38813 * 120.00166 * 336.71746 * 19 18 17 22 22 N 1.31623 * 119.99901 * 340.41413 * 21 19 18 23 23 Si 1.86797 * 120.00270 * 160.41357 * 21 19 18 24 24 H 1.48501 * 109.46790 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.47044 * 119.99821 * 23 21 19 26 26 H 1.48498 * 109.47193 * 240.00251 * 23 21 19 27 27 C 1.43428 * 118.92531 * 289.58993 * 18 17 16 28 28 C 1.54842 * 109.20907 * 275.00385 * 13 12 10 29 29 H 1.08998 * 109.47038 * 270.04150 * 1 2 3 30 30 H 1.09002 * 109.46885 * 30.04602 * 1 2 3 31 31 H 1.09003 * 109.47031 * 150.04235 * 1 2 3 32 32 H 1.09006 * 109.47049 * 179.97438 * 5 4 3 33 33 H 1.09001 * 109.46683 * 59.99922 * 6 5 4 34 34 H 1.08998 * 109.46791 * 180.02562 * 6 5 4 35 35 H 1.08996 * 109.47171 * 300.00485 * 6 5 4 36 36 H 1.08996 * 109.46903 * 300.00289 * 7 5 4 37 37 H 1.09003 * 109.47101 * 59.99934 * 7 5 4 38 38 H 1.08992 * 109.47074 * 180.02562 * 7 5 4 39 39 H 0.97001 * 119.99498 * 0.02562 * 12 10 9 40 40 H 1.09000 * 110.38457 * 99.14819 * 15 13 12 41 41 H 1.08998 * 110.19424 * 337.04485 * 15 13 12 42 42 H 1.09006 * 108.51887 * 149.24283 * 16 15 13 43 43 H 1.09002 * 108.52858 * 31.57256 * 16 15 13 44 44 H 1.09002 * 109.85001 * 177.99249 * 17 16 15 45 45 H 1.09001 * 109.84328 * 298.97981 * 17 16 15 46 46 H 0.97000 * 120.00054 * 179.97438 * 22 21 19 47 47 H 1.08992 * 108.16244 * 213.29003 * 27 18 17 48 48 H 1.09002 * 108.15969 * 330.06373 * 27 18 17 49 49 H 1.08997 * 109.36153 * 80.58083 * 28 13 12 50 50 H 1.08998 * 109.24913 * 320.92021 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2980 1.0779 0.0000 4 6 3.5452 0.6900 0.0006 5 6 4.7440 1.6032 0.0013 6 6 4.7136 2.4856 -1.2483 7 6 4.7116 2.4863 1.2503 8 8 3.5890 -0.6460 0.0070 9 6 2.3137 -1.0992 0.0007 10 6 1.8827 -2.5017 0.0009 11 8 0.6967 -2.7737 0.0006 12 7 2.8004 -3.4887 0.0016 13 6 2.3702 -4.8890 0.0024 14 1 1.4527 -4.9826 -0.5786 15 6 3.4413 -5.7375 -0.6237 16 6 2.6970 -6.7908 -1.4377 17 6 2.3778 -8.0079 -0.6926 18 7 1.5409 -7.6087 0.4887 19 6 0.2116 -7.9334 0.5412 20 1 -0.2920 -7.9945 1.4946 21 6 -0.4885 -8.1838 -0.6309 22 7 -0.0208 -7.7500 -1.7823 23 14 -2.0945 -9.1362 -0.5744 24 1 -2.3992 -9.5097 0.8302 25 1 -3.1907 -8.2904 -1.1113 26 1 -1.9698 -10.3661 -1.3971 27 6 2.1566 -6.8823 1.5613 28 6 2.0985 -5.3377 1.4593 29 1 -0.3633 0.0007 1.0276 30 1 -0.3633 0.8896 -0.5146 31 1 -0.3633 -0.8904 -0.5132 32 1 5.6558 1.0058 0.0021 33 1 3.8017 3.0829 -1.2491 34 1 5.5809 3.1458 -1.2479 35 1 4.7365 1.8565 -2.1380 36 1 3.7999 3.0836 1.2494 37 1 4.7333 1.8576 2.1405 38 1 5.5784 3.1471 1.2505 39 1 3.7459 -3.2718 0.0023 40 1 4.0467 -6.2146 0.1470 41 1 4.0688 -5.1304 -1.2761 42 1 3.3107 -7.0617 -2.2969 43 1 1.7671 -6.3539 -1.8019 44 1 1.8179 -8.6946 -1.3275 45 1 3.2967 -8.4843 -0.3509 46 1 -0.5099 -7.9253 -2.6014 47 1 1.6756 -7.1795 2.4931 48 1 3.2047 -7.1772 1.6137 49 1 1.1111 -4.9923 1.7656 50 1 2.8528 -4.9036 2.1155 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052778708.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:13:05 Heat of formation + Delta-G solvation = 0.835855 kcal Electronic energy + Delta-G solvation = -30039.108258 eV Core-core repulsion = 26068.523864 eV Total energy + Delta-G solvation = -3970.584394 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -43.54027 -39.57281 -37.69491 -36.19008 -35.39381 -34.55666 -32.32521 -31.58211 -31.08289 -29.96226 -27.79868 -27.62058 -26.12275 -24.62077 -23.94905 -23.05683 -21.73135 -20.77829 -20.51313 -19.97071 -19.14179 -17.88086 -17.02481 -16.72493 -16.40143 -15.67127 -15.07903 -14.85024 -14.67769 -14.49835 -14.22719 -13.87228 -13.74238 -13.49107 -13.25843 -13.18870 -13.12385 -12.60776 -12.48982 -12.39401 -12.24735 -12.05623 -11.87080 -11.73572 -11.49444 -11.48725 -11.24701 -11.03647 -10.86101 -10.78507 -10.64136 -10.35823 -10.29254 -10.07363 -9.79889 -9.66648 -9.50400 -9.34815 -8.94279 -8.59354 -8.36145 -6.69437 -5.75778 -3.14484 0.79945 2.27265 2.31901 3.26671 3.33697 3.41614 3.50265 3.52109 3.72114 4.40256 4.55270 4.57489 4.57876 4.73199 4.91344 5.21344 5.24347 5.32736 5.36068 5.39531 5.40511 5.49152 5.53108 5.54424 5.66923 5.71185 5.77354 5.79285 5.84073 5.86847 5.93905 6.00144 6.24694 6.26134 6.31671 6.39904 6.45816 6.68057 6.81048 6.87901 6.92745 6.98982 7.07493 7.21260 7.45114 7.59478 7.75317 7.78553 7.98237 8.33245 8.45900 9.22397 9.89796 10.41854 11.32036 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.019251 B = 0.002758 C = 0.002589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.116574 B =10148.830432 C =10812.645173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.074 3.926 3 N -0.482 5.482 4 C 0.215 3.785 5 C 0.002 3.998 6 C -0.144 4.144 7 C -0.144 4.144 8 O -0.189 6.189 9 C -0.111 4.111 10 C 0.600 3.400 11 O -0.503 6.503 12 N -0.714 5.714 13 C 0.154 3.846 14 H 0.107 0.893 15 C -0.121 4.121 16 C -0.129 4.129 17 C 0.164 3.836 18 N -0.588 5.588 19 C -0.248 4.248 20 H 0.068 0.932 21 C 0.003 3.997 22 N -0.900 5.900 23 Si 0.900 3.100 24 H -0.279 1.279 25 H -0.292 1.292 26 H -0.291 1.291 27 C 0.162 3.838 28 C -0.152 4.152 29 H 0.081 0.919 30 H 0.074 0.926 31 H 0.098 0.902 32 H 0.099 0.901 33 H 0.070 0.930 34 H 0.073 0.927 35 H 0.060 0.940 36 H 0.070 0.930 37 H 0.059 0.941 38 H 0.073 0.927 39 H 0.395 0.605 40 H 0.064 0.936 41 H 0.053 0.947 42 H 0.031 0.969 43 H 0.103 0.897 44 H 0.091 0.909 45 H 0.006 0.994 46 H 0.252 0.748 47 H 0.035 0.965 48 H 0.029 0.971 49 H 0.058 0.942 50 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.644 17.819 2.442 21.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.050 4.050 3 N -0.212 5.212 4 C 0.009 3.991 5 C -0.018 4.018 6 C -0.202 4.202 7 C -0.202 4.202 8 O -0.076 6.076 9 C -0.166 4.166 10 C 0.384 3.616 11 O -0.379 6.379 12 N -0.363 5.363 13 C 0.052 3.948 14 H 0.125 0.875 15 C -0.160 4.160 16 C -0.168 4.168 17 C 0.041 3.959 18 N -0.310 5.310 19 C -0.377 4.377 20 H 0.086 0.914 21 C -0.195 4.195 22 N -0.545 5.545 23 Si 0.730 3.270 24 H -0.204 1.204 25 H -0.219 1.219 26 H -0.217 1.217 27 C 0.032 3.968 28 C -0.194 4.194 29 H 0.099 0.901 30 H 0.093 0.907 31 H 0.116 0.884 32 H 0.118 0.882 33 H 0.089 0.911 34 H 0.092 0.908 35 H 0.079 0.921 36 H 0.089 0.911 37 H 0.078 0.922 38 H 0.092 0.908 39 H 0.229 0.771 40 H 0.083 0.917 41 H 0.072 0.928 42 H 0.049 0.951 43 H 0.121 0.879 44 H 0.109 0.891 45 H 0.025 0.975 46 H 0.062 0.938 47 H 0.053 0.947 48 H 0.047 0.953 49 H 0.076 0.924 50 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 11.558 18.104 2.283 21.600 hybrid contribution -0.102 -0.844 -0.057 0.852 sum 11.457 17.260 2.226 20.835 Atomic orbital electron populations 1.20389 0.85256 1.04405 1.03697 1.22059 0.98347 0.86364 0.98188 1.70240 1.00261 1.31110 1.19558 1.26493 0.95652 0.79281 0.97698 1.19735 0.90443 0.93122 0.98487 1.21849 1.03477 0.99397 0.95447 1.21848 1.03490 0.99382 0.95443 1.84437 1.30062 1.23627 1.69488 1.23259 0.80982 0.96789 1.15537 1.16378 0.86256 0.81111 0.77866 1.90916 1.15558 1.81409 1.50060 1.46465 1.08903 1.07453 1.73516 1.21454 0.99404 0.75875 0.98085 0.87500 1.21408 0.96998 0.98105 0.99444 1.20937 1.01037 0.97711 0.97148 1.20176 0.91497 0.95364 0.88863 1.44286 1.06909 1.60142 1.19620 1.19235 0.85637 1.40517 0.92331 0.91446 1.24886 0.97702 1.00933 0.95994 1.69964 1.39889 1.46801 0.97827 0.86258 0.83612 0.79705 0.77415 1.20444 1.21869 1.21736 1.20350 0.95593 0.88521 0.92295 1.23335 1.00586 1.00909 0.94590 0.90090 0.90688 0.88387 0.88237 0.91052 0.90828 0.92121 0.91061 0.92151 0.90827 0.77146 0.91704 0.92815 0.95081 0.87851 0.89066 0.97543 0.93818 0.94697 0.95296 0.92361 0.93649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.08 9.87 36.01 0.36 -0.73 16 2 C 0.07 1.12 7.16 -82.46 -0.59 0.53 16 3 N -0.48 -6.62 11.26 -7.07 -0.08 -6.70 16 4 C 0.21 2.57 6.82 -12.80 -0.09 2.48 16 5 C 0.00 0.01 3.39 -91.77 -0.31 -0.30 16 6 C -0.14 -0.94 9.18 37.16 0.34 -0.60 16 7 C -0.14 -0.93 9.18 37.16 0.34 -0.58 16 8 O -0.19 -2.57 10.57 4.41 0.05 -2.52 16 9 C -0.11 -1.73 7.18 -36.84 -0.26 -2.00 16 10 C 0.60 10.69 7.75 -12.83 -0.10 10.59 16 11 O -0.50 -10.65 14.44 5.21 0.08 -10.57 16 12 N -0.71 -11.68 4.95 -55.47 -0.27 -11.95 16 13 C 0.15 2.94 2.24 -68.31 -0.15 2.79 16 14 H 0.11 2.59 6.22 -51.93 -0.32 2.27 16 15 C -0.12 -2.13 5.35 -28.32 -0.15 -2.28 16 16 C -0.13 -2.70 5.02 -30.19 -0.15 -2.85 16 17 C 0.16 3.74 5.24 -5.20 -0.03 3.71 16 18 N -0.59 -14.23 2.60 -175.08 -0.46 -14.69 16 19 C -0.25 -6.69 9.63 -15.06 -0.14 -6.84 16 20 H 0.07 1.84 7.89 -52.49 -0.41 1.42 16 21 C 0.00 0.08 4.91 -17.43 -0.09 -0.01 16 22 N -0.90 -24.93 9.43 55.49 0.52 -24.41 16 23 Si 0.90 21.81 29.60 -169.99 -5.03 16.78 16 24 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 25 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 26 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 27 C 0.16 3.36 5.18 -4.66 -0.02 3.34 16 28 C -0.15 -2.95 6.00 -24.75 -0.15 -3.09 16 29 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 30 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 31 H 0.10 1.48 6.47 -51.93 -0.34 1.15 16 32 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 39 H 0.39 5.35 8.30 -40.82 -0.34 5.01 16 40 H 0.06 1.08 6.27 -51.93 -0.33 0.75 16 41 H 0.05 0.83 7.87 -51.93 -0.41 0.42 16 42 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.10 2.56 5.29 -51.93 -0.27 2.28 16 44 H 0.09 2.33 6.05 -51.93 -0.31 2.02 16 45 H 0.01 0.14 8.12 -51.93 -0.42 -0.29 16 46 H 0.25 6.86 8.31 -40.82 -0.34 6.52 16 47 H 0.03 0.73 7.99 -51.93 -0.41 0.31 16 48 H 0.03 0.54 6.87 -51.93 -0.36 0.19 16 49 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 50 H 0.04 0.77 8.12 -51.93 -0.42 0.35 16 LS Contribution 391.58 15.07 5.90 5.90 Total: -1.00 -30.51 391.58 -8.63 -39.14 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: -8.13 Total: 4.85 kcal Atomic # 6 Polarization: 5.37 SS G_CDS: -1.20 Total: 4.17 kcal Atomic # 7 Polarization: -57.46 SS G_CDS: -0.29 Total: -57.75 kcal Atomic # 8 Polarization: -13.22 SS G_CDS: 0.12 Total: -13.09 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.03 Total: 16.78 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -30.51 -8.63 -39.14 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052778708.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.978 kcal (2) G-P(sol) polarization free energy of solvation -30.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.142 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds