Wall clock time and date at job start Tue Mar 31 2020 20:13:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.33697 * 126.27386 * 2 1 4 4 C 1.30615 * 108.99729 * 179.97438 * 3 2 1 5 5 C 1.50697 * 125.42335 * 180.02562 * 4 3 2 6 6 C 1.53005 * 109.46918 * 299.97005 * 5 4 3 7 7 C 1.52999 * 109.47404 * 59.96967 * 5 4 3 8 8 O 1.33669 * 109.15215 * 359.72450 * 4 3 2 9 9 C 1.35344 * 107.68564 * 0.43699 * 8 4 3 10 10 C 1.46721 * 126.64433 * 179.83364 * 9 8 4 11 11 O 1.21680 * 119.99902 * 179.68822 * 10 9 8 12 12 N 1.34776 * 120.00168 * 359.69057 * 10 9 8 13 13 C 1.46494 * 120.00350 * 179.97438 * 12 10 9 14 14 H 1.08999 * 109.20543 * 34.36201 * 13 12 10 15 15 C 1.50306 * 109.27246 * 153.78828 * 13 12 10 16 16 C 1.52518 * 105.33022 * 218.14629 * 15 13 12 17 17 C 1.46239 * 114.16370 * 270.40507 * 16 15 13 18 18 N 1.50172 * 107.53061 * 58.48314 * 17 16 15 19 19 C 1.36938 * 120.53542 * 109.61583 * 18 17 16 20 20 H 1.07996 * 119.99765 * 156.72440 * 19 18 17 21 21 C 1.38813 * 120.00166 * 336.71746 * 19 18 17 22 22 N 1.31623 * 119.99901 * 340.41413 * 21 19 18 23 23 Si 1.86797 * 120.00270 * 160.41357 * 21 19 18 24 24 H 1.48501 * 109.46790 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.47044 * 119.99821 * 23 21 19 26 26 H 1.48498 * 109.47193 * 240.00251 * 23 21 19 27 27 C 1.43428 * 118.92531 * 289.58993 * 18 17 16 28 28 C 1.54842 * 109.20907 * 275.00385 * 13 12 10 29 29 H 1.08998 * 109.47038 * 270.04150 * 1 2 3 30 30 H 1.09002 * 109.46885 * 30.04602 * 1 2 3 31 31 H 1.09003 * 109.47031 * 150.04235 * 1 2 3 32 32 H 1.09006 * 109.47049 * 179.97438 * 5 4 3 33 33 H 1.09001 * 109.46683 * 59.99922 * 6 5 4 34 34 H 1.08998 * 109.46791 * 180.02562 * 6 5 4 35 35 H 1.08996 * 109.47171 * 300.00485 * 6 5 4 36 36 H 1.08996 * 109.46903 * 300.00289 * 7 5 4 37 37 H 1.09003 * 109.47101 * 59.99934 * 7 5 4 38 38 H 1.08992 * 109.47074 * 180.02562 * 7 5 4 39 39 H 0.97001 * 119.99498 * 0.02562 * 12 10 9 40 40 H 1.09000 * 110.38457 * 99.14819 * 15 13 12 41 41 H 1.08998 * 110.19424 * 337.04485 * 15 13 12 42 42 H 1.09006 * 108.51887 * 149.24283 * 16 15 13 43 43 H 1.09002 * 108.52858 * 31.57256 * 16 15 13 44 44 H 1.09002 * 109.85001 * 177.99249 * 17 16 15 45 45 H 1.09001 * 109.84328 * 298.97981 * 17 16 15 46 46 H 0.97000 * 120.00054 * 179.97438 * 22 21 19 47 47 H 1.08992 * 108.16244 * 213.29003 * 27 18 17 48 48 H 1.09002 * 108.15969 * 330.06373 * 27 18 17 49 49 H 1.08997 * 109.36153 * 80.58083 * 28 13 12 50 50 H 1.08998 * 109.24913 * 320.92021 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2980 1.0779 0.0000 4 6 3.5452 0.6900 0.0006 5 6 4.7440 1.6032 0.0013 6 6 4.7136 2.4856 -1.2483 7 6 4.7116 2.4863 1.2503 8 8 3.5890 -0.6460 0.0070 9 6 2.3137 -1.0992 0.0007 10 6 1.8827 -2.5017 0.0009 11 8 0.6967 -2.7737 0.0006 12 7 2.8004 -3.4887 0.0016 13 6 2.3702 -4.8890 0.0024 14 1 1.4527 -4.9826 -0.5786 15 6 3.4413 -5.7375 -0.6237 16 6 2.6970 -6.7908 -1.4377 17 6 2.3778 -8.0079 -0.6926 18 7 1.5409 -7.6087 0.4887 19 6 0.2116 -7.9334 0.5412 20 1 -0.2920 -7.9945 1.4946 21 6 -0.4885 -8.1838 -0.6309 22 7 -0.0208 -7.7500 -1.7823 23 14 -2.0945 -9.1362 -0.5744 24 1 -2.3992 -9.5097 0.8302 25 1 -3.1907 -8.2904 -1.1113 26 1 -1.9698 -10.3661 -1.3971 27 6 2.1566 -6.8823 1.5613 28 6 2.0985 -5.3377 1.4593 29 1 -0.3633 0.0007 1.0276 30 1 -0.3633 0.8896 -0.5146 31 1 -0.3633 -0.8904 -0.5132 32 1 5.6558 1.0058 0.0021 33 1 3.8017 3.0829 -1.2491 34 1 5.5809 3.1458 -1.2479 35 1 4.7365 1.8565 -2.1380 36 1 3.7999 3.0836 1.2494 37 1 4.7333 1.8576 2.1405 38 1 5.5784 3.1471 1.2505 39 1 3.7459 -3.2718 0.0023 40 1 4.0467 -6.2146 0.1470 41 1 4.0688 -5.1304 -1.2761 42 1 3.3107 -7.0617 -2.2969 43 1 1.7671 -6.3539 -1.8019 44 1 1.8179 -8.6946 -1.3275 45 1 3.2967 -8.4843 -0.3509 46 1 -0.5099 -7.9253 -2.6014 47 1 1.6756 -7.1795 2.4931 48 1 3.2047 -7.1772 1.6137 49 1 1.1111 -4.9923 1.7656 50 1 2.8528 -4.9036 2.1155 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052778708.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:13:04 Heat of formation + Delta-G solvation = -19.682461 kcal Electronic energy + Delta-G solvation = -30039.997999 eV Core-core repulsion = 26068.523864 eV Total energy + Delta-G solvation = -3971.474135 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -44.61039 -41.04289 -39.32567 -36.95723 -36.56878 -36.02203 -34.07289 -33.32479 -32.29380 -31.55727 -29.03499 -28.10653 -27.86355 -25.86343 -25.50745 -24.57096 -22.97716 -22.11668 -21.54582 -21.36482 -20.80834 -19.17810 -18.60545 -18.11444 -17.33670 -17.17022 -16.93074 -16.19763 -15.89434 -15.71207 -15.53905 -15.39639 -15.11574 -15.00158 -14.36840 -14.28525 -14.09308 -14.05978 -13.93073 -13.51645 -13.38859 -13.22451 -13.16220 -13.08368 -12.73168 -12.72212 -12.36281 -12.32396 -12.22552 -12.13547 -12.00185 -11.95649 -11.82164 -11.79637 -11.60483 -11.21591 -11.15034 -11.12901 -10.45431 -10.24438 -9.84855 -8.63765 -7.81980 -5.21752 -0.34821 1.19354 1.24596 1.44997 1.48381 1.57006 1.92478 2.08227 2.54917 2.74354 3.31300 3.54651 3.56060 3.62131 3.91795 3.99456 4.02769 4.03039 4.14617 4.30341 4.34203 4.41702 4.46315 4.59251 4.62356 4.69553 4.72387 4.79390 4.79405 4.85141 4.87967 4.90218 4.90386 5.02643 5.06724 5.16366 5.18151 5.24781 5.28394 5.31207 5.36290 5.38381 5.49038 5.58806 5.68698 5.77387 6.19680 6.27362 6.43948 6.51449 7.00359 7.20444 7.93838 8.41567 9.22291 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.019251 B = 0.002758 C = 0.002589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.116574 B =10148.830432 C =10812.645173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.073 3.927 3 N -0.499 5.499 4 C 0.232 3.768 5 C -0.001 4.001 6 C -0.141 4.141 7 C -0.141 4.141 8 O -0.187 6.187 9 C -0.135 4.135 10 C 0.600 3.400 11 O -0.548 6.548 12 N -0.700 5.700 13 C 0.167 3.833 14 H 0.050 0.950 15 C -0.107 4.107 16 C -0.123 4.123 17 C 0.166 3.834 18 N -0.602 5.602 19 C -0.258 4.258 20 H 0.058 0.942 21 C -0.044 4.044 22 N -0.915 5.915 23 Si 0.954 3.046 24 H -0.273 1.273 25 H -0.300 1.300 26 H -0.288 1.288 27 C 0.157 3.843 28 C -0.142 4.142 29 H 0.088 0.912 30 H 0.093 0.907 31 H 0.076 0.924 32 H 0.124 0.876 33 H 0.057 0.943 34 H 0.103 0.897 35 H 0.053 0.947 36 H 0.057 0.943 37 H 0.054 0.946 38 H 0.103 0.897 39 H 0.413 0.587 40 H 0.087 0.913 41 H 0.082 0.918 42 H 0.046 0.954 43 H 0.060 0.940 44 H 0.057 0.943 45 H 0.034 0.966 46 H 0.245 0.755 47 H 0.029 0.971 48 H 0.060 0.940 49 H 0.022 0.978 50 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.907 19.407 3.154 25.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.050 4.050 3 N -0.228 5.228 4 C 0.027 3.973 5 C -0.020 4.020 6 C -0.199 4.199 7 C -0.198 4.198 8 O -0.075 6.075 9 C -0.190 4.190 10 C 0.385 3.615 11 O -0.428 6.428 12 N -0.351 5.351 13 C 0.063 3.937 14 H 0.068 0.932 15 C -0.145 4.145 16 C -0.162 4.162 17 C 0.043 3.957 18 N -0.324 5.324 19 C -0.389 4.389 20 H 0.076 0.924 21 C -0.240 4.240 22 N -0.561 5.561 23 Si 0.784 3.216 24 H -0.198 1.198 25 H -0.228 1.228 26 H -0.214 1.214 27 C 0.028 3.972 28 C -0.184 4.184 29 H 0.106 0.894 30 H 0.112 0.888 31 H 0.095 0.905 32 H 0.142 0.858 33 H 0.076 0.924 34 H 0.122 0.878 35 H 0.073 0.927 36 H 0.076 0.924 37 H 0.074 0.926 38 H 0.122 0.878 39 H 0.250 0.750 40 H 0.105 0.895 41 H 0.101 0.899 42 H 0.065 0.935 43 H 0.078 0.922 44 H 0.075 0.925 45 H 0.052 0.948 46 H 0.055 0.945 47 H 0.048 0.952 48 H 0.078 0.922 49 H 0.041 0.959 50 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 14.869 19.705 3.012 24.869 hybrid contribution -1.047 -1.212 -0.257 1.622 sum 13.822 18.493 2.755 23.252 Atomic orbital electron populations 1.20373 0.84858 1.04217 1.04104 1.22340 0.99002 0.86737 0.96966 1.70304 1.00977 1.30571 1.20997 1.27665 0.96552 0.79012 0.94117 1.20174 0.89305 0.92925 0.99608 1.21863 1.04249 0.99300 0.94456 1.21859 1.04249 0.99279 0.94437 1.84429 1.28811 1.24409 1.69811 1.22707 0.82085 0.95710 1.18489 1.16592 0.85777 0.82150 0.76946 1.90896 1.17424 1.82395 1.52039 1.46206 1.09690 1.06170 1.73009 1.21028 0.97933 0.77640 0.97054 0.93177 1.21315 0.96334 0.96975 0.99829 1.20744 0.99834 0.97611 0.98017 1.20133 0.91602 0.95691 0.88246 1.44449 1.06214 1.61032 1.20725 1.19392 0.87223 1.40317 0.91923 0.92398 1.25505 1.00397 1.02076 0.96004 1.70137 1.40633 1.47477 0.97839 0.85406 0.80402 0.78356 0.77435 1.19791 1.22803 1.21449 1.20485 0.96904 0.88925 0.90859 1.23201 0.99711 1.00027 0.95417 0.89361 0.88787 0.90521 0.85752 0.92358 0.87809 0.92742 0.92370 0.92645 0.87826 0.75012 0.89503 0.89928 0.93491 0.92171 0.92503 0.94794 0.94529 0.95243 0.92176 0.95871 0.90289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.17 9.87 71.24 0.70 -1.47 16 2 C 0.07 2.21 7.16 41.83 0.30 2.50 16 3 N -0.50 -13.19 11.26 -291.06 -3.28 -16.47 16 4 C 0.23 5.10 6.82 88.29 0.60 5.71 16 5 C 0.00 -0.01 3.39 -11.54 -0.04 -0.05 16 6 C -0.14 -1.41 9.18 71.98 0.66 -0.75 16 7 C -0.14 -1.37 9.18 71.98 0.66 -0.71 16 8 O -0.19 -4.76 10.57 -7.14 -0.08 -4.84 16 9 C -0.14 -4.20 7.18 24.05 0.17 -4.03 16 10 C 0.60 21.83 7.75 86.46 0.67 22.50 16 11 O -0.55 -24.57 14.44 -4.29 -0.06 -24.63 16 12 N -0.70 -22.42 4.95 -447.63 -2.22 -24.64 16 13 C 0.17 6.35 2.24 44.75 0.10 6.45 16 14 H 0.05 2.55 6.22 -2.39 -0.01 2.53 16 15 C -0.11 -3.49 5.35 29.56 0.16 -3.33 16 16 C -0.12 -5.08 5.02 28.35 0.14 -4.94 16 17 C 0.17 7.53 5.24 83.58 0.44 7.97 16 18 N -0.60 -29.35 2.60 -707.83 -1.84 -31.20 16 19 C -0.26 -14.33 9.63 84.03 0.81 -13.52 16 20 H 0.06 3.25 7.89 -2.91 -0.02 3.23 16 21 C -0.04 -2.46 4.91 84.86 0.42 -2.05 16 22 N -0.91 -52.79 9.43 21.65 0.20 -52.59 16 23 Si 0.95 46.21 29.60 68.60 2.03 48.24 16 24 H -0.27 -12.81 7.11 99.48 0.71 -12.10 16 25 H -0.30 -14.88 7.11 99.48 0.71 -14.17 16 26 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 27 C 0.16 6.35 5.18 87.60 0.45 6.81 16 28 C -0.14 -5.42 6.00 31.88 0.19 -5.23 16 29 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 30 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 31 H 0.08 2.47 6.47 -2.39 -0.02 2.46 16 32 H 0.12 0.94 8.14 -2.38 -0.02 0.92 16 33 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.10 0.45 8.14 -2.39 -0.02 0.43 16 35 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 36 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 37 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 38 H 0.10 0.42 8.14 -2.39 -0.02 0.41 16 39 H 0.41 10.20 8.30 -92.71 -0.77 9.43 16 40 H 0.09 2.52 6.27 -2.39 -0.01 2.50 16 41 H 0.08 2.25 7.87 -2.39 -0.02 2.23 16 42 H 0.05 1.75 8.14 -2.38 -0.02 1.73 16 43 H 0.06 3.08 5.29 -2.39 -0.01 3.07 16 44 H 0.06 2.96 6.05 -2.39 -0.01 2.95 16 45 H 0.03 1.34 8.12 -2.39 -0.02 1.32 16 46 H 0.25 13.94 8.31 -92.71 -0.77 13.17 16 47 H 0.03 1.21 7.99 -2.39 -0.02 1.19 16 48 H 0.06 2.07 6.87 -2.39 -0.02 2.05 16 49 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 50 H 0.08 2.48 8.12 -2.39 -0.02 2.46 16 Total: -1.00 -70.77 391.58 1.38 -69.39 By element: Atomic # 1 Polarization: 20.69 SS G_CDS: 0.18 Total: 20.86 kcal Atomic # 6 Polarization: 9.42 SS G_CDS: 6.44 Total: 15.86 kcal Atomic # 7 Polarization: -117.76 SS G_CDS: -7.13 Total: -124.89 kcal Atomic # 8 Polarization: -29.33 SS G_CDS: -0.14 Total: -29.47 kcal Atomic # 14 Polarization: 46.21 SS G_CDS: 2.03 Total: 48.24 kcal Total: -70.77 1.38 -69.39 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052778708.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.704 kcal (2) G-P(sol) polarization free energy of solvation -70.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds