Wall clock time and date at job start Tue Mar 31 2020 18:55:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50703 * 110.88456 * 2 1 4 4 O 1.21276 * 119.99906 * 243.47697 * 3 2 1 5 5 N 1.34776 * 119.99572 * 63.48257 * 3 2 1 6 6 C 1.46936 * 120.71675 * 4.81170 * 5 3 2 7 7 C 1.52752 * 109.13432 * 234.29690 * 6 5 3 8 8 C 1.53177 * 109.34791 * 304.83034 * 7 6 5 9 9 C 1.52070 * 109.73737 * 59.80837 * 8 7 6 10 10 C 1.54369 * 110.59289 * 177.71872 * 9 8 7 11 11 C 1.54461 * 102.86877 * 276.45368 * 10 9 8 12 12 N 1.47088 * 107.30007 * 338.53255 * 11 10 9 13 13 C 1.36939 * 125.62403 * 178.99262 * 12 11 10 14 14 H 1.08007 * 119.99816 * 179.97438 * 13 12 11 15 15 C 1.38810 * 120.00044 * 359.97438 * 13 12 11 16 16 N 1.31616 * 120.00211 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 119.99731 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.47151 * 89.99938 * 17 15 13 19 19 H 1.48503 * 109.47082 * 209.99881 * 17 15 13 20 20 H 1.48499 * 109.47405 * 329.99805 * 17 15 13 21 21 C 1.47576 * 108.74792 * 359.01592 * 12 11 10 22 22 C 1.47104 * 120.70871 * 185.09464 * 5 3 2 23 23 C 1.54477 * 110.97213 * 123.81401 * 2 1 3 24 24 N 1.46763 * 105.47389 * 92.70172 * 23 2 1 25 25 C 1.34424 * 111.30101 * 17.28074 * 24 23 2 26 26 O 1.21273 * 124.94424 * 179.30840 * 25 24 23 27 27 C 1.51293 * 110.11099 * 359.17328 * 25 24 23 28 28 H 1.09006 * 109.46818 * 290.61372 * 1 2 3 29 29 H 1.08996 * 109.47485 * 50.60699 * 1 2 3 30 30 H 1.09001 * 109.47499 * 170.61523 * 1 2 3 31 31 H 1.09002 * 109.56243 * 354.17326 * 6 5 3 32 32 H 1.09005 * 109.56500 * 114.51738 * 6 5 3 33 33 H 1.09007 * 109.56941 * 184.80230 * 7 6 5 34 34 H 1.09003 * 109.36576 * 64.72942 * 7 6 5 35 35 H 1.08994 * 109.42610 * 299.72860 * 8 7 6 36 36 H 1.09001 * 109.38013 * 179.86307 * 8 7 6 37 37 H 1.08997 * 110.73490 * 34.79987 * 10 9 8 38 38 H 1.08994 * 110.72980 * 158.11180 * 10 9 8 39 39 H 1.08998 * 109.87928 * 97.95750 * 11 10 9 40 40 H 1.09000 * 109.87831 * 218.95764 * 11 10 9 41 41 H 0.97005 * 119.99932 * 180.02562 * 16 15 13 42 42 H 1.09003 * 110.37449 * 264.45542 * 21 12 11 43 43 H 1.08997 * 110.37568 * 142.10685 * 21 12 11 44 44 H 1.08995 * 109.56487 * 247.60134 * 22 5 3 45 45 H 1.08996 * 109.56263 * 7.83243 * 22 5 3 46 46 H 1.09001 * 110.24159 * 333.70169 * 23 2 1 47 47 H 1.08997 * 110.31768 * 211.73965 * 23 2 1 48 48 H 0.96998 * 124.35471 * 197.01926 * 24 23 2 49 49 H 1.08998 * 110.63812 * 225.35163 * 27 25 24 50 50 H 1.08995 * 110.38418 * 102.80721 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0672 1.4080 0.0000 4 8 2.7216 1.8073 -0.9397 5 7 1.8205 2.2233 1.0444 6 6 1.1206 1.7252 2.2365 7 6 -0.0860 2.6184 2.5185 8 6 0.3775 4.0732 2.6423 9 6 1.0440 4.5117 1.3478 10 6 1.4682 5.9937 1.4305 11 6 0.1700 6.7443 1.0603 12 7 -0.6819 5.8040 0.3164 13 6 -1.9311 6.0764 -0.1743 14 1 -2.4786 5.3150 -0.7100 15 6 -2.4935 7.3309 0.0169 16 7 -1.8265 8.2586 0.6701 17 14 -4.1972 7.7026 -0.6531 18 1 -5.2170 7.3630 0.3716 19 1 -4.2934 9.1461 -0.9879 20 1 -4.4356 6.8940 -1.8756 21 6 0.0313 4.5186 0.1864 22 6 2.2408 3.6327 1.0129 23 6 2.0829 -0.8027 1.1984 24 7 2.2853 -2.1668 0.6961 25 6 2.3012 -2.1950 -0.6477 26 8 2.4638 -3.1913 -1.3197 27 6 2.0833 -0.8033 -1.1998 28 1 -0.3633 0.3618 0.9619 29 1 -0.3634 0.6522 -0.7941 30 1 -0.3634 -1.0139 -0.1676 31 1 0.7837 0.7034 2.0616 32 1 1.7956 1.7473 3.0921 33 1 -0.5611 2.3073 3.4490 34 1 -0.7991 2.5322 1.6986 35 1 1.0892 4.1582 3.4634 36 1 -0.4835 4.7114 2.8412 37 1 1.7863 6.2482 2.4415 38 1 2.2575 6.2098 0.7106 39 1 -0.3409 7.0701 1.9663 40 1 0.4056 7.6071 0.4372 41 1 -2.2198 9.1352 0.8040 42 1 0.5508 4.4679 -0.7705 43 1 -0.6655 3.6863 0.2855 44 1 3.0296 3.7949 1.7474 45 1 2.6113 3.8809 0.0184 46 1 1.3617 -0.8048 2.0158 47 1 3.0300 -0.3795 1.5328 48 1 2.3973 -2.9472 1.2612 49 1 1.3582 -0.8220 -2.0135 50 1 3.0272 -0.3781 -1.5409 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054169541.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:46 Heat of formation + Delta-G solvation = -59.235826 kcal Electronic energy + Delta-G solvation = -31270.724504 eV Core-core repulsion = 27297.535207 eV Total energy + Delta-G solvation = -3973.189298 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.42066 -41.01166 -39.70637 -37.66141 -37.28511 -34.86051 -33.70590 -33.06182 -31.93502 -30.30944 -29.32963 -27.59390 -27.36444 -26.79000 -25.35929 -23.50043 -22.91652 -21.91797 -21.68427 -20.23590 -19.29732 -18.86388 -18.28535 -17.81851 -17.19377 -16.88503 -16.58935 -16.32583 -16.12564 -15.91906 -15.66246 -15.40524 -14.96327 -14.76823 -14.58373 -14.40033 -14.34183 -14.06478 -13.88163 -13.56519 -13.37934 -13.31558 -13.14302 -13.11531 -12.75425 -12.73268 -12.36142 -12.32980 -12.15965 -12.09019 -12.02019 -11.91738 -11.65985 -11.50368 -11.23912 -11.10845 -11.09780 -10.69300 -10.66796 -10.16005 -9.55043 -8.87054 -7.84491 -5.18852 1.44152 1.45872 1.45976 1.52758 1.54431 1.94103 2.34996 2.49028 3.06857 3.19101 3.33426 3.54241 3.62582 3.67009 3.74574 3.90221 3.96804 4.00705 4.14186 4.21095 4.36586 4.47814 4.49600 4.54651 4.60082 4.65552 4.68284 4.73151 4.77804 4.81650 4.83737 4.84782 4.90551 4.96249 5.02049 5.08773 5.20877 5.24211 5.32188 5.44639 5.54351 5.56335 5.61439 5.71417 5.74790 5.81032 5.94990 6.20970 6.43865 7.11739 7.11993 7.19011 7.79610 8.44497 9.25663 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.018385 B = 0.003168 C = 0.002975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.602692 B = 8837.302644 C = 9410.791523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.087 4.087 3 C 0.529 3.471 4 O -0.579 6.579 5 N -0.597 5.597 6 C 0.091 3.909 7 C -0.134 4.134 8 C -0.094 4.094 9 C -0.070 4.070 10 C -0.123 4.123 11 C 0.189 3.811 12 N -0.623 5.623 13 C -0.239 4.239 14 H 0.076 0.924 15 C -0.064 4.064 16 N -0.949 5.949 17 Si 0.974 3.026 18 H -0.282 1.282 19 H -0.296 1.296 20 H -0.273 1.273 21 C 0.152 3.848 22 C 0.137 3.863 23 C 0.113 3.887 24 N -0.711 5.711 25 C 0.524 3.476 26 O -0.580 6.580 27 C -0.139 4.139 28 H 0.097 0.903 29 H 0.051 0.949 30 H 0.083 0.917 31 H 0.118 0.882 32 H 0.106 0.894 33 H 0.103 0.897 34 H 0.051 0.949 35 H 0.087 0.913 36 H 0.038 0.962 37 H 0.091 0.909 38 H 0.062 0.938 39 H 0.015 0.985 40 H -0.005 1.005 41 H 0.246 0.754 42 H -0.009 1.009 43 H 0.042 0.958 44 H 0.097 0.903 45 H 0.064 0.936 46 H 0.135 0.865 47 H 0.091 0.909 48 H 0.425 0.575 49 H 0.105 0.895 50 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.237 -19.094 10.742 23.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.090 4.090 3 C 0.317 3.683 4 O -0.458 6.458 5 N -0.328 5.328 6 C -0.030 4.030 7 C -0.172 4.172 8 C -0.131 4.131 9 C -0.072 4.072 10 C -0.162 4.162 11 C 0.064 3.936 12 N -0.349 5.349 13 C -0.369 4.369 14 H 0.094 0.906 15 C -0.257 4.257 16 N -0.599 5.599 17 Si 0.803 3.197 18 H -0.209 1.209 19 H -0.222 1.222 20 H -0.198 1.198 21 C 0.027 3.973 22 C 0.014 3.986 23 C -0.011 4.011 24 N -0.367 5.367 25 C 0.310 3.690 26 O -0.461 6.461 27 C -0.180 4.180 28 H 0.115 0.885 29 H 0.070 0.930 30 H 0.102 0.898 31 H 0.135 0.865 32 H 0.124 0.876 33 H 0.122 0.878 34 H 0.069 0.931 35 H 0.106 0.894 36 H 0.057 0.943 37 H 0.109 0.891 38 H 0.081 0.919 39 H 0.033 0.967 40 H 0.014 0.986 41 H 0.055 0.945 42 H 0.009 0.991 43 H 0.060 0.940 44 H 0.115 0.885 45 H 0.083 0.917 46 H 0.152 0.848 47 H 0.109 0.891 48 H 0.266 0.734 49 H 0.124 0.876 50 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 8.509 -19.134 9.851 23.142 hybrid contribution -1.028 0.985 -0.856 1.661 sum 7.481 -18.149 8.995 21.593 Atomic orbital electron populations 1.22045 0.89547 1.03904 1.04511 1.21594 0.98871 0.91214 0.97364 1.20422 0.79073 0.87430 0.81407 1.90704 1.41581 1.77018 1.36528 1.48119 1.57105 1.10008 1.17544 1.22447 0.94163 0.99207 0.87204 1.21921 0.97870 0.94222 1.03192 1.21194 0.99963 0.96751 0.95210 1.21307 0.95007 0.94524 0.96337 1.22720 0.96994 0.94414 1.02046 1.20876 0.88514 0.90544 0.93682 1.44797 1.15370 1.10005 1.64688 1.19384 0.91876 0.97058 1.28550 0.90618 1.25577 1.02297 0.96193 1.01621 1.70185 1.38341 1.04229 1.47114 0.85143 0.79823 0.76623 0.78145 1.20871 1.22231 1.19827 1.21557 0.93135 0.87981 0.94607 1.21330 0.95302 0.79297 1.02641 1.22614 1.03265 0.80152 0.95093 1.46109 1.72832 1.11216 1.06548 1.20901 0.74349 0.90135 0.83572 1.90739 1.52432 1.38776 1.64106 1.22316 1.04888 0.92089 0.98689 0.88489 0.92967 0.89812 0.86458 0.87563 0.87820 0.93059 0.89432 0.94278 0.89099 0.91886 0.96676 0.98632 0.94491 0.99084 0.93968 0.88496 0.91725 0.84773 0.89073 0.73393 0.87646 0.87644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.92 8.23 71.98 0.59 -1.33 16 2 C -0.09 -1.33 0.60 -51.87 -0.03 -1.36 16 3 C 0.53 11.88 6.43 87.66 0.56 12.44 16 4 O -0.58 -18.61 15.04 -3.02 -0.05 -18.65 16 5 N -0.60 -11.43 2.88 -821.14 -2.37 -13.80 16 6 C 0.09 0.96 4.99 86.21 0.43 1.39 16 7 C -0.13 -2.24 5.71 30.57 0.17 -2.06 16 8 C -0.09 -2.28 4.64 30.35 0.14 -2.14 16 9 C -0.07 -2.08 0.54 -51.91 -0.03 -2.11 16 10 C -0.12 -4.22 5.89 31.56 0.19 -4.04 16 11 C 0.19 9.22 5.03 86.76 0.44 9.66 16 12 N -0.62 -31.84 3.39 -692.78 -2.35 -34.19 16 13 C -0.24 -13.52 10.28 84.03 0.86 -12.65 16 14 H 0.08 4.14 7.83 -2.91 -0.02 4.11 16 15 C -0.06 -3.65 5.49 84.86 0.47 -3.19 16 16 N -0.95 -57.22 10.31 21.65 0.22 -56.99 16 17 Si 0.97 46.01 29.55 68.60 2.03 48.03 16 18 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 19 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 20 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 21 C 0.15 6.16 5.97 86.54 0.52 6.68 16 22 C 0.14 3.33 5.10 86.01 0.44 3.77 16 23 C 0.11 0.86 5.53 86.83 0.48 1.34 16 24 N -0.71 -7.97 6.24 -459.80 -2.87 -10.84 16 25 C 0.52 10.74 8.44 87.90 0.74 11.48 16 26 O -0.58 -17.24 18.03 -3.01 -0.05 -17.29 16 27 C -0.14 -2.78 5.70 30.59 0.17 -2.60 16 28 H 0.10 0.91 5.24 -2.38 -0.01 0.90 16 29 H 0.05 0.97 8.13 -2.39 -0.02 0.95 16 30 H 0.08 0.94 8.11 -2.39 -0.02 0.92 16 31 H 0.12 0.62 2.24 -2.39 -0.01 0.61 16 32 H 0.11 0.56 8.14 -2.38 -0.02 0.54 16 33 H 0.10 1.18 8.14 -2.38 -0.02 1.16 16 34 H 0.05 1.12 6.17 -2.39 -0.01 1.11 16 35 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.04 1.29 7.85 -2.39 -0.02 1.27 16 37 H 0.09 2.61 8.01 -2.39 -0.02 2.59 16 38 H 0.06 2.10 8.00 -2.39 -0.02 2.08 16 39 H 0.02 0.81 7.38 -2.39 -0.02 0.80 16 40 H 0.00 -0.26 7.50 -2.39 -0.02 -0.28 16 41 H 0.25 14.43 8.31 -92.70 -0.77 13.66 16 42 H -0.01 -0.39 7.87 -2.39 -0.02 -0.41 16 43 H 0.04 1.66 6.13 -2.39 -0.01 1.64 16 44 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 45 H 0.06 1.98 6.87 -2.39 -0.02 1.96 16 46 H 0.13 0.04 6.19 -2.39 -0.01 0.03 16 47 H 0.09 0.61 7.88 -2.39 -0.02 0.59 16 48 H 0.42 2.99 8.96 -92.71 -0.83 2.15 16 49 H 0.11 2.15 7.91 -2.39 -0.02 2.13 16 50 H 0.11 2.47 7.08 -2.39 -0.02 2.45 16 Total: -1.00 -82.18 371.55 0.84 -81.34 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: 0.14 Total: 7.12 kcal Atomic # 6 Polarization: 9.13 SS G_CDS: 6.14 Total: 15.27 kcal Atomic # 7 Polarization: -108.46 SS G_CDS: -7.36 Total: -115.82 kcal Atomic # 8 Polarization: -35.85 SS G_CDS: -0.10 Total: -35.95 kcal Atomic # 14 Polarization: 46.01 SS G_CDS: 2.03 Total: 48.03 kcal Total: -82.18 0.84 -81.34 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054169541.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.103 kcal (2) G-P(sol) polarization free energy of solvation -82.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds