Wall clock time and date at job start Tue Mar 31 2020 18:55:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50701 * 110.85758 * 2 1 4 4 O 1.21281 * 120.00054 * 123.39366 * 3 2 1 5 5 N 1.34771 * 120.00255 * 303.39847 * 3 2 1 6 6 C 1.46940 * 120.72132 * 174.19157 * 5 3 2 7 7 C 1.53182 * 108.94946 * 125.72343 * 6 5 3 8 8 C 1.53195 * 109.27379 * 55.31063 * 7 6 5 9 9 C 1.52068 * 109.67741 * 300.04705 * 8 7 6 10 10 C 1.54334 * 110.64279 * 182.55346 * 9 8 7 11 11 C 1.54472 * 102.86322 * 152.72971 * 10 9 8 12 12 N 1.47356 * 107.34002 * 338.55826 * 11 10 9 13 13 C 1.36936 * 125.77564 * 178.94492 * 12 11 10 14 14 H 1.07998 * 119.99856 * 180.02562 * 13 12 11 15 15 C 1.38813 * 120.00081 * 0.03296 * 13 12 11 16 16 N 1.31625 * 119.99882 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00045 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.46769 * 90.00258 * 17 15 13 19 19 H 1.48495 * 109.47053 * 210.00219 * 17 15 13 20 20 H 1.48495 * 109.47084 * 330.00238 * 17 15 13 21 21 C 1.47578 * 108.59286 * 358.97163 * 12 11 10 22 22 C 1.47109 * 120.71312 * 354.16465 * 5 3 2 23 23 C 1.54474 * 110.96997 * 236.21183 * 2 1 3 24 24 N 1.46862 * 105.42676 * 216.44548 * 23 2 1 25 25 C 1.34426 * 111.30885 * 17.01236 * 24 23 2 26 26 O 1.21274 * 124.93705 * 179.62654 * 25 24 23 27 27 C 1.51280 * 110.11334 * 359.59453 * 25 24 23 28 28 H 1.08999 * 109.46983 * 66.16693 * 1 2 3 29 29 H 1.08998 * 109.46988 * 186.17412 * 1 2 3 30 30 H 1.09005 * 109.46867 * 306.17531 * 1 2 3 31 31 H 1.08997 * 109.55791 * 245.56839 * 6 5 3 32 32 H 1.09002 * 109.55044 * 5.77665 * 6 5 3 33 33 H 1.08998 * 109.50220 * 175.25392 * 7 6 5 34 34 H 1.09007 * 109.50262 * 295.33110 * 7 6 5 35 35 H 1.08998 * 109.43420 * 179.97438 * 8 7 6 36 36 H 1.08996 * 109.43380 * 60.11122 * 8 7 6 37 37 H 1.08998 * 110.73783 * 271.07851 * 10 9 8 38 38 H 1.08998 * 110.73517 * 34.38950 * 10 9 8 39 39 H 1.09005 * 109.87163 * 97.97049 * 11 10 9 40 40 H 1.08998 * 109.87665 * 219.11113 * 11 10 9 41 41 H 0.97003 * 119.99857 * 179.97438 * 16 15 13 42 42 H 1.08993 * 110.37839 * 264.44551 * 21 12 11 43 43 H 1.09002 * 110.36985 * 142.20681 * 21 12 11 44 44 H 1.09009 * 109.57449 * 112.47236 * 22 5 3 45 45 H 1.08995 * 109.57750 * 352.08403 * 22 5 3 46 46 H 1.09006 * 110.24444 * 335.42842 * 23 2 1 47 47 H 1.08993 * 110.24958 * 97.42866 * 23 2 1 48 48 H 0.96994 * 124.33981 * 197.02572 * 24 23 2 49 49 H 1.09000 * 110.48229 * 225.06007 * 27 25 24 50 50 H 1.09000 * 110.59768 * 102.47933 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0666 1.4082 0.0000 4 8 2.8227 1.7691 0.8769 5 7 1.7062 2.2667 -0.9744 6 6 2.1165 3.6767 -0.9221 7 6 2.8321 4.0353 -2.2282 8 6 1.9184 3.7050 -3.4126 9 6 1.5876 2.2208 -3.4058 10 6 0.7192 1.8513 -4.6270 11 6 1.0686 0.3648 -4.8603 12 7 2.3737 0.1152 -4.2233 13 6 3.0293 -1.0865 -4.1855 14 1 3.9860 -1.1642 -3.6905 15 6 2.4642 -2.2045 -4.7835 16 7 1.2985 -2.1095 -5.3873 17 14 3.3582 -3.8439 -4.7312 18 1 2.9475 -4.5931 -3.5168 19 1 3.0140 -4.6341 -5.9404 20 1 4.8238 -3.6075 -4.6950 21 6 2.8574 1.3775 -3.6313 22 6 0.8940 1.8122 -2.1136 23 6 2.0829 -0.8022 -1.1988 24 7 3.2861 -1.4773 -0.6955 25 6 3.3092 -1.4970 0.6484 26 8 4.1856 -1.9977 1.3207 27 6 2.0834 -0.8030 1.2000 28 1 -0.3633 0.4152 -0.9400 29 1 -0.3633 -1.0217 0.1105 30 1 -0.3633 0.6066 0.8296 31 1 1.2364 4.3086 -0.8028 32 1 2.7919 3.8291 -0.0803 33 1 3.0658 5.0999 -2.2346 34 1 3.7544 3.4598 -2.3077 35 1 2.4249 3.9597 -4.3435 36 1 0.9973 4.2823 -3.3321 37 1 -0.3399 1.9673 -4.3967 38 1 0.9950 2.4530 -5.4929 39 1 0.3077 -0.2703 -4.4064 40 1 1.1333 0.1627 -5.9294 41 1 0.9039 -2.8907 -5.8055 42 1 3.5330 1.8852 -4.3197 43 1 3.3582 1.1842 -2.6826 44 1 -0.0921 2.2744 -2.0666 45 1 0.7931 0.7275 -2.0805 46 1 1.3494 -1.5366 -1.5317 47 1 2.3414 -0.1290 -2.0161 48 1 3.9756 -1.8598 -1.2604 49 1 2.3587 -0.1321 2.0137 50 1 1.3499 -1.5336 1.5409 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054169542.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:51 Heat of formation + Delta-G solvation = -31.751466 kcal Electronic energy + Delta-G solvation = -33068.362608 eV Core-core repulsion = 29096.365122 eV Total energy + Delta-G solvation = -3971.997486 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.33187 -39.52619 -38.30463 -36.30119 -35.66735 -33.34131 -32.89192 -31.82283 -30.16473 -28.80616 -27.99252 -26.15311 -25.77728 -25.61137 -24.04524 -22.58352 -21.37239 -20.30194 -20.12773 -19.12455 -18.30386 -17.16855 -16.82452 -16.66874 -15.94689 -15.45318 -15.07255 -14.90515 -14.62046 -14.61166 -14.15914 -14.06273 -13.70118 -13.51364 -13.23235 -13.00430 -12.72501 -12.68893 -12.51765 -12.38611 -12.16493 -11.97242 -11.94654 -11.78373 -11.36199 -11.22497 -11.09037 -10.97407 -10.94395 -10.84359 -10.59589 -10.26266 -10.18925 -10.01091 -9.85192 -9.74000 -9.56288 -9.46144 -8.74272 -8.60489 -8.48845 -6.98389 -5.87344 -3.21467 2.68153 2.98367 3.02680 3.29597 3.36805 3.38852 3.81792 4.35037 4.36657 4.47038 4.59915 4.77563 4.89237 4.96371 5.02611 5.08605 5.23855 5.24943 5.36333 5.39992 5.50987 5.55640 5.61551 5.68065 5.71842 5.74074 5.79492 5.85844 5.90279 5.93250 5.99956 6.05714 6.08810 6.14391 6.24031 6.24980 6.32486 6.44793 6.48361 6.56135 6.65754 6.72187 7.18603 7.39813 7.46228 7.46526 7.48524 7.67408 8.08279 8.24762 8.64171 9.05732 9.65690 10.31551 11.23345 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.009458 B = 0.007352 C = 0.004819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2959.807596 B = 3807.437922 C = 5808.515628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.103 4.103 3 C 0.536 3.464 4 O -0.541 6.541 5 N -0.604 5.604 6 C 0.112 3.888 7 C -0.135 4.135 8 C -0.101 4.101 9 C -0.090 4.090 10 C -0.135 4.135 11 C 0.175 3.825 12 N -0.603 5.603 13 C -0.230 4.230 14 H 0.074 0.926 15 C 0.002 3.998 16 N -0.914 5.914 17 Si 0.897 3.103 18 H -0.286 1.286 19 H -0.290 1.290 20 H -0.281 1.281 21 C 0.143 3.857 22 C 0.112 3.888 23 C 0.097 3.903 24 N -0.717 5.717 25 C 0.521 3.479 26 O -0.548 6.548 27 C -0.137 4.137 28 H 0.077 0.923 29 H 0.074 0.926 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.088 0.912 33 H 0.071 0.929 34 H 0.069 0.931 35 H 0.066 0.934 36 H 0.061 0.939 37 H 0.062 0.938 38 H 0.062 0.938 39 H 0.048 0.952 40 H 0.043 0.957 41 H 0.253 0.747 42 H 0.020 0.980 43 H 0.038 0.962 44 H 0.066 0.934 45 H 0.110 0.890 46 H 0.086 0.914 47 H 0.132 0.868 48 H 0.413 0.587 49 H 0.112 0.888 50 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.330 10.727 5.204 13.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.107 4.107 3 C 0.324 3.676 4 O -0.418 6.418 5 N -0.336 5.336 6 C -0.010 4.010 7 C -0.173 4.173 8 C -0.139 4.139 9 C -0.092 4.092 10 C -0.173 4.173 11 C 0.051 3.949 12 N -0.330 5.330 13 C -0.358 4.358 14 H 0.092 0.908 15 C -0.195 4.195 16 N -0.561 5.561 17 Si 0.727 3.273 18 H -0.213 1.213 19 H -0.216 1.216 20 H -0.206 1.206 21 C 0.017 3.983 22 C -0.010 4.010 23 C -0.027 4.027 24 N -0.371 5.371 25 C 0.307 3.693 26 O -0.427 6.427 27 C -0.177 4.177 28 H 0.096 0.904 29 H 0.093 0.907 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.107 0.893 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.085 0.915 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.066 0.934 40 H 0.062 0.938 41 H 0.064 0.936 42 H 0.038 0.962 43 H 0.056 0.944 44 H 0.084 0.916 45 H 0.127 0.873 46 H 0.104 0.896 47 H 0.150 0.850 48 H 0.253 0.747 49 H 0.131 0.869 50 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -5.598 10.480 6.000 13.310 hybrid contribution 0.675 -1.055 -0.632 1.403 sum -4.923 9.424 5.367 11.911 Atomic orbital electron populations 1.22036 0.90832 1.03637 1.03515 1.21774 0.98087 0.92759 0.98098 1.20150 0.80037 0.86433 0.81000 1.90664 1.35351 1.78022 1.37767 1.48021 1.53191 1.09558 1.22852 1.21563 0.99456 0.81065 0.98934 1.21945 0.99533 1.01257 0.94587 1.21338 0.99249 0.95116 0.98177 1.21425 0.98085 0.94888 0.94762 1.22855 0.98174 1.00398 0.95921 1.21260 0.87522 0.88281 0.97884 1.44663 1.19985 1.04202 1.64191 1.18874 1.01424 0.84458 1.31078 0.90831 1.24705 0.97068 0.97705 1.00048 1.69934 1.16955 1.28747 1.40459 0.86348 0.79190 0.84270 0.77448 1.21333 1.21572 1.20622 1.21521 0.93112 0.87643 0.96040 1.22028 0.92879 1.02190 0.83926 1.22862 0.87373 0.97161 0.95306 1.46227 1.24856 1.58944 1.07114 1.20761 0.87063 0.78644 0.82860 1.90697 1.40600 1.48349 1.63048 1.22340 0.96978 0.99978 0.98450 0.90400 0.90736 0.91669 0.91685 0.89313 0.91070 0.91242 0.91504 0.92027 0.91922 0.91953 0.93361 0.93844 0.93629 0.96208 0.94370 0.91589 0.87254 0.89587 0.85003 0.74735 0.86942 0.87429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 8.11 37.16 0.30 -1.27 16 2 C -0.10 -1.48 0.60 -154.03 -0.09 -1.57 16 3 C 0.54 8.40 6.51 -10.99 -0.07 8.33 16 4 O -0.54 -10.07 14.95 5.56 0.08 -9.98 16 5 N -0.60 -8.17 2.58 -173.19 -0.45 -8.61 16 6 C 0.11 1.33 6.42 -3.71 -0.02 1.30 16 7 C -0.14 -1.51 5.92 -26.54 -0.16 -1.67 16 8 C -0.10 -1.15 4.64 -27.10 -0.13 -1.28 16 9 C -0.09 -1.25 0.55 -154.10 -0.08 -1.33 16 10 C -0.13 -2.00 5.90 -25.26 -0.15 -2.15 16 11 C 0.18 3.50 5.11 -2.80 -0.01 3.49 16 12 N -0.60 -12.62 2.54 -170.10 -0.43 -13.06 16 13 C -0.23 -5.43 8.67 -15.06 -0.13 -5.56 16 14 H 0.07 1.74 7.83 -52.49 -0.41 1.33 16 15 C 0.00 0.05 5.49 -17.43 -0.10 -0.05 16 16 N -0.91 -23.60 10.33 55.49 0.57 -23.02 16 17 Si 0.90 20.42 29.55 -169.99 -5.02 15.40 16 18 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 19 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 20 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 21 C 0.14 2.53 4.42 -2.88 -0.01 2.51 16 22 C 0.11 1.46 2.93 -4.10 -0.01 1.45 16 23 C 0.10 1.61 4.96 -3.07 -0.02 1.59 16 24 N -0.72 -12.88 6.24 -59.14 -0.37 -13.25 16 25 C 0.52 9.70 8.43 -10.86 -0.09 9.61 16 26 O -0.55 -12.06 18.03 5.56 0.10 -11.96 16 27 C -0.14 -2.05 5.76 -26.75 -0.15 -2.21 16 28 H 0.08 0.84 5.11 -51.93 -0.27 0.57 16 29 H 0.07 0.74 8.00 -51.93 -0.42 0.32 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.09 1.16 7.00 -51.93 -0.36 0.80 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.07 0.91 7.38 -51.92 -0.38 0.53 16 35 H 0.07 0.78 8.10 -51.93 -0.42 0.35 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.06 0.81 8.00 -51.93 -0.42 0.39 16 38 H 0.06 0.90 8.00 -51.93 -0.42 0.49 16 39 H 0.05 1.05 7.39 -51.93 -0.38 0.67 16 40 H 0.04 1.02 7.51 -51.93 -0.39 0.63 16 41 H 0.25 6.53 8.31 -40.82 -0.34 6.19 16 42 H 0.02 0.38 7.98 -51.93 -0.41 -0.04 16 43 H 0.04 0.72 6.32 -51.93 -0.33 0.39 16 44 H 0.07 0.73 8.07 -51.92 -0.42 0.31 16 45 H 0.11 1.58 2.98 -51.93 -0.15 1.43 16 46 H 0.09 1.47 7.89 -51.93 -0.41 1.06 16 47 H 0.13 2.33 1.35 -51.93 -0.07 2.26 16 48 H 0.41 7.57 8.96 -40.82 -0.37 7.21 16 49 H 0.11 1.76 7.00 -51.93 -0.36 1.40 16 50 H 0.11 1.32 7.80 -51.93 -0.40 0.91 16 LS Contribution 363.53 15.07 5.48 5.48 Total: -1.00 -29.70 363.53 -8.59 -38.29 By element: Atomic # 1 Polarization: 17.14 SS G_CDS: -7.62 Total: 9.52 kcal Atomic # 6 Polarization: 12.13 SS G_CDS: -0.93 Total: 11.20 kcal Atomic # 7 Polarization: -57.27 SS G_CDS: -0.68 Total: -57.94 kcal Atomic # 8 Polarization: -22.13 SS G_CDS: 0.18 Total: -21.94 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -29.70 -8.59 -38.29 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054169542.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.537 kcal (2) G-P(sol) polarization free energy of solvation -29.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds