Wall clock time and date at job start Tue Mar 31 2020 18:55:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50701 * 110.85758 * 2 1 4 4 O 1.21281 * 120.00054 * 123.39366 * 3 2 1 5 5 N 1.34771 * 120.00255 * 303.39847 * 3 2 1 6 6 C 1.46940 * 120.72132 * 174.19157 * 5 3 2 7 7 C 1.53182 * 108.94946 * 125.72343 * 6 5 3 8 8 C 1.53195 * 109.27379 * 55.31063 * 7 6 5 9 9 C 1.52068 * 109.67741 * 300.04705 * 8 7 6 10 10 C 1.54334 * 110.64279 * 182.55346 * 9 8 7 11 11 C 1.54472 * 102.86322 * 152.72971 * 10 9 8 12 12 N 1.47356 * 107.34002 * 338.55826 * 11 10 9 13 13 C 1.36936 * 125.77564 * 178.94492 * 12 11 10 14 14 H 1.07998 * 119.99856 * 180.02562 * 13 12 11 15 15 C 1.38813 * 120.00081 * 0.03296 * 13 12 11 16 16 N 1.31625 * 119.99882 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00045 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.46769 * 90.00258 * 17 15 13 19 19 H 1.48495 * 109.47053 * 210.00219 * 17 15 13 20 20 H 1.48495 * 109.47084 * 330.00238 * 17 15 13 21 21 C 1.47578 * 108.59286 * 358.97163 * 12 11 10 22 22 C 1.47109 * 120.71312 * 354.16465 * 5 3 2 23 23 C 1.54474 * 110.96997 * 236.21183 * 2 1 3 24 24 N 1.46862 * 105.42676 * 216.44548 * 23 2 1 25 25 C 1.34426 * 111.30885 * 17.01236 * 24 23 2 26 26 O 1.21274 * 124.93705 * 179.62654 * 25 24 23 27 27 C 1.51280 * 110.11334 * 359.59453 * 25 24 23 28 28 H 1.08999 * 109.46983 * 66.16693 * 1 2 3 29 29 H 1.08998 * 109.46988 * 186.17412 * 1 2 3 30 30 H 1.09005 * 109.46867 * 306.17531 * 1 2 3 31 31 H 1.08997 * 109.55791 * 245.56839 * 6 5 3 32 32 H 1.09002 * 109.55044 * 5.77665 * 6 5 3 33 33 H 1.08998 * 109.50220 * 175.25392 * 7 6 5 34 34 H 1.09007 * 109.50262 * 295.33110 * 7 6 5 35 35 H 1.08998 * 109.43420 * 179.97438 * 8 7 6 36 36 H 1.08996 * 109.43380 * 60.11122 * 8 7 6 37 37 H 1.08998 * 110.73783 * 271.07851 * 10 9 8 38 38 H 1.08998 * 110.73517 * 34.38950 * 10 9 8 39 39 H 1.09005 * 109.87163 * 97.97049 * 11 10 9 40 40 H 1.08998 * 109.87665 * 219.11113 * 11 10 9 41 41 H 0.97003 * 119.99857 * 179.97438 * 16 15 13 42 42 H 1.08993 * 110.37839 * 264.44551 * 21 12 11 43 43 H 1.09002 * 110.36985 * 142.20681 * 21 12 11 44 44 H 1.09009 * 109.57449 * 112.47236 * 22 5 3 45 45 H 1.08995 * 109.57750 * 352.08403 * 22 5 3 46 46 H 1.09006 * 110.24444 * 335.42842 * 23 2 1 47 47 H 1.08993 * 110.24958 * 97.42866 * 23 2 1 48 48 H 0.96994 * 124.33981 * 197.02572 * 24 23 2 49 49 H 1.09000 * 110.48229 * 225.06007 * 27 25 24 50 50 H 1.09000 * 110.59768 * 102.47933 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0666 1.4082 0.0000 4 8 2.8227 1.7691 0.8769 5 7 1.7062 2.2667 -0.9744 6 6 2.1165 3.6767 -0.9221 7 6 2.8321 4.0353 -2.2282 8 6 1.9184 3.7050 -3.4126 9 6 1.5876 2.2208 -3.4058 10 6 0.7192 1.8513 -4.6270 11 6 1.0686 0.3648 -4.8603 12 7 2.3737 0.1152 -4.2233 13 6 3.0293 -1.0865 -4.1855 14 1 3.9860 -1.1642 -3.6905 15 6 2.4642 -2.2045 -4.7835 16 7 1.2985 -2.1095 -5.3873 17 14 3.3582 -3.8439 -4.7312 18 1 2.9475 -4.5931 -3.5168 19 1 3.0140 -4.6341 -5.9404 20 1 4.8238 -3.6075 -4.6950 21 6 2.8574 1.3775 -3.6313 22 6 0.8940 1.8122 -2.1136 23 6 2.0829 -0.8022 -1.1988 24 7 3.2861 -1.4773 -0.6955 25 6 3.3092 -1.4970 0.6484 26 8 4.1856 -1.9977 1.3207 27 6 2.0834 -0.8030 1.2000 28 1 -0.3633 0.4152 -0.9400 29 1 -0.3633 -1.0217 0.1105 30 1 -0.3633 0.6066 0.8296 31 1 1.2364 4.3086 -0.8028 32 1 2.7919 3.8291 -0.0803 33 1 3.0658 5.0999 -2.2346 34 1 3.7544 3.4598 -2.3077 35 1 2.4249 3.9597 -4.3435 36 1 0.9973 4.2823 -3.3321 37 1 -0.3399 1.9673 -4.3967 38 1 0.9950 2.4530 -5.4929 39 1 0.3077 -0.2703 -4.4064 40 1 1.1333 0.1627 -5.9294 41 1 0.9039 -2.8907 -5.8055 42 1 3.5330 1.8852 -4.3197 43 1 3.3582 1.1842 -2.6826 44 1 -0.0921 2.2744 -2.0666 45 1 0.7931 0.7275 -2.0805 46 1 1.3494 -1.5366 -1.5317 47 1 2.3414 -0.1290 -2.0161 48 1 3.9756 -1.8598 -1.2604 49 1 2.3587 -0.1321 2.0137 50 1 1.3499 -1.5336 1.5409 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054169542.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:50 Heat of formation + Delta-G solvation = -51.472998 kcal Electronic energy + Delta-G solvation = -33069.217798 eV Core-core repulsion = 29096.365122 eV Total energy + Delta-G solvation = -3972.852676 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.55381 -40.84199 -39.65656 -37.70156 -37.03892 -34.71493 -34.28093 -33.04698 -31.68575 -30.15764 -29.21574 -27.48290 -27.11928 -26.77653 -25.45240 -23.73156 -22.61485 -21.76070 -21.53975 -20.33158 -19.44439 -18.80869 -18.25245 -17.92594 -17.20557 -16.81117 -16.64289 -16.15864 -16.00467 -15.95891 -15.67561 -15.34518 -14.89162 -14.77918 -14.47148 -14.24102 -13.99219 -13.92499 -13.72092 -13.61089 -13.39451 -13.25407 -13.19457 -12.98579 -12.85467 -12.76373 -12.56781 -12.39318 -12.10086 -12.03876 -11.92980 -11.77174 -11.70661 -11.47243 -11.20191 -11.03517 -10.95679 -10.74528 -10.59212 -10.05648 -9.58288 -8.77997 -7.79371 -5.10746 1.42624 1.45290 1.48484 1.50496 1.54016 1.95795 2.40292 2.49167 3.19373 3.31448 3.36293 3.41187 3.63133 3.79241 3.85439 3.88156 4.00043 4.11347 4.17327 4.25074 4.41260 4.49788 4.55808 4.60862 4.71131 4.71787 4.77392 4.80310 4.81955 4.84479 4.88671 4.94193 4.96377 5.02026 5.10391 5.18497 5.23914 5.25120 5.27579 5.44612 5.50168 5.53663 5.61340 5.74506 5.83777 5.92238 6.01583 6.27461 6.35011 7.08321 7.14673 7.19370 7.84644 8.49122 9.29572 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.009458 B = 0.007352 C = 0.004819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2959.807596 B = 3807.437922 C = 5808.515628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.094 4.094 3 C 0.530 3.470 4 O -0.577 6.577 5 N -0.597 5.597 6 C 0.108 3.892 7 C -0.130 4.130 8 C -0.095 4.095 9 C -0.078 4.078 10 C -0.119 4.119 11 C 0.182 3.818 12 N -0.613 5.613 13 C -0.216 4.216 14 H 0.066 0.934 15 C -0.039 4.039 16 N -0.933 5.933 17 Si 0.938 3.062 18 H -0.289 1.289 19 H -0.299 1.299 20 H -0.282 1.282 21 C 0.144 3.856 22 C 0.110 3.890 23 C 0.098 3.902 24 N -0.721 5.721 25 C 0.511 3.489 26 O -0.590 6.590 27 C -0.129 4.129 28 H 0.084 0.916 29 H 0.087 0.913 30 H 0.084 0.916 31 H 0.099 0.901 32 H 0.072 0.928 33 H 0.099 0.901 34 H 0.040 0.960 35 H 0.067 0.933 36 H 0.094 0.906 37 H 0.095 0.905 38 H 0.070 0.930 39 H 0.028 0.972 40 H 0.002 0.998 41 H 0.245 0.755 42 H 0.010 0.990 43 H 0.024 0.976 44 H 0.105 0.895 45 H 0.094 0.906 46 H 0.080 0.920 47 H 0.122 0.878 48 H 0.406 0.594 49 H 0.108 0.892 50 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.590 13.325 5.700 16.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.098 4.098 3 C 0.318 3.682 4 O -0.458 6.458 5 N -0.328 5.328 6 C -0.013 4.013 7 C -0.168 4.168 8 C -0.133 4.133 9 C -0.079 4.079 10 C -0.157 4.157 11 C 0.057 3.943 12 N -0.339 5.339 13 C -0.345 4.345 14 H 0.084 0.916 15 C -0.234 4.234 16 N -0.582 5.582 17 Si 0.770 3.230 18 H -0.216 1.216 19 H -0.226 1.226 20 H -0.207 1.207 21 C 0.019 3.981 22 C -0.011 4.011 23 C -0.026 4.026 24 N -0.373 5.373 25 C 0.299 3.701 26 O -0.472 6.472 27 C -0.169 4.169 28 H 0.103 0.897 29 H 0.106 0.894 30 H 0.102 0.898 31 H 0.117 0.883 32 H 0.090 0.910 33 H 0.117 0.883 34 H 0.058 0.942 35 H 0.085 0.915 36 H 0.113 0.887 37 H 0.113 0.887 38 H 0.089 0.911 39 H 0.046 0.954 40 H 0.020 0.980 41 H 0.055 0.945 42 H 0.028 0.972 43 H 0.042 0.958 44 H 0.123 0.877 45 H 0.112 0.888 46 H 0.098 0.902 47 H 0.140 0.860 48 H 0.244 0.756 49 H 0.126 0.874 50 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -7.876 13.125 6.468 16.617 hybrid contribution 1.482 -1.830 -0.841 2.501 sum -6.394 11.295 5.626 14.146 Atomic orbital electron populations 1.22083 0.87765 1.05103 1.04693 1.21786 1.00342 0.91566 0.96059 1.20376 0.79686 0.87047 0.81097 1.90654 1.36942 1.78758 1.39402 1.48077 1.52487 1.10109 1.22125 1.21759 1.00628 0.80326 0.98590 1.21914 0.98140 1.02547 0.94192 1.21330 1.00761 0.92995 0.98210 1.21369 0.95483 0.96141 0.94953 1.22731 1.00199 0.96173 0.96639 1.21068 0.86460 0.91831 0.94942 1.44815 1.20395 1.04484 1.64247 1.18956 1.00867 0.85579 1.29148 0.91564 1.25101 0.97801 0.99460 1.01045 1.70078 1.17848 1.28488 1.41803 0.85689 0.78373 0.82331 0.76654 1.21579 1.22586 1.20729 1.21582 0.95036 0.86856 0.94601 1.22119 0.94263 1.01774 0.82980 1.22872 0.86560 0.96920 0.96227 1.46401 1.25126 1.58613 1.07190 1.21441 0.87685 0.78152 0.82839 1.90660 1.42416 1.50269 1.63863 1.22365 0.95817 1.00288 0.98405 0.89719 0.89417 0.89752 0.88314 0.90961 0.88254 0.94153 0.91459 0.88733 0.88703 0.91086 0.95382 0.97980 0.94521 0.97226 0.95832 0.87748 0.88820 0.90195 0.86007 0.75600 0.87399 0.84260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.61 8.11 71.98 0.58 -2.02 16 2 C -0.09 -2.53 0.60 -51.87 -0.03 -2.56 16 3 C 0.53 15.77 6.51 87.66 0.57 16.35 16 4 O -0.58 -21.17 14.95 -3.03 -0.05 -21.21 16 5 N -0.60 -14.46 2.58 -820.25 -2.12 -16.58 16 6 C 0.11 2.19 6.42 86.36 0.55 2.75 16 7 C -0.13 -2.47 5.92 30.72 0.18 -2.29 16 8 C -0.10 -1.75 4.64 30.35 0.14 -1.61 16 9 C -0.08 -1.93 0.55 -51.92 -0.03 -1.95 16 10 C -0.12 -3.16 5.90 31.55 0.19 -2.97 16 11 C 0.18 7.20 5.11 86.72 0.44 7.64 16 12 N -0.61 -25.77 2.54 -692.07 -1.76 -27.53 16 13 C -0.22 -10.40 8.67 84.03 0.73 -9.67 16 14 H 0.07 3.23 7.83 -2.91 -0.02 3.21 16 15 C -0.04 -1.99 5.49 84.86 0.47 -1.53 16 16 N -0.93 -49.32 10.33 21.65 0.22 -49.10 16 17 Si 0.94 43.03 29.55 68.60 2.03 45.06 16 18 H -0.29 -13.20 7.11 99.48 0.71 -12.50 16 19 H -0.30 -14.10 7.11 99.48 0.71 -13.39 16 20 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 21 C 0.14 5.02 4.42 86.54 0.38 5.40 16 22 C 0.11 2.47 2.93 86.01 0.25 2.72 16 23 C 0.10 3.22 4.96 86.81 0.43 3.65 16 24 N -0.72 -26.53 6.24 -459.61 -2.87 -29.40 16 25 C 0.51 19.33 8.43 87.90 0.74 20.07 16 26 O -0.59 -26.73 18.03 -3.01 -0.05 -26.78 16 27 C -0.13 -3.72 5.76 30.58 0.18 -3.54 16 28 H 0.08 1.50 5.11 -2.39 -0.01 1.49 16 29 H 0.09 1.44 8.00 -2.39 -0.02 1.42 16 30 H 0.08 1.30 8.14 -2.38 -0.02 1.28 16 31 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.07 1.75 7.00 -2.39 -0.02 1.73 16 33 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.04 1.00 7.38 -2.38 -0.02 0.99 16 35 H 0.07 1.29 8.10 -2.39 -0.02 1.27 16 36 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.09 1.98 8.00 -2.39 -0.02 1.96 16 38 H 0.07 1.81 8.00 -2.39 -0.02 1.79 16 39 H 0.03 1.22 7.39 -2.38 -0.02 1.20 16 40 H 0.00 0.09 7.51 -2.39 -0.02 0.07 16 41 H 0.24 12.97 8.31 -92.71 -0.77 12.20 16 42 H 0.01 0.37 7.98 -2.39 -0.02 0.35 16 43 H 0.02 0.89 6.32 -2.39 -0.02 0.88 16 44 H 0.10 1.66 8.07 -2.38 -0.02 1.64 16 45 H 0.09 2.47 2.98 -2.39 -0.01 2.46 16 46 H 0.08 2.72 7.89 -2.38 -0.02 2.70 16 47 H 0.12 4.29 1.35 -2.39 0.00 4.29 16 48 H 0.41 15.59 8.96 -92.71 -0.83 14.75 16 49 H 0.11 3.29 7.00 -2.39 -0.02 3.28 16 50 H 0.14 3.09 7.80 -2.39 -0.02 3.07 16 Total: -1.00 -68.43 363.53 1.32 -67.10 By element: Atomic # 1 Polarization: 27.88 SS G_CDS: 0.14 Total: 28.02 kcal Atomic # 6 Polarization: 24.66 SS G_CDS: 5.78 Total: 30.43 kcal Atomic # 7 Polarization: -116.09 SS G_CDS: -6.52 Total: -122.61 kcal Atomic # 8 Polarization: -47.90 SS G_CDS: -0.10 Total: -48.00 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.06 kcal Total: -68.43 1.32 -67.10 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054169542.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.628 kcal (2) G-P(sol) polarization free energy of solvation -68.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds