Wall clock time and date at job start Tue Mar 31 2020 20:12:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.33686 * 126.27517 * 2 1 4 4 C 1.30617 * 109.00008 * 180.02562 * 3 2 1 5 5 C 1.50697 * 125.42522 * 180.02562 * 4 3 2 6 6 C 1.52999 * 109.47551 * 299.97744 * 5 4 3 7 7 C 1.53009 * 109.46773 * 59.97955 * 5 4 3 8 8 O 1.33669 * 109.15166 * 0.02562 * 4 3 2 9 9 C 1.35339 * 107.68082 * 359.97438 * 8 4 3 10 10 C 1.46732 * 126.63921 * 180.26351 * 9 8 4 11 11 O 1.21687 * 119.99705 * 179.68502 * 10 9 8 12 12 N 1.34773 * 119.99671 * 359.68566 * 10 9 8 13 13 C 1.46503 * 119.99716 * 179.97438 * 12 10 9 14 14 H 1.09004 * 109.49927 * 324.94356 * 13 12 10 15 15 C 1.53040 * 109.49963 * 204.83739 * 13 12 10 16 16 C 1.53040 * 109.53971 * 178.68283 * 15 13 12 17 17 C 1.53197 * 109.30986 * 61.36470 * 16 15 13 18 18 H 1.09000 * 109.57925 * 65.15481 * 17 16 15 19 19 C 1.53001 * 109.58654 * 185.57825 * 17 16 15 20 20 N 1.46921 * 108.77843 * 305.36825 * 17 16 15 21 21 C 1.36941 * 120.63073 * 233.62856 * 20 17 16 22 22 H 1.08004 * 119.99816 * 29.00556 * 21 20 17 23 23 C 1.38801 * 120.00345 * 209.00418 * 21 20 17 24 24 N 1.31629 * 119.99795 * 15.01855 * 23 21 20 25 25 Si 1.86800 * 120.00445 * 195.01857 * 23 21 20 26 26 H 1.48499 * 109.47052 * 90.00290 * 25 23 21 27 27 H 1.48496 * 109.47413 * 210.00222 * 25 23 21 28 28 H 1.48501 * 109.47086 * 330.00161 * 25 23 21 29 29 C 1.46927 * 118.74071 * 53.60459 * 20 17 16 30 30 H 1.09002 * 109.46817 * 269.96902 * 1 2 3 31 31 H 1.08998 * 109.47538 * 29.97035 * 1 2 3 32 32 H 1.09009 * 109.47230 * 149.97367 * 1 2 3 33 33 H 1.09005 * 109.47130 * 179.97438 * 5 4 3 34 34 H 1.09005 * 109.46720 * 60.00076 * 6 5 4 35 35 H 1.08994 * 109.47133 * 179.97438 * 6 5 4 36 36 H 1.09000 * 109.46830 * 300.00395 * 6 5 4 37 37 H 1.08998 * 109.47193 * 60.00296 * 7 5 4 38 38 H 1.09003 * 109.46668 * 179.97438 * 7 5 4 39 39 H 1.08991 * 109.46974 * 299.99457 * 7 5 4 40 40 H 0.96998 * 120.00601 * 0.02562 * 12 10 9 41 41 H 1.08993 * 109.46090 * 298.70493 * 15 13 12 42 42 H 1.09000 * 109.45742 * 58.66500 * 15 13 12 43 43 H 1.09008 * 109.49744 * 301.42126 * 16 15 13 44 44 H 1.08993 * 109.52412 * 181.33650 * 16 15 13 45 45 H 1.08990 * 109.47167 * 179.29684 * 19 17 16 46 46 H 1.09005 * 109.46783 * 299.29119 * 19 17 16 47 47 H 1.09000 * 109.47279 * 59.28973 * 19 17 16 48 48 H 0.97003 * 119.99491 * 179.97438 * 24 23 21 49 49 H 1.08996 * 109.58491 * 186.60343 * 29 20 17 50 50 H 1.08997 * 109.58111 * 66.18196 * 29 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2979 1.0778 0.0000 4 6 3.5452 0.6899 -0.0006 5 6 4.7439 1.6031 -0.0002 6 6 4.7127 2.4864 -1.2491 7 6 4.7125 2.4854 1.2495 8 8 3.5889 -0.6461 -0.0015 9 6 2.3136 -1.0991 -0.0009 10 6 1.8826 -2.5017 0.0038 11 8 0.6966 -2.7737 0.0096 12 7 2.8004 -3.4887 0.0018 13 6 2.3701 -4.8891 0.0071 14 1 1.4620 -4.9884 0.6018 15 6 3.4743 -5.7605 0.6100 16 6 3.0128 -7.2192 0.6462 17 6 2.7428 -7.7007 -0.7829 18 1 3.6749 -7.7092 -1.3478 19 6 2.1494 -9.1105 -0.7456 20 7 1.7894 -6.7817 -1.4194 21 6 0.6396 -7.2560 -1.9924 22 1 0.1793 -8.1567 -1.6138 23 6 0.0656 -6.5791 -3.0596 24 7 0.7585 -5.6690 -3.7110 25 14 -1.6902 -6.9595 -3.5715 26 1 -2.6246 -6.0751 -2.8300 27 1 -1.8418 -6.7276 -5.0304 28 1 -1.9999 -8.3783 -3.2611 29 6 2.0928 -5.3442 -1.4291 30 1 -0.3633 -0.0006 1.0277 31 1 -0.3634 0.8902 -0.5133 32 1 -0.3634 -0.8898 -0.5143 33 1 5.6557 1.0057 -0.0004 34 1 3.8009 3.0837 -1.2488 35 1 5.5795 3.1472 -1.2485 36 1 4.7350 1.8578 -2.1393 37 1 4.7349 1.8561 2.1392 38 1 5.5798 3.1456 1.2500 39 1 3.8008 3.0827 1.2497 40 1 3.7458 -3.2719 -0.0024 41 1 4.3743 -5.6794 0.0005 42 1 3.6907 -5.4229 1.6235 43 1 2.0987 -7.2971 1.2350 44 1 3.7899 -7.8361 1.0972 45 1 1.9464 -9.4463 -1.7624 46 1 2.8582 -9.7906 -0.2731 47 1 1.2210 -9.0990 -0.1746 48 1 0.3574 -5.1963 -4.4571 49 1 1.2413 -4.7937 -1.8290 50 1 2.9719 -5.1605 -2.0468 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071883808.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:12:49 Heat of formation + Delta-G solvation = -10.218210 kcal Electronic energy + Delta-G solvation = -30026.320760 eV Core-core repulsion = 26055.257026 eV Total energy + Delta-G solvation = -3971.063734 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -43.46146 -39.44779 -37.63999 -36.12089 -35.31411 -34.36580 -32.82928 -31.24323 -30.56604 -29.84786 -27.82556 -27.55828 -25.99918 -25.05101 -24.18725 -22.35975 -21.95394 -20.75136 -20.59337 -20.16441 -19.34111 -17.85241 -16.95140 -16.47342 -16.33190 -15.69107 -15.16081 -14.76046 -14.54800 -14.28592 -14.03126 -13.80297 -13.65808 -13.44889 -13.37191 -13.18850 -13.06479 -12.75813 -12.54623 -12.40923 -12.32080 -12.00104 -11.88134 -11.67091 -11.48134 -11.42883 -11.13423 -10.96010 -10.88730 -10.78939 -10.71884 -10.56019 -10.41041 -10.26760 -9.98566 -9.89450 -9.53878 -9.49115 -8.87170 -8.54954 -8.41865 -6.62226 -5.73529 -3.18511 0.88120 2.34715 2.39775 3.30411 3.40576 3.44146 3.49966 3.50924 3.78127 4.46426 4.54098 4.64114 4.64672 4.80821 4.97140 5.26974 5.29328 5.32201 5.35656 5.39954 5.45946 5.48163 5.55038 5.57680 5.60667 5.66363 5.73393 5.83229 5.86345 5.93571 5.94313 6.01045 6.08506 6.25423 6.27554 6.37443 6.37960 6.43626 6.46937 6.61236 6.70188 6.83844 7.03476 7.11821 7.28184 7.52288 7.72669 7.80251 7.87384 8.38765 8.50540 9.24496 9.88743 10.43697 11.34478 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.013904 B = 0.003185 C = 0.002820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2013.359668 B = 8790.404225 C = 9927.013283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.074 3.926 3 N -0.482 5.482 4 C 0.214 3.786 5 C 0.002 3.998 6 C -0.145 4.145 7 C -0.143 4.143 8 O -0.189 6.189 9 C -0.108 4.108 10 C 0.604 3.396 11 O -0.504 6.504 12 N -0.706 5.706 13 C 0.115 3.885 14 H 0.086 0.914 15 C -0.116 4.116 16 C -0.126 4.126 17 C 0.164 3.836 18 H 0.025 0.975 19 C -0.136 4.136 20 N -0.583 5.583 21 C -0.253 4.253 22 H 0.071 0.929 23 C 0.006 3.994 24 N -0.901 5.901 25 Si 0.901 3.099 26 H -0.286 1.286 27 H -0.292 1.292 28 H -0.279 1.279 29 C 0.167 3.833 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.098 0.902 33 H 0.099 0.901 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.061 0.939 37 H 0.059 0.941 38 H 0.072 0.928 39 H 0.070 0.930 40 H 0.396 0.604 41 H 0.059 0.941 42 H 0.051 0.949 43 H 0.061 0.939 44 H 0.055 0.945 45 H 0.061 0.939 46 H 0.038 0.962 47 H 0.053 0.947 48 H 0.253 0.747 49 H 0.097 0.903 50 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.370 12.787 9.776 19.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.050 4.050 3 N -0.212 5.212 4 C 0.008 3.992 5 C -0.018 4.018 6 C -0.202 4.202 7 C -0.201 4.201 8 O -0.075 6.075 9 C -0.163 4.163 10 C 0.388 3.612 11 O -0.381 6.381 12 N -0.356 5.356 13 C 0.011 3.989 14 H 0.104 0.896 15 C -0.155 4.155 16 C -0.165 4.165 17 C 0.058 3.942 18 H 0.043 0.957 19 C -0.194 4.194 20 N -0.306 5.306 21 C -0.382 4.382 22 H 0.089 0.911 23 C -0.193 4.193 24 N -0.545 5.545 25 Si 0.731 3.269 26 H -0.213 1.213 27 H -0.218 1.218 28 H -0.204 1.204 29 C 0.040 3.960 30 H 0.098 0.902 31 H 0.093 0.907 32 H 0.117 0.883 33 H 0.118 0.882 34 H 0.089 0.911 35 H 0.091 0.909 36 H 0.080 0.920 37 H 0.078 0.922 38 H 0.091 0.909 39 H 0.089 0.911 40 H 0.230 0.770 41 H 0.078 0.922 42 H 0.070 0.930 43 H 0.080 0.920 44 H 0.074 0.926 45 H 0.080 0.920 46 H 0.057 0.943 47 H 0.072 0.928 48 H 0.063 0.937 49 H 0.115 0.885 50 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges 9.315 13.203 9.614 18.802 hybrid contribution -0.061 -0.652 -0.379 0.757 sum 9.254 12.550 9.235 18.123 Atomic orbital electron populations 1.20385 0.85299 1.04520 1.03515 1.22032 0.98321 0.86352 0.98263 1.70229 1.00263 1.31123 1.19573 1.26473 0.95636 0.79293 0.97782 1.19729 0.90473 0.93121 0.98448 1.21852 1.03428 0.99398 0.95544 1.21845 1.03445 0.99376 0.95433 1.84436 1.30049 1.23605 1.69458 1.23199 0.80982 0.96687 1.15389 1.16293 0.86116 0.81057 0.77764 1.90902 1.15556 1.81415 1.50180 1.46006 1.09036 1.06928 1.73611 1.22129 0.97454 0.76917 1.02434 0.89625 1.21681 0.98030 0.96252 0.99499 1.22050 1.00414 0.94278 0.99803 1.20499 0.92677 0.90324 0.90711 0.95716 1.21799 0.99860 0.95648 1.02075 1.44025 1.20866 1.00256 1.65480 1.19158 0.99462 1.10429 1.09193 0.91108 1.25083 0.98732 0.99654 0.95835 1.70002 1.35175 1.28029 1.21283 0.86310 0.85183 0.78015 0.77379 1.21277 1.21831 1.20448 1.21102 1.00801 0.85319 0.88741 0.90221 0.90696 0.88315 0.88235 0.91070 0.90869 0.92019 0.92208 0.90877 0.91073 0.77010 0.92193 0.93004 0.91991 0.92585 0.91960 0.94332 0.92771 0.93715 0.88526 0.96453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.14 9.87 36.00 0.36 -0.79 16 2 C 0.07 1.18 7.16 -82.47 -0.59 0.59 16 3 N -0.48 -7.01 11.26 -7.07 -0.08 -7.08 16 4 C 0.21 2.73 6.82 -12.80 -0.09 2.65 16 5 C 0.00 0.01 3.39 -91.77 -0.31 -0.30 16 6 C -0.14 -1.07 9.18 37.16 0.34 -0.73 16 7 C -0.14 -0.99 9.18 37.16 0.34 -0.64 16 8 O -0.19 -2.73 10.57 4.42 0.05 -2.68 16 9 C -0.11 -1.78 7.18 -36.84 -0.26 -2.05 16 10 C 0.60 11.29 7.75 -12.83 -0.10 11.19 16 11 O -0.50 -10.99 14.46 5.20 0.08 -10.92 16 12 N -0.71 -12.17 5.08 -54.98 -0.28 -12.45 16 13 C 0.12 2.25 2.60 -67.81 -0.18 2.07 16 14 H 0.09 1.86 7.58 -51.93 -0.39 1.47 16 15 C -0.12 -1.88 5.35 -26.69 -0.14 -2.02 16 16 C -0.13 -2.11 5.37 -26.61 -0.14 -2.26 16 17 C 0.16 3.34 3.50 -67.60 -0.24 3.10 16 18 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 19 C -0.14 -2.54 7.94 37.16 0.30 -2.24 16 20 N -0.58 -14.43 2.99 -164.78 -0.49 -14.92 16 21 C -0.25 -6.88 8.60 -15.06 -0.13 -7.01 16 22 H 0.07 1.88 6.21 -52.48 -0.33 1.55 16 23 C 0.01 0.17 4.96 -17.43 -0.09 0.08 16 24 N -0.90 -26.67 11.14 55.49 0.62 -26.05 16 25 Si 0.90 22.33 29.58 -169.99 -5.03 17.30 16 26 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 27 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 28 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 29 C 0.17 4.05 4.86 -3.71 -0.02 4.03 16 30 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 31 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.10 1.60 6.48 -51.92 -0.34 1.27 16 33 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 38 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.40 5.74 8.40 -40.82 -0.34 5.40 16 41 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 42 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.06 1.08 8.14 -51.92 -0.42 0.66 16 44 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 45 H 0.06 1.25 7.62 -51.93 -0.40 0.86 16 46 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 47 H 0.05 1.02 7.44 -51.93 -0.39 0.64 16 48 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 49 H 0.10 2.75 6.06 -51.93 -0.31 2.44 16 50 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 398.48 15.07 6.01 6.01 Total: -1.00 -32.27 398.48 -8.48 -40.75 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: -8.39 Total: 4.37 kcal Atomic # 6 Polarization: 6.63 SS G_CDS: -0.95 Total: 5.68 kcal Atomic # 7 Polarization: -60.27 SS G_CDS: -0.23 Total: -60.51 kcal Atomic # 8 Polarization: -13.72 SS G_CDS: 0.12 Total: -13.60 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.03 Total: 17.30 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -32.27 -8.48 -40.75 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071883808.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.533 kcal (2) G-P(sol) polarization free energy of solvation -32.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds