Wall clock time and date at job start Tue Mar 31 2020 20:12:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.33686 * 126.27517 * 2 1 4 4 C 1.30617 * 109.00008 * 180.02562 * 3 2 1 5 5 C 1.50697 * 125.42522 * 180.02562 * 4 3 2 6 6 C 1.52999 * 109.47551 * 299.97744 * 5 4 3 7 7 C 1.53009 * 109.46773 * 59.97955 * 5 4 3 8 8 O 1.33669 * 109.15166 * 0.02562 * 4 3 2 9 9 C 1.35339 * 107.68082 * 359.97438 * 8 4 3 10 10 C 1.46732 * 126.63921 * 180.26351 * 9 8 4 11 11 O 1.21687 * 119.99705 * 179.68502 * 10 9 8 12 12 N 1.34773 * 119.99671 * 359.68566 * 10 9 8 13 13 C 1.46503 * 119.99716 * 179.97438 * 12 10 9 14 14 H 1.09004 * 109.49927 * 324.94356 * 13 12 10 15 15 C 1.53040 * 109.49963 * 204.83739 * 13 12 10 16 16 C 1.53040 * 109.53971 * 178.68283 * 15 13 12 17 17 C 1.53197 * 109.30986 * 61.36470 * 16 15 13 18 18 H 1.09000 * 109.57925 * 65.15481 * 17 16 15 19 19 C 1.53001 * 109.58654 * 185.57825 * 17 16 15 20 20 N 1.46921 * 108.77843 * 305.36825 * 17 16 15 21 21 C 1.36941 * 120.63073 * 233.62856 * 20 17 16 22 22 H 1.08004 * 119.99816 * 29.00556 * 21 20 17 23 23 C 1.38801 * 120.00345 * 209.00418 * 21 20 17 24 24 N 1.31629 * 119.99795 * 15.01855 * 23 21 20 25 25 Si 1.86800 * 120.00445 * 195.01857 * 23 21 20 26 26 H 1.48499 * 109.47052 * 90.00290 * 25 23 21 27 27 H 1.48496 * 109.47413 * 210.00222 * 25 23 21 28 28 H 1.48501 * 109.47086 * 330.00161 * 25 23 21 29 29 C 1.46927 * 118.74071 * 53.60459 * 20 17 16 30 30 H 1.09002 * 109.46817 * 269.96902 * 1 2 3 31 31 H 1.08998 * 109.47538 * 29.97035 * 1 2 3 32 32 H 1.09009 * 109.47230 * 149.97367 * 1 2 3 33 33 H 1.09005 * 109.47130 * 179.97438 * 5 4 3 34 34 H 1.09005 * 109.46720 * 60.00076 * 6 5 4 35 35 H 1.08994 * 109.47133 * 179.97438 * 6 5 4 36 36 H 1.09000 * 109.46830 * 300.00395 * 6 5 4 37 37 H 1.08998 * 109.47193 * 60.00296 * 7 5 4 38 38 H 1.09003 * 109.46668 * 179.97438 * 7 5 4 39 39 H 1.08991 * 109.46974 * 299.99457 * 7 5 4 40 40 H 0.96998 * 120.00601 * 0.02562 * 12 10 9 41 41 H 1.08993 * 109.46090 * 298.70493 * 15 13 12 42 42 H 1.09000 * 109.45742 * 58.66500 * 15 13 12 43 43 H 1.09008 * 109.49744 * 301.42126 * 16 15 13 44 44 H 1.08993 * 109.52412 * 181.33650 * 16 15 13 45 45 H 1.08990 * 109.47167 * 179.29684 * 19 17 16 46 46 H 1.09005 * 109.46783 * 299.29119 * 19 17 16 47 47 H 1.09000 * 109.47279 * 59.28973 * 19 17 16 48 48 H 0.97003 * 119.99491 * 179.97438 * 24 23 21 49 49 H 1.08996 * 109.58491 * 186.60343 * 29 20 17 50 50 H 1.08997 * 109.58111 * 66.18196 * 29 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2979 1.0778 0.0000 4 6 3.5452 0.6899 -0.0006 5 6 4.7439 1.6031 -0.0002 6 6 4.7127 2.4864 -1.2491 7 6 4.7125 2.4854 1.2495 8 8 3.5889 -0.6461 -0.0015 9 6 2.3136 -1.0991 -0.0009 10 6 1.8826 -2.5017 0.0038 11 8 0.6966 -2.7737 0.0096 12 7 2.8004 -3.4887 0.0018 13 6 2.3701 -4.8891 0.0071 14 1 1.4620 -4.9884 0.6018 15 6 3.4743 -5.7605 0.6100 16 6 3.0128 -7.2192 0.6462 17 6 2.7428 -7.7007 -0.7829 18 1 3.6749 -7.7092 -1.3478 19 6 2.1494 -9.1105 -0.7456 20 7 1.7894 -6.7817 -1.4194 21 6 0.6396 -7.2560 -1.9924 22 1 0.1793 -8.1567 -1.6138 23 6 0.0656 -6.5791 -3.0596 24 7 0.7585 -5.6690 -3.7110 25 14 -1.6902 -6.9595 -3.5715 26 1 -2.6246 -6.0751 -2.8300 27 1 -1.8418 -6.7276 -5.0304 28 1 -1.9999 -8.3783 -3.2611 29 6 2.0928 -5.3442 -1.4291 30 1 -0.3633 -0.0006 1.0277 31 1 -0.3634 0.8902 -0.5133 32 1 -0.3634 -0.8898 -0.5143 33 1 5.6557 1.0057 -0.0004 34 1 3.8009 3.0837 -1.2488 35 1 5.5795 3.1472 -1.2485 36 1 4.7350 1.8578 -2.1393 37 1 4.7349 1.8561 2.1392 38 1 5.5798 3.1456 1.2500 39 1 3.8008 3.0827 1.2497 40 1 3.7458 -3.2719 -0.0024 41 1 4.3743 -5.6794 0.0005 42 1 3.6907 -5.4229 1.6235 43 1 2.0987 -7.2971 1.2350 44 1 3.7899 -7.8361 1.0972 45 1 1.9464 -9.4463 -1.7624 46 1 2.8582 -9.7906 -0.2731 47 1 1.2210 -9.0990 -0.1746 48 1 0.3574 -5.1963 -4.4571 49 1 1.2413 -4.7937 -1.8290 50 1 2.9719 -5.1605 -2.0468 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071883808.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:12:48 Heat of formation + Delta-G solvation = -33.031732 kcal Electronic energy + Delta-G solvation = -30027.310029 eV Core-core repulsion = 26055.257026 eV Total energy + Delta-G solvation = -3972.053003 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -44.61186 -40.97823 -39.27603 -36.95572 -36.48441 -35.88996 -34.68029 -32.62581 -31.92064 -31.68044 -29.08775 -28.10973 -27.69652 -26.76268 -25.27978 -24.06880 -23.24418 -22.14365 -21.78746 -21.38220 -20.99601 -19.21864 -18.37990 -18.08695 -17.49273 -17.22318 -16.87905 -15.95685 -15.84590 -15.66690 -15.50081 -15.28974 -15.06774 -15.00458 -14.53231 -14.34679 -14.25087 -14.11378 -14.06420 -13.53372 -13.38679 -13.10327 -13.08433 -12.75936 -12.74700 -12.73526 -12.59151 -12.33113 -12.30134 -12.22018 -12.12838 -12.00442 -11.99423 -11.81878 -11.68532 -11.49154 -11.20750 -11.11471 -10.55768 -10.33629 -9.89912 -8.64319 -7.85748 -5.32224 -0.34689 1.18811 1.24876 1.41418 1.46157 1.51814 1.90098 2.05895 2.50351 2.73720 3.30636 3.51143 3.54942 3.70295 3.89746 3.91675 4.02699 4.06334 4.09759 4.22791 4.33813 4.36219 4.40948 4.56532 4.59975 4.69276 4.70736 4.76390 4.78990 4.80235 4.86942 4.89715 4.90341 4.99885 5.05149 5.05763 5.14139 5.18417 5.24346 5.28679 5.30799 5.36049 5.38367 5.54480 5.60158 5.69920 5.75890 6.24240 6.41329 6.50547 6.97038 7.15497 7.88599 8.37936 9.19466 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.013904 B = 0.003185 C = 0.002820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2013.359668 B = 8790.404225 C = 9927.013283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.074 3.926 3 N -0.498 5.498 4 C 0.231 3.769 5 C -0.001 4.001 6 C -0.142 4.142 7 C -0.139 4.139 8 O -0.188 6.188 9 C -0.135 4.135 10 C 0.602 3.398 11 O -0.545 6.545 12 N -0.696 5.696 13 C 0.131 3.869 14 H 0.061 0.939 15 C -0.108 4.108 16 C -0.117 4.117 17 C 0.152 3.848 18 H 0.022 0.978 19 C -0.129 4.129 20 N -0.602 5.602 21 C -0.249 4.249 22 H 0.077 0.923 23 C -0.054 4.054 24 N -0.935 5.935 25 Si 0.957 3.043 26 H -0.294 1.294 27 H -0.296 1.296 28 H -0.261 1.261 29 C 0.179 3.821 30 H 0.093 0.907 31 H 0.092 0.908 32 H 0.073 0.927 33 H 0.124 0.876 34 H 0.058 0.942 35 H 0.104 0.896 36 H 0.050 0.950 37 H 0.056 0.944 38 H 0.103 0.897 39 H 0.058 0.942 40 H 0.412 0.588 41 H 0.072 0.928 42 H 0.086 0.914 43 H 0.055 0.945 44 H 0.097 0.903 45 H 0.037 0.963 46 H 0.079 0.921 47 H 0.047 0.953 48 H 0.244 0.756 49 H 0.046 0.954 50 H -0.004 1.004 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.832 13.166 11.842 21.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.050 4.050 3 N -0.228 5.228 4 C 0.026 3.974 5 C -0.020 4.020 6 C -0.200 4.200 7 C -0.197 4.197 8 O -0.076 6.076 9 C -0.190 4.190 10 C 0.388 3.612 11 O -0.425 6.425 12 N -0.346 5.346 13 C 0.025 3.975 14 H 0.079 0.921 15 C -0.146 4.146 16 C -0.156 4.156 17 C 0.047 3.953 18 H 0.039 0.961 19 C -0.187 4.187 20 N -0.326 5.326 21 C -0.379 4.379 22 H 0.095 0.905 23 C -0.249 4.249 24 N -0.582 5.582 25 Si 0.786 3.214 26 H -0.222 1.222 27 H -0.222 1.222 28 H -0.186 1.186 29 C 0.052 3.948 30 H 0.111 0.889 31 H 0.111 0.889 32 H 0.092 0.908 33 H 0.142 0.858 34 H 0.077 0.923 35 H 0.123 0.877 36 H 0.069 0.931 37 H 0.075 0.925 38 H 0.122 0.878 39 H 0.077 0.923 40 H 0.248 0.752 41 H 0.091 0.909 42 H 0.104 0.896 43 H 0.074 0.926 44 H 0.116 0.884 45 H 0.057 0.943 46 H 0.098 0.902 47 H 0.066 0.934 48 H 0.053 0.947 49 H 0.065 0.935 50 H 0.014 0.986 Dipole moment (debyes) X Y Z Total from point charges 11.818 13.564 11.710 21.465 hybrid contribution -0.718 -0.687 -1.008 1.415 sum 11.100 12.877 10.702 20.089 Atomic orbital electron populations 1.20371 0.84771 1.04079 1.04256 1.22339 0.99045 0.86681 0.96924 1.70292 1.00938 1.30528 1.21016 1.27686 0.96608 0.78997 0.94156 1.20181 0.89259 0.92925 0.99674 1.21868 1.04310 0.99293 0.94480 1.21852 1.04267 0.99241 0.94297 1.84429 1.28862 1.24471 1.69812 1.22695 0.82112 0.95719 1.18490 1.16546 0.85719 0.82119 0.76836 1.90874 1.17232 1.82385 1.52019 1.45823 1.09742 1.05939 1.73106 1.21697 0.98404 0.78597 0.98805 0.92072 1.21660 0.96635 0.95050 1.01253 1.21954 1.01583 0.95092 0.96980 1.20826 0.91452 0.90542 0.92457 0.96073 1.21733 1.00638 0.95354 1.00951 1.44319 1.21408 1.01156 1.65736 1.19504 1.00237 1.09906 1.08263 0.90528 1.25807 1.02103 1.00356 0.96658 1.70170 1.36440 1.29604 1.21956 0.85402 0.81096 0.78421 0.76457 1.22184 1.22238 1.18552 1.20763 0.97597 0.85187 0.91250 0.88851 0.88916 0.90806 0.85824 0.92302 0.87691 0.93052 0.92483 0.87806 0.92311 0.75158 0.90946 0.89578 0.92612 0.88437 0.94331 0.90243 0.93404 0.94715 0.93543 0.98622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.29 9.87 71.23 0.70 -1.59 16 2 C 0.07 2.39 7.16 41.83 0.30 2.69 16 3 N -0.50 -14.22 11.26 -291.07 -3.28 -17.49 16 4 C 0.23 5.61 6.82 88.29 0.60 6.21 16 5 C 0.00 -0.01 3.39 -11.54 -0.04 -0.05 16 6 C -0.14 -1.75 9.18 71.98 0.66 -1.09 16 7 C -0.14 -1.50 9.18 71.99 0.66 -0.84 16 8 O -0.19 -5.31 10.57 -7.08 -0.07 -5.38 16 9 C -0.14 -4.58 7.18 24.05 0.17 -4.40 16 10 C 0.60 23.46 7.75 86.46 0.67 24.13 16 11 O -0.55 -25.35 14.46 -4.31 -0.06 -25.41 16 12 N -0.70 -24.30 5.08 -446.07 -2.27 -26.56 16 13 C 0.13 5.13 2.60 45.07 0.12 5.25 16 14 H 0.06 2.73 7.58 -2.39 -0.02 2.71 16 15 C -0.11 -3.21 5.35 30.62 0.16 -3.04 16 16 C -0.12 -3.57 5.37 30.67 0.16 -3.41 16 17 C 0.15 6.00 3.50 44.98 0.16 6.16 16 18 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 19 C -0.13 -4.59 7.94 71.98 0.57 -4.02 16 20 N -0.60 -30.43 2.99 -675.24 -2.02 -32.45 16 21 C -0.25 -13.88 8.60 84.03 0.72 -13.16 16 22 H 0.08 4.10 6.21 -2.91 -0.02 4.09 16 23 C -0.05 -3.18 4.96 84.86 0.42 -2.76 16 24 N -0.94 -58.36 11.14 21.65 0.24 -58.12 16 25 Si 0.96 47.56 29.58 68.60 2.03 49.59 16 26 H -0.29 -14.88 7.11 99.48 0.71 -14.17 16 27 H -0.30 -14.73 7.11 99.48 0.71 -14.02 16 28 H -0.26 -12.06 7.11 99.48 0.71 -11.35 16 29 C 0.18 9.05 4.86 86.36 0.42 9.47 16 30 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 31 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 32 H 0.07 2.57 6.48 -2.38 -0.02 2.56 16 33 H 0.12 1.19 8.14 -2.38 -0.02 1.17 16 34 H 0.06 0.89 8.14 -2.38 -0.02 0.87 16 35 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 36 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 38 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 39 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 40 H 0.41 11.64 8.40 -92.71 -0.78 10.86 16 41 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 42 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 43 H 0.06 1.80 8.14 -2.38 -0.02 1.78 16 44 H 0.10 2.26 8.14 -2.39 -0.02 2.24 16 45 H 0.04 1.52 7.62 -2.39 -0.02 1.50 16 46 H 0.08 2.16 8.14 -2.38 -0.02 2.14 16 47 H 0.05 1.74 7.44 -2.39 -0.02 1.72 16 48 H 0.24 14.98 8.31 -92.71 -0.77 14.21 16 49 H 0.05 2.82 6.06 -2.39 -0.01 2.80 16 50 H 0.00 -0.23 8.14 -2.39 -0.02 -0.24 16 Total: -1.00 -75.72 398.48 1.20 -74.52 By element: Atomic # 1 Polarization: 21.61 SS G_CDS: 0.16 Total: 21.77 kcal Atomic # 6 Polarization: 13.08 SS G_CDS: 6.47 Total: 19.54 kcal Atomic # 7 Polarization: -127.31 SS G_CDS: -7.32 Total: -134.63 kcal Atomic # 8 Polarization: -30.66 SS G_CDS: -0.14 Total: -30.80 kcal Atomic # 14 Polarization: 47.56 SS G_CDS: 2.03 Total: 49.59 kcal Total: -75.72 1.20 -74.52 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071883808.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.489 kcal (2) G-P(sol) polarization free energy of solvation -75.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds