Wall clock time and date at job start Tue Mar 31 2020 20:12:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.33698 * 126.26919 * 2 1 4 4 C 1.30618 * 108.99059 * 180.23454 * 3 2 1 5 5 C 1.50704 * 125.42032 * 179.76529 * 4 3 2 6 6 C 1.52999 * 109.47081 * 299.99679 * 5 4 3 7 7 C 1.52996 * 109.47091 * 59.99926 * 5 4 3 8 8 O 1.33657 * 109.15806 * 359.76156 * 4 3 2 9 9 C 1.35349 * 107.68616 * 0.02562 * 8 4 3 10 10 C 1.46719 * 126.64913 * 179.97438 * 9 8 4 11 11 O 1.21682 * 120.00094 * 180.30226 * 10 9 8 12 12 N 1.34781 * 119.99436 * 0.02932 * 10 9 8 13 13 C 1.46500 * 119.99400 * 179.97438 * 12 10 9 14 14 H 1.08992 * 109.49969 * 34.93680 * 13 12 10 15 15 C 1.53046 * 109.49629 * 155.00351 * 13 12 10 16 16 C 1.53037 * 109.53922 * 58.58192 * 15 13 12 17 17 C 1.53195 * 109.31056 * 61.36643 * 16 15 13 18 18 H 1.09004 * 109.58403 * 65.29743 * 17 16 15 19 19 C 1.53002 * 109.58819 * 185.57337 * 17 16 15 20 20 N 1.46921 * 108.77950 * 305.36818 * 17 16 15 21 21 C 1.36940 * 120.63008 * 233.58606 * 20 17 16 22 22 H 1.08003 * 120.00030 * 29.02159 * 21 20 17 23 23 C 1.38808 * 119.99974 * 209.01574 * 21 20 17 24 24 N 1.31616 * 120.00163 * 15.02918 * 23 21 20 25 25 Si 1.86806 * 119.99837 * 195.03150 * 23 21 20 26 26 H 1.48497 * 109.47169 * 89.99894 * 25 23 21 27 27 H 1.48497 * 109.46976 * 209.99929 * 25 23 21 28 28 H 1.48493 * 109.46926 * 329.99909 * 25 23 21 29 29 C 1.46925 * 118.74126 * 53.60154 * 20 17 16 30 30 H 1.09001 * 109.47026 * 270.16622 * 1 2 3 31 31 H 1.08996 * 109.47434 * 30.16576 * 1 2 3 32 32 H 1.09000 * 109.46754 * 150.17064 * 1 2 3 33 33 H 1.09002 * 109.47052 * 179.97438 * 5 4 3 34 34 H 1.08997 * 109.46907 * 300.00221 * 6 5 4 35 35 H 1.09003 * 109.46844 * 60.00368 * 6 5 4 36 36 H 1.08998 * 109.47042 * 179.97438 * 6 5 4 37 37 H 1.08999 * 109.47734 * 59.99959 * 7 5 4 38 38 H 1.09007 * 109.47254 * 180.02562 * 7 5 4 39 39 H 1.09003 * 109.47375 * 299.99963 * 7 5 4 40 40 H 0.96994 * 120.00203 * 359.97438 * 12 10 9 41 41 H 1.08998 * 109.46018 * 178.60980 * 15 13 12 42 42 H 1.09002 * 109.45707 * 298.57931 * 15 13 12 43 43 H 1.09000 * 109.49697 * 181.31900 * 16 15 13 44 44 H 1.08997 * 109.50274 * 301.41927 * 16 15 13 45 45 H 1.08997 * 109.46713 * 60.00299 * 19 17 16 46 46 H 1.08995 * 109.47232 * 180.02562 * 19 17 16 47 47 H 1.09001 * 109.47502 * 300.00629 * 19 17 16 48 48 H 0.97003 * 119.99825 * 180.02562 * 24 23 21 49 49 H 1.09001 * 109.58881 * 186.60589 * 29 20 17 50 50 H 1.09002 * 109.58271 * 66.18387 * 29 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2980 1.0779 0.0000 4 6 3.5452 0.6900 -0.0051 5 6 4.7440 1.6033 -0.0118 6 6 4.7069 2.4841 -1.2623 7 6 4.7182 2.4879 1.2362 8 8 3.5890 -0.6459 -0.0032 9 6 2.3137 -1.0991 0.0027 10 6 1.8827 -2.5016 0.0061 11 8 0.6967 -2.7736 0.0059 12 7 2.8006 -3.4886 0.0039 13 6 2.3702 -4.8889 0.0079 14 1 1.4559 -4.9902 -0.5766 15 6 3.4676 -5.7622 -0.6049 16 6 4.7614 -5.5949 0.1952 17 6 4.5277 -6.0536 1.6381 18 1 4.3211 -7.1238 1.6523 19 6 5.7728 -5.7604 2.4775 20 7 3.3793 -5.3201 2.1874 21 6 3.4903 -4.6315 3.3659 22 1 4.4436 -4.2203 3.6634 23 6 2.3774 -4.4619 4.1781 24 7 1.3018 -5.1947 3.9821 25 14 2.4064 -3.1936 5.5493 26 1 1.9169 -1.8915 5.0296 27 1 1.5294 -3.6447 6.6594 28 1 3.7960 -3.0363 6.0487 29 6 2.1095 -5.3397 1.4486 30 1 -0.3633 0.0030 1.0277 31 1 -0.3634 0.8884 -0.5164 32 1 -0.3633 -0.8915 -0.5112 33 1 5.6558 1.0060 -0.0146 34 1 4.7253 1.8538 -2.1513 35 1 3.7952 3.0814 -1.2590 36 1 5.5737 3.1450 -1.2669 37 1 4.7446 1.8604 2.1270 38 1 5.5850 3.1488 1.2311 39 1 3.8064 3.0852 1.2394 40 1 3.7460 -3.2717 -0.0003 41 1 3.1571 -6.8068 -0.5791 42 1 3.6380 -5.4595 -1.6380 43 1 5.5487 -6.1991 -0.2557 44 1 5.0590 -4.5464 0.1906 45 1 5.9748 -4.6894 2.4661 46 1 5.6047 -6.0879 3.5035 47 1 6.6262 -6.2955 2.0609 48 1 0.5240 -5.0759 4.5494 49 1 1.4009 -4.6597 1.9217 50 1 1.7032 -6.3511 1.4472 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071883810.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:12:57 Heat of formation + Delta-G solvation = -8.486742 kcal Electronic energy + Delta-G solvation = -31040.856904 eV Core-core repulsion = 27069.868252 eV Total energy + Delta-G solvation = -3970.988652 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -43.30935 -39.45528 -37.60943 -35.99484 -35.13098 -34.10165 -32.75840 -31.18124 -30.49769 -29.89085 -27.65997 -27.44921 -26.17918 -25.02246 -24.19638 -22.22805 -22.02238 -20.68160 -20.51836 -20.29318 -18.76471 -17.97448 -16.78928 -16.35727 -16.26162 -15.48782 -15.08211 -14.65684 -14.45546 -14.28502 -14.00396 -13.91447 -13.56395 -13.39066 -13.19411 -13.07419 -12.99981 -12.76804 -12.50357 -12.44233 -12.22452 -11.95330 -11.89072 -11.55289 -11.31966 -11.26664 -11.18551 -10.98209 -10.90828 -10.82578 -10.73309 -10.64739 -10.39376 -10.34113 -9.97387 -9.73026 -9.51708 -9.47414 -8.73887 -8.45844 -8.37193 -6.61760 -5.75408 -3.19578 1.03829 2.50255 2.54127 3.37939 3.44236 3.45186 3.46139 3.62381 3.93215 4.49720 4.59283 4.75802 4.77242 4.93218 5.11756 5.28636 5.33285 5.36755 5.37991 5.45510 5.48437 5.53537 5.57554 5.57985 5.70424 5.72474 5.83741 5.92892 5.97922 5.98173 6.03360 6.08409 6.10723 6.12478 6.30208 6.32978 6.40978 6.46502 6.48870 6.58063 6.63594 6.83432 7.02440 7.09406 7.33059 7.62318 7.70133 7.83163 7.98837 8.48093 8.55885 9.23036 9.87246 10.42813 11.32483 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.009969 B = 0.004507 C = 0.004197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2808.061939 B = 6210.766720 C = 6670.432612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.068 3.932 3 N -0.483 5.483 4 C 0.212 3.788 5 C 0.002 3.998 6 C -0.142 4.142 7 C -0.145 4.145 8 O -0.186 6.186 9 C -0.101 4.101 10 C 0.606 3.394 11 O -0.520 6.520 12 N -0.685 5.685 13 C 0.117 3.883 14 H 0.080 0.920 15 C -0.118 4.118 16 C -0.132 4.132 17 C 0.166 3.834 18 H 0.026 0.974 19 C -0.136 4.136 20 N -0.583 5.583 21 C -0.250 4.250 22 H 0.068 0.932 23 C 0.007 3.993 24 N -0.899 5.899 25 Si 0.894 3.106 26 H -0.289 1.289 27 H -0.290 1.290 28 H -0.280 1.280 29 C 0.161 3.839 30 H 0.080 0.920 31 H 0.072 0.928 32 H 0.095 0.905 33 H 0.099 0.901 34 H 0.058 0.942 35 H 0.070 0.930 36 H 0.072 0.928 37 H 0.061 0.939 38 H 0.072 0.928 39 H 0.070 0.930 40 H 0.399 0.601 41 H 0.073 0.927 42 H 0.052 0.948 43 H 0.054 0.946 44 H 0.054 0.946 45 H 0.051 0.949 46 H 0.060 0.940 47 H 0.037 0.963 48 H 0.253 0.747 49 H 0.098 0.902 50 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.489 9.848 -11.431 16.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.055 4.055 3 N -0.212 5.212 4 C 0.006 3.994 5 C -0.017 4.017 6 C -0.200 4.200 7 C -0.203 4.203 8 O -0.072 6.072 9 C -0.156 4.156 10 C 0.391 3.609 11 O -0.398 6.398 12 N -0.334 5.334 13 C 0.011 3.989 14 H 0.098 0.902 15 C -0.156 4.156 16 C -0.171 4.171 17 C 0.059 3.941 18 H 0.043 0.957 19 C -0.193 4.193 20 N -0.306 5.306 21 C -0.380 4.380 22 H 0.085 0.915 23 C -0.192 4.192 24 N -0.543 5.543 25 Si 0.724 3.276 26 H -0.216 1.216 27 H -0.217 1.217 28 H -0.205 1.205 29 C 0.034 3.966 30 H 0.099 0.901 31 H 0.091 0.909 32 H 0.114 0.886 33 H 0.117 0.883 34 H 0.078 0.922 35 H 0.089 0.911 36 H 0.090 0.910 37 H 0.080 0.920 38 H 0.091 0.909 39 H 0.089 0.911 40 H 0.235 0.765 41 H 0.092 0.908 42 H 0.070 0.930 43 H 0.073 0.927 44 H 0.072 0.928 45 H 0.070 0.930 46 H 0.080 0.920 47 H 0.056 0.944 48 H 0.064 0.936 49 H 0.116 0.884 50 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 6.377 10.178 -11.303 16.493 hybrid contribution 0.664 0.005 0.901 1.119 sum 7.041 10.183 -10.402 16.170 Atomic orbital electron populations 1.20342 0.85452 1.03908 1.03716 1.21995 0.98254 0.86434 0.98865 1.70206 1.00269 1.31122 1.19650 1.26420 0.95582 0.79365 0.98008 1.19707 0.90570 0.93119 0.98348 1.21834 1.03354 0.99349 0.95454 1.21852 1.03299 0.99390 0.95712 1.84448 1.30072 1.23510 1.69218 1.23178 0.80945 0.96743 1.14709 1.16227 0.86003 0.81134 0.77583 1.90827 1.15734 1.81639 1.51638 1.45779 1.09248 1.06230 1.72182 1.21913 0.96775 0.78796 1.01401 0.90235 1.21693 0.95935 1.00070 0.97942 1.22080 0.96143 1.00692 0.98188 1.20459 0.88973 0.94242 0.90435 0.95670 1.21795 0.95904 1.00875 1.00742 1.44045 1.06834 1.56989 1.22742 1.19085 0.96054 1.26667 0.96155 0.91469 1.25029 0.97775 0.98815 0.97571 1.69972 1.04803 1.39025 1.40471 0.86420 0.77388 0.81818 0.81950 1.21626 1.21657 1.20511 1.21214 0.89437 0.99497 0.86417 0.90141 0.90939 0.88630 0.88254 0.92246 0.91133 0.90955 0.91951 0.90928 0.91132 0.76540 0.90844 0.92962 0.92738 0.92754 0.92993 0.92047 0.94404 0.93641 0.88363 0.95390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.18 9.87 36.01 0.36 -0.82 16 2 C 0.07 1.19 7.16 -82.46 -0.59 0.60 16 3 N -0.48 -7.79 11.26 -7.07 -0.08 -7.87 16 4 C 0.21 3.11 6.82 -12.79 -0.09 3.02 16 5 C 0.00 0.02 3.39 -91.77 -0.31 -0.29 16 6 C -0.14 -1.15 9.18 37.16 0.34 -0.81 16 7 C -0.14 -1.34 9.17 37.16 0.34 -1.00 16 8 O -0.19 -3.11 10.57 4.43 0.05 -3.06 16 9 C -0.10 -1.86 7.18 -36.84 -0.26 -2.12 16 10 C 0.61 12.12 7.76 -12.83 -0.10 12.02 16 11 O -0.52 -11.43 14.45 5.20 0.08 -11.35 16 12 N -0.69 -12.81 4.91 -54.98 -0.27 -13.08 16 13 C 0.12 2.21 2.81 -67.81 -0.19 2.01 16 14 H 0.08 1.51 7.57 -51.93 -0.39 1.12 16 15 C -0.12 -1.85 5.59 -26.69 -0.15 -2.00 16 16 C -0.13 -2.09 5.21 -26.61 -0.14 -2.23 16 17 C 0.17 3.24 3.50 -67.60 -0.24 3.00 16 18 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 19 C -0.14 -2.46 7.94 37.16 0.30 -2.16 16 20 N -0.58 -13.81 2.91 -164.77 -0.48 -14.29 16 21 C -0.25 -6.62 8.61 -15.06 -0.13 -6.75 16 22 H 0.07 1.76 6.20 -52.48 -0.33 1.43 16 23 C 0.01 0.20 4.96 -17.43 -0.09 0.11 16 24 N -0.90 -26.31 11.14 55.49 0.62 -25.69 16 25 Si 0.89 22.32 29.58 -169.99 -5.03 17.29 16 26 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 27 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 28 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 29 C 0.16 3.80 4.89 -3.71 -0.02 3.78 16 30 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 31 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 32 H 0.10 1.52 6.47 -51.93 -0.34 1.18 16 33 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.07 0.48 8.14 -51.92 -0.42 0.06 16 39 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 40 H 0.40 6.99 6.57 -40.82 -0.27 6.72 16 41 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 42 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 44 H 0.05 0.87 6.40 -51.93 -0.33 0.54 16 45 H 0.05 0.95 7.40 -51.93 -0.38 0.57 16 46 H 0.06 1.22 7.66 -51.93 -0.40 0.82 16 47 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 48 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 49 H 0.10 2.74 6.06 -51.93 -0.31 2.42 16 50 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 394.94 15.07 5.95 5.95 Total: -1.00 -31.47 394.94 -8.36 -39.83 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: -8.23 Total: 5.90 kcal Atomic # 6 Polarization: 7.34 SS G_CDS: -0.97 Total: 6.37 kcal Atomic # 7 Polarization: -60.72 SS G_CDS: -0.21 Total: -60.93 kcal Atomic # 8 Polarization: -14.54 SS G_CDS: 0.12 Total: -14.41 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.03 Total: 17.29 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -31.47 -8.36 -39.83 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071883810.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.347 kcal (2) G-P(sol) polarization free energy of solvation -31.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds