Wall clock time and date at job start Tue Mar 31 2020 20:12:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.33698 * 126.26919 * 2 1 4 4 C 1.30618 * 108.99059 * 180.23454 * 3 2 1 5 5 C 1.50704 * 125.42032 * 179.76529 * 4 3 2 6 6 C 1.52999 * 109.47081 * 299.99679 * 5 4 3 7 7 C 1.52996 * 109.47091 * 59.99926 * 5 4 3 8 8 O 1.33657 * 109.15806 * 359.76156 * 4 3 2 9 9 C 1.35349 * 107.68616 * 0.02562 * 8 4 3 10 10 C 1.46719 * 126.64913 * 179.97438 * 9 8 4 11 11 O 1.21682 * 120.00094 * 180.30226 * 10 9 8 12 12 N 1.34781 * 119.99436 * 0.02932 * 10 9 8 13 13 C 1.46500 * 119.99400 * 179.97438 * 12 10 9 14 14 H 1.08992 * 109.49969 * 34.93680 * 13 12 10 15 15 C 1.53046 * 109.49629 * 155.00351 * 13 12 10 16 16 C 1.53037 * 109.53922 * 58.58192 * 15 13 12 17 17 C 1.53195 * 109.31056 * 61.36643 * 16 15 13 18 18 H 1.09004 * 109.58403 * 65.29743 * 17 16 15 19 19 C 1.53002 * 109.58819 * 185.57337 * 17 16 15 20 20 N 1.46921 * 108.77950 * 305.36818 * 17 16 15 21 21 C 1.36940 * 120.63008 * 233.58606 * 20 17 16 22 22 H 1.08003 * 120.00030 * 29.02159 * 21 20 17 23 23 C 1.38808 * 119.99974 * 209.01574 * 21 20 17 24 24 N 1.31616 * 120.00163 * 15.02918 * 23 21 20 25 25 Si 1.86806 * 119.99837 * 195.03150 * 23 21 20 26 26 H 1.48497 * 109.47169 * 89.99894 * 25 23 21 27 27 H 1.48497 * 109.46976 * 209.99929 * 25 23 21 28 28 H 1.48493 * 109.46926 * 329.99909 * 25 23 21 29 29 C 1.46925 * 118.74126 * 53.60154 * 20 17 16 30 30 H 1.09001 * 109.47026 * 270.16622 * 1 2 3 31 31 H 1.08996 * 109.47434 * 30.16576 * 1 2 3 32 32 H 1.09000 * 109.46754 * 150.17064 * 1 2 3 33 33 H 1.09002 * 109.47052 * 179.97438 * 5 4 3 34 34 H 1.08997 * 109.46907 * 300.00221 * 6 5 4 35 35 H 1.09003 * 109.46844 * 60.00368 * 6 5 4 36 36 H 1.08998 * 109.47042 * 179.97438 * 6 5 4 37 37 H 1.08999 * 109.47734 * 59.99959 * 7 5 4 38 38 H 1.09007 * 109.47254 * 180.02562 * 7 5 4 39 39 H 1.09003 * 109.47375 * 299.99963 * 7 5 4 40 40 H 0.96994 * 120.00203 * 359.97438 * 12 10 9 41 41 H 1.08998 * 109.46018 * 178.60980 * 15 13 12 42 42 H 1.09002 * 109.45707 * 298.57931 * 15 13 12 43 43 H 1.09000 * 109.49697 * 181.31900 * 16 15 13 44 44 H 1.08997 * 109.50274 * 301.41927 * 16 15 13 45 45 H 1.08997 * 109.46713 * 60.00299 * 19 17 16 46 46 H 1.08995 * 109.47232 * 180.02562 * 19 17 16 47 47 H 1.09001 * 109.47502 * 300.00629 * 19 17 16 48 48 H 0.97003 * 119.99825 * 180.02562 * 24 23 21 49 49 H 1.09001 * 109.58881 * 186.60589 * 29 20 17 50 50 H 1.09002 * 109.58271 * 66.18387 * 29 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2980 1.0779 0.0000 4 6 3.5452 0.6900 -0.0051 5 6 4.7440 1.6033 -0.0118 6 6 4.7069 2.4841 -1.2623 7 6 4.7182 2.4879 1.2362 8 8 3.5890 -0.6459 -0.0032 9 6 2.3137 -1.0991 0.0027 10 6 1.8827 -2.5016 0.0061 11 8 0.6967 -2.7736 0.0059 12 7 2.8006 -3.4886 0.0039 13 6 2.3702 -4.8889 0.0079 14 1 1.4559 -4.9902 -0.5766 15 6 3.4676 -5.7622 -0.6049 16 6 4.7614 -5.5949 0.1952 17 6 4.5277 -6.0536 1.6381 18 1 4.3211 -7.1238 1.6523 19 6 5.7728 -5.7604 2.4775 20 7 3.3793 -5.3201 2.1874 21 6 3.4903 -4.6315 3.3659 22 1 4.4436 -4.2203 3.6634 23 6 2.3774 -4.4619 4.1781 24 7 1.3018 -5.1947 3.9821 25 14 2.4064 -3.1936 5.5493 26 1 1.9169 -1.8915 5.0296 27 1 1.5294 -3.6447 6.6594 28 1 3.7960 -3.0363 6.0487 29 6 2.1095 -5.3397 1.4486 30 1 -0.3633 0.0030 1.0277 31 1 -0.3634 0.8884 -0.5164 32 1 -0.3633 -0.8915 -0.5112 33 1 5.6558 1.0060 -0.0146 34 1 4.7253 1.8538 -2.1513 35 1 3.7952 3.0814 -1.2590 36 1 5.5737 3.1450 -1.2669 37 1 4.7446 1.8604 2.1270 38 1 5.5850 3.1488 1.2311 39 1 3.8064 3.0852 1.2394 40 1 3.7460 -3.2717 -0.0003 41 1 3.1571 -6.8068 -0.5791 42 1 3.6380 -5.4595 -1.6380 43 1 5.5487 -6.1991 -0.2557 44 1 5.0590 -4.5464 0.1906 45 1 5.9748 -4.6894 2.4661 46 1 5.6047 -6.0879 3.5035 47 1 6.6262 -6.2955 2.0609 48 1 0.5240 -5.0759 4.5494 49 1 1.4009 -4.6597 1.9217 50 1 1.7032 -6.3511 1.4472 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071883810.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:12:56 Heat of formation + Delta-G solvation = -30.091839 kcal Electronic energy + Delta-G solvation = -31041.793771 eV Core-core repulsion = 27069.868252 eV Total energy + Delta-G solvation = -3971.925520 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -44.57955 -41.01742 -39.21633 -36.93501 -36.37555 -35.73550 -34.54771 -32.61183 -31.87623 -31.69099 -28.98579 -28.11928 -27.82738 -26.78534 -25.35031 -23.94238 -23.35232 -22.13425 -21.92536 -21.40694 -20.41742 -19.39881 -18.24904 -18.08121 -17.42389 -17.11795 -16.73555 -15.99197 -15.87789 -15.65620 -15.55475 -15.29708 -15.05290 -14.78244 -14.51120 -14.34881 -14.22547 -14.07139 -14.01585 -13.69159 -13.36102 -13.09503 -13.04772 -12.89575 -12.73614 -12.67511 -12.59686 -12.44046 -12.33520 -12.20723 -12.14734 -12.10012 -11.99785 -11.81837 -11.60822 -11.30071 -11.16657 -11.08247 -10.56066 -10.23536 -9.82278 -8.59776 -7.84751 -5.29287 -0.30133 1.23591 1.28854 1.34990 1.38463 1.44495 1.96763 2.21298 2.46218 2.76518 3.30742 3.57784 3.59268 3.62066 3.91420 3.96764 4.02194 4.07036 4.12049 4.16549 4.37482 4.41585 4.46013 4.59151 4.61973 4.71617 4.72242 4.76609 4.77752 4.81139 4.88672 4.90040 4.93978 5.00111 5.03261 5.06523 5.09294 5.18707 5.23711 5.29398 5.29737 5.37189 5.53406 5.55918 5.61868 5.70533 5.72576 6.31290 6.42084 6.54628 7.04766 7.16749 7.91003 8.40722 9.20145 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.009969 B = 0.004507 C = 0.004197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2808.061939 B = 6210.766720 C = 6670.432612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.067 3.933 3 N -0.497 5.497 4 C 0.226 3.774 5 C -0.001 4.001 6 C -0.137 4.137 7 C -0.142 4.142 8 O -0.191 6.191 9 C -0.133 4.133 10 C 0.601 3.399 11 O -0.551 6.551 12 N -0.678 5.678 13 C 0.125 3.875 14 H 0.076 0.924 15 C -0.110 4.110 16 C -0.121 4.121 17 C 0.154 3.846 18 H 0.019 0.981 19 C -0.128 4.128 20 N -0.596 5.596 21 C -0.236 4.236 22 H 0.073 0.927 23 C -0.051 4.051 24 N -0.933 5.933 25 Si 0.943 3.057 26 H -0.302 1.302 27 H -0.296 1.296 28 H -0.262 1.262 29 C 0.170 3.830 30 H 0.076 0.924 31 H 0.098 0.902 32 H 0.085 0.915 33 H 0.121 0.879 34 H 0.057 0.943 35 H 0.058 0.942 36 H 0.104 0.896 37 H 0.045 0.955 38 H 0.106 0.894 39 H 0.059 0.941 40 H 0.407 0.593 41 H 0.080 0.920 42 H 0.085 0.915 43 H 0.092 0.908 44 H 0.056 0.944 45 H 0.047 0.953 46 H 0.035 0.965 47 H 0.076 0.924 48 H 0.243 0.757 49 H 0.050 0.950 50 H 0.004 0.996 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.909 11.192 -13.192 20.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.057 4.057 3 N -0.227 5.227 4 C 0.021 3.979 5 C -0.021 4.021 6 C -0.194 4.194 7 C -0.200 4.200 8 O -0.078 6.078 9 C -0.188 4.188 10 C 0.387 3.613 11 O -0.432 6.432 12 N -0.327 5.327 13 C 0.020 3.980 14 H 0.094 0.906 15 C -0.148 4.148 16 C -0.160 4.160 17 C 0.049 3.951 18 H 0.036 0.964 19 C -0.186 4.186 20 N -0.319 5.319 21 C -0.366 4.366 22 H 0.091 0.909 23 C -0.246 4.246 24 N -0.580 5.580 25 Si 0.773 3.227 26 H -0.230 1.230 27 H -0.223 1.223 28 H -0.186 1.186 29 C 0.043 3.957 30 H 0.094 0.906 31 H 0.116 0.884 32 H 0.104 0.896 33 H 0.139 0.861 34 H 0.076 0.924 35 H 0.078 0.922 36 H 0.122 0.878 37 H 0.065 0.935 38 H 0.125 0.875 39 H 0.078 0.922 40 H 0.243 0.757 41 H 0.099 0.901 42 H 0.104 0.896 43 H 0.111 0.889 44 H 0.075 0.925 45 H 0.066 0.934 46 H 0.054 0.946 47 H 0.095 0.905 48 H 0.053 0.947 49 H 0.068 0.932 50 H 0.022 0.978 Dipole moment (debyes) X Y Z Total from point charges 9.854 11.521 -13.079 20.023 hybrid contribution -0.312 -0.362 1.426 1.504 sum 9.542 11.159 -11.653 18.745 Atomic orbital electron populations 1.20356 0.84568 1.04655 1.03599 1.22382 0.99179 0.86676 0.97474 1.70267 1.00880 1.30565 1.20979 1.27661 0.96663 0.79041 0.94578 1.20162 0.89238 0.92932 0.99736 1.21835 1.04294 0.99170 0.94117 1.21869 1.04366 0.99261 0.94480 1.84435 1.29173 1.24510 1.69672 1.22870 0.81977 0.96211 1.17760 1.16479 0.85802 0.82051 0.76965 1.90799 1.16951 1.82421 1.53029 1.45697 1.09441 1.05850 1.71755 1.21687 0.98547 0.79619 0.98175 0.90615 1.21678 0.94263 0.99561 0.99289 1.21970 0.97246 1.01429 0.95316 1.20770 0.87822 0.93449 0.93054 0.96366 1.21724 0.96541 1.01058 0.99264 1.44261 1.07923 1.57529 1.22233 1.19381 0.95711 1.25241 0.96312 0.90932 1.25649 0.98092 1.00842 1.00009 1.70130 1.05228 1.41024 1.41597 0.85607 0.77904 0.79289 0.79853 1.23032 1.22276 1.18615 1.20894 0.88726 0.97034 0.89044 0.90585 0.88362 0.89639 0.86107 0.92376 0.92239 0.87768 0.93536 0.87517 0.92229 0.75672 0.90147 0.89627 0.88910 0.92490 0.93365 0.94601 0.90476 0.94746 0.93197 0.97765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.33 9.87 71.24 0.70 -1.62 16 2 C 0.07 2.35 7.16 41.83 0.30 2.65 16 3 N -0.50 -15.73 11.26 -291.06 -3.28 -19.00 16 4 C 0.23 6.32 6.82 88.29 0.60 6.92 16 5 C 0.00 -0.02 3.39 -11.54 -0.04 -0.06 16 6 C -0.14 -1.77 9.18 71.98 0.66 -1.11 16 7 C -0.14 -2.26 9.17 71.98 0.66 -1.60 16 8 O -0.19 -6.22 10.57 -7.08 -0.07 -6.29 16 9 C -0.13 -4.98 7.18 24.04 0.17 -4.80 16 10 C 0.60 24.69 7.76 86.46 0.67 25.36 16 11 O -0.55 -25.42 14.45 -4.29 -0.06 -25.48 16 12 N -0.68 -25.26 4.91 -446.09 -2.19 -27.45 16 13 C 0.13 4.74 2.81 45.07 0.13 4.86 16 14 H 0.08 2.93 7.57 -2.39 -0.02 2.91 16 15 C -0.11 -3.13 5.59 30.62 0.17 -2.96 16 16 C -0.12 -3.40 5.21 30.67 0.16 -3.24 16 17 C 0.15 5.77 3.50 44.98 0.16 5.93 16 18 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 19 C -0.13 -4.35 7.94 71.98 0.57 -3.77 16 20 N -0.60 -28.46 2.91 -675.22 -1.96 -30.43 16 21 C -0.24 -12.65 8.61 84.03 0.72 -11.92 16 22 H 0.07 3.77 6.20 -2.91 -0.02 3.75 16 23 C -0.05 -2.92 4.96 84.86 0.42 -2.50 16 24 N -0.93 -57.40 11.14 21.65 0.24 -57.16 16 25 Si 0.94 47.17 29.58 68.60 2.03 49.20 16 26 H -0.30 -15.59 7.11 99.48 0.71 -14.88 16 27 H -0.30 -14.94 7.11 99.48 0.71 -14.23 16 28 H -0.26 -12.16 7.11 99.48 0.71 -11.45 16 29 C 0.17 8.31 4.89 86.36 0.42 8.74 16 30 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 31 H 0.10 2.47 8.14 -2.39 -0.02 2.45 16 32 H 0.08 2.84 6.47 -2.39 -0.02 2.82 16 33 H 0.12 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 37 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.11 0.99 8.14 -2.38 -0.02 0.97 16 39 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.41 13.72 6.57 -92.71 -0.61 13.11 16 41 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 42 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 43 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 44 H 0.06 1.61 6.40 -2.39 -0.02 1.59 16 45 H 0.05 1.65 7.40 -2.39 -0.02 1.63 16 46 H 0.03 1.37 7.66 -2.39 -0.02 1.35 16 47 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 48 H 0.24 14.85 8.31 -92.71 -0.77 14.08 16 49 H 0.05 2.94 6.06 -2.39 -0.01 2.93 16 50 H 0.00 0.23 8.14 -2.39 -0.02 0.21 16 Total: -1.00 -72.90 394.94 1.52 -71.38 By element: Atomic # 1 Polarization: 24.05 SS G_CDS: 0.33 Total: 24.38 kcal Atomic # 6 Polarization: 14.37 SS G_CDS: 6.48 Total: 20.86 kcal Atomic # 7 Polarization: -126.85 SS G_CDS: -7.19 Total: -134.04 kcal Atomic # 8 Polarization: -31.64 SS G_CDS: -0.14 Total: -31.78 kcal Atomic # 14 Polarization: 47.17 SS G_CDS: 2.03 Total: 49.20 kcal Total: -72.90 1.52 -71.38 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071883810.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.287 kcal (2) G-P(sol) polarization free energy of solvation -72.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds