Wall clock time and date at job start Tue Mar 31 2020 20:11:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.33693 * 126.27388 * 2 1 4 4 C 1.30617 * 108.99564 * 180.25767 * 3 2 1 5 5 C 1.50697 * 125.42031 * 179.74746 * 4 3 2 6 6 C 1.53002 * 109.47280 * 300.01934 * 5 4 3 7 7 C 1.52998 * 109.47379 * 60.02357 * 5 4 3 8 8 O 1.33662 * 109.15358 * 359.76629 * 4 3 2 9 9 C 1.35341 * 107.68778 * 359.97438 * 8 4 3 10 10 C 1.46716 * 126.64676 * 179.97438 * 9 8 4 11 11 O 1.21684 * 120.00295 * 180.02562 * 10 9 8 12 12 N 1.34776 * 120.00036 * 0.02928 * 10 9 8 13 13 C 1.46506 * 120.00391 * 180.02562 * 12 10 9 14 14 H 1.09000 * 109.46872 * 34.99635 * 13 12 10 15 15 C 1.52999 * 109.46691 * 275.00006 * 13 12 10 16 16 C 1.53006 * 109.46626 * 179.97438 * 15 13 12 17 17 C 1.52997 * 109.47164 * 59.99702 * 16 15 13 18 18 C 1.53002 * 109.47415 * 300.00027 * 17 16 15 19 19 C 1.52996 * 109.46972 * 59.99860 * 18 17 16 20 20 H 1.09000 * 109.47054 * 60.00300 * 19 18 17 21 21 N 1.46500 * 109.46993 * 180.02562 * 19 18 17 22 22 C 1.36937 * 120.00054 * 275.00012 * 21 19 18 23 23 H 1.07996 * 119.99804 * 0.02562 * 22 21 19 24 24 C 1.38812 * 119.99902 * 179.97438 * 22 21 19 25 25 N 1.31623 * 119.99677 * 179.97438 * 24 22 21 26 26 Si 1.86796 * 120.00127 * 0.02562 * 24 22 21 27 27 H 1.48493 * 109.47451 * 89.99527 * 26 24 22 28 28 H 1.48509 * 109.46990 * 209.99620 * 26 24 22 29 29 H 1.48501 * 109.46950 * 329.99146 * 26 24 22 30 30 H 1.09003 * 109.47368 * 270.13420 * 1 2 3 31 31 H 1.09000 * 109.47812 * 30.13905 * 1 2 3 32 32 H 1.09005 * 109.47023 * 150.13404 * 1 2 3 33 33 H 1.08998 * 109.47188 * 180.02562 * 5 4 3 34 34 H 1.09003 * 109.47167 * 179.97438 * 6 5 4 35 35 H 1.09002 * 109.47086 * 300.00304 * 6 5 4 36 36 H 1.09002 * 109.46703 * 60.00688 * 6 5 4 37 37 H 1.08997 * 109.47260 * 59.99790 * 7 5 4 38 38 H 1.09003 * 109.47507 * 179.97438 * 7 5 4 39 39 H 1.09001 * 109.46971 * 299.99528 * 7 5 4 40 40 H 0.97001 * 120.00215 * 359.97438 * 12 10 9 41 41 H 1.08993 * 109.47839 * 59.99891 * 15 13 12 42 42 H 1.09000 * 109.47160 * 299.99453 * 15 13 12 43 43 H 1.09001 * 109.46998 * 179.97438 * 16 15 13 44 44 H 1.09000 * 109.47050 * 299.99699 * 16 15 13 45 45 H 1.09000 * 109.47140 * 60.00051 * 17 16 15 46 46 H 1.09001 * 109.47230 * 179.97438 * 17 16 15 47 47 H 1.08992 * 109.46974 * 180.02562 * 18 17 16 48 48 H 1.08996 * 109.46550 * 300.00288 * 18 17 16 49 49 H 0.96999 * 120.00261 * 95.00272 * 21 19 18 50 50 H 0.97001 * 119.99723 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2979 1.0778 0.0000 4 6 3.5452 0.6899 -0.0056 5 6 4.7439 1.6031 -0.0129 6 6 4.7061 2.4844 -1.2631 7 6 4.7190 2.4875 1.2354 8 8 3.5889 -0.6460 -0.0041 9 6 2.3136 -1.0992 0.0032 10 6 1.8827 -2.5016 0.0067 11 8 0.6966 -2.7737 0.0129 12 7 2.8004 -3.4887 0.0031 13 6 2.3701 -4.8891 0.0060 14 1 1.4560 -4.9895 -0.5791 15 6 2.1068 -5.3386 1.4446 16 6 1.6568 -6.8010 1.4476 17 6 2.7534 -7.6733 0.8332 18 6 3.0167 -7.2237 -0.6053 19 6 3.4667 -5.7614 -0.6083 20 1 4.3809 -5.6614 -0.0233 21 7 3.7182 -5.3307 -1.9858 22 6 4.9352 -5.5695 -2.5665 23 1 5.7094 -6.0757 -2.0090 24 6 5.1733 -5.1619 -3.8718 25 7 6.3432 -5.3910 -4.4297 26 14 3.8340 -4.2870 -4.8362 27 1 3.9460 -2.8219 -4.6214 28 1 3.9878 -4.5885 -6.2822 29 1 2.5034 -4.7551 -4.3717 30 1 -0.3634 0.0024 1.0277 31 1 -0.3635 0.8887 -0.5160 32 1 -0.3633 -0.8912 -0.5118 33 1 5.6556 1.0059 -0.0169 34 1 5.5729 3.1452 -1.2681 35 1 4.7238 1.8543 -2.1524 36 1 3.7943 3.0817 -1.2590 37 1 4.7459 1.8597 2.1260 38 1 5.5863 3.1477 1.2303 39 1 3.8072 3.0848 1.2393 40 1 3.7458 -3.2719 -0.0021 41 1 1.3253 -4.7175 1.8822 42 1 3.0210 -5.2382 2.0297 43 1 1.4697 -7.1214 2.4725 44 1 0.7426 -6.9010 0.8626 45 1 3.6677 -7.5733 1.4182 46 1 2.4330 -8.7151 0.8358 47 1 3.7976 -7.8454 -1.0431 48 1 2.1025 -7.3237 -1.1903 49 1 3.0228 -4.8763 -2.4866 50 1 6.5098 -5.1059 -5.3418 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085357727.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:11:49 Heat of formation + Delta-G solvation = -29.759568 kcal Electronic energy + Delta-G solvation = -30199.021567 eV Core-core repulsion = 26227.110456 eV Total energy + Delta-G solvation = -3971.911111 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -43.49380 -39.86085 -38.00057 -36.08846 -35.28930 -34.22027 -33.89313 -31.41010 -31.12587 -29.65734 -28.48392 -27.49502 -27.39821 -24.48568 -23.53300 -22.72190 -21.45524 -21.04083 -20.65783 -20.34972 -19.78024 -18.20239 -17.46317 -16.96895 -16.37159 -16.11713 -15.19985 -14.79203 -14.69892 -14.60602 -14.33432 -14.08373 -13.65999 -13.56043 -13.41903 -13.28958 -13.27354 -13.06222 -12.68394 -12.49568 -12.41018 -12.36280 -12.29317 -11.99880 -11.60994 -11.42538 -11.38031 -11.06123 -11.01492 -10.98565 -10.91321 -10.82425 -10.67801 -10.41869 -10.17091 -10.04119 -9.78895 -9.64888 -9.05647 -8.97494 -8.68076 -7.34884 -5.83636 -3.19653 0.80936 2.32750 2.34628 3.14432 3.25164 3.33560 3.38486 3.42059 3.74538 4.50486 4.53763 4.60627 4.70509 4.75872 4.84760 4.92412 5.00591 5.17210 5.32303 5.33775 5.37497 5.40122 5.42823 5.51135 5.53495 5.54528 5.61236 5.61606 5.63516 5.69853 5.79112 5.80693 5.85239 5.86974 5.91677 5.98221 5.99559 6.16855 6.25802 6.30659 6.33264 6.36738 6.40388 6.64350 6.76337 6.91506 7.43938 7.67315 7.91049 8.17413 8.35104 9.12808 9.85841 10.04863 11.34334 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.008830 B = 0.004376 C = 0.003401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3170.405039 B = 6397.664457 C = 8230.689756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.075 3.925 3 N -0.485 5.485 4 C 0.223 3.777 5 C -0.001 4.001 6 C -0.145 4.145 7 C -0.142 4.142 8 O -0.182 6.182 9 C -0.114 4.114 10 C 0.608 3.392 11 O -0.523 6.523 12 N -0.697 5.697 13 C 0.136 3.864 14 H 0.088 0.912 15 C -0.124 4.124 16 C -0.114 4.114 17 C -0.120 4.120 18 C -0.133 4.133 19 C 0.178 3.822 20 H 0.061 0.939 21 N -0.747 5.747 22 C -0.244 4.244 23 H 0.092 0.908 24 C 0.010 3.990 25 N -0.931 5.931 26 Si 0.878 3.122 27 H -0.286 1.286 28 H -0.290 1.290 29 H -0.277 1.277 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.095 0.905 33 H 0.103 0.897 34 H 0.074 0.926 35 H 0.062 0.938 36 H 0.069 0.931 37 H 0.059 0.941 38 H 0.073 0.927 39 H 0.069 0.931 40 H 0.410 0.590 41 H 0.064 0.936 42 H 0.064 0.936 43 H 0.060 0.940 44 H 0.062 0.938 45 H 0.060 0.940 46 H 0.057 0.943 47 H 0.072 0.928 48 H 0.056 0.944 49 H 0.361 0.639 50 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.586 10.750 13.763 18.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.049 4.049 3 N -0.215 5.215 4 C 0.018 3.982 5 C -0.021 4.021 6 C -0.202 4.202 7 C -0.200 4.200 8 O -0.069 6.069 9 C -0.169 4.169 10 C 0.393 3.607 11 O -0.402 6.402 12 N -0.345 5.345 13 C 0.032 3.968 14 H 0.106 0.894 15 C -0.163 4.163 16 C -0.152 4.152 17 C -0.158 4.158 18 C -0.173 4.173 19 C 0.068 3.932 20 H 0.079 0.921 21 N -0.389 5.389 22 C -0.374 4.374 23 H 0.109 0.891 24 C -0.186 4.186 25 N -0.578 5.578 26 Si 0.709 3.291 27 H -0.212 1.212 28 H -0.216 1.216 29 H -0.203 1.203 30 H 0.098 0.902 31 H 0.093 0.907 32 H 0.113 0.887 33 H 0.121 0.879 34 H 0.093 0.907 35 H 0.081 0.919 36 H 0.088 0.912 37 H 0.078 0.922 38 H 0.092 0.908 39 H 0.088 0.912 40 H 0.245 0.755 41 H 0.083 0.917 42 H 0.083 0.917 43 H 0.079 0.921 44 H 0.081 0.919 45 H 0.079 0.921 46 H 0.076 0.924 47 H 0.090 0.910 48 H 0.075 0.925 49 H 0.194 0.806 50 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -7.279 11.057 13.690 19.043 hybrid contribution -0.102 -0.035 -0.968 0.974 sum -7.381 11.022 12.722 18.380 Atomic orbital electron populations 1.20353 0.85395 1.04281 1.03458 1.22030 0.98253 0.86439 0.98193 1.70247 1.00264 1.30974 1.19976 1.26539 0.95623 0.79261 0.96811 1.19782 0.90636 0.93185 0.98488 1.21854 1.03377 0.99414 0.95594 1.21837 1.03423 0.99330 0.95398 1.84491 1.29742 1.23614 1.69015 1.22994 0.81313 0.96445 1.16155 1.16316 0.85888 0.81351 0.77168 1.90820 1.15708 1.81907 1.51785 1.45913 1.10108 1.06053 1.72470 1.21481 0.99635 0.79109 0.96621 0.89442 1.21872 1.01571 0.96642 0.96210 1.21481 0.98926 0.94235 1.00534 1.21585 0.98424 0.98655 0.97164 1.22178 1.01796 0.98368 0.94994 1.20447 0.94819 0.91198 0.86741 0.92121 1.42799 1.14650 1.70806 1.10664 1.19031 0.89676 1.32354 0.96343 0.89062 1.24621 0.96306 1.00813 0.96872 1.69693 1.21676 1.51983 1.14493 0.86647 0.82372 0.80015 0.80074 1.21247 1.21630 1.20332 0.90211 0.90666 0.88655 0.87915 0.90737 0.91923 0.91169 0.92197 0.90782 0.91156 0.75489 0.91705 0.91705 0.92132 0.91899 0.92137 0.92406 0.90976 0.92471 0.80570 0.93025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.98 9.87 36.00 0.36 -0.63 16 2 C 0.08 1.15 7.16 -82.47 -0.59 0.56 16 3 N -0.48 -7.09 11.26 -7.07 -0.08 -7.17 16 4 C 0.22 3.06 6.82 -12.80 -0.09 2.97 16 5 C 0.00 -0.01 3.39 -91.77 -0.31 -0.32 16 6 C -0.14 -1.29 9.18 37.16 0.34 -0.95 16 7 C -0.14 -1.10 9.18 37.16 0.34 -0.76 16 8 O -0.18 -2.84 10.57 4.44 0.05 -2.80 16 9 C -0.11 -1.85 7.18 -36.84 -0.26 -2.12 16 10 C 0.61 10.30 7.75 -12.84 -0.10 10.20 16 11 O -0.52 -9.47 14.46 5.20 0.08 -9.40 16 12 N -0.70 -11.35 4.91 -55.10 -0.27 -11.62 16 13 C 0.14 2.18 1.97 -67.93 -0.13 2.04 16 14 H 0.09 1.53 7.58 -51.93 -0.39 1.14 16 15 C -0.12 -1.64 5.50 -26.73 -0.15 -1.79 16 16 C -0.11 -1.36 5.92 -26.73 -0.16 -1.52 16 17 C -0.12 -1.54 5.92 -26.73 -0.16 -1.70 16 18 C -0.13 -2.17 5.50 -26.73 -0.15 -2.32 16 19 C 0.18 3.19 2.29 -67.93 -0.16 3.04 16 20 H 0.06 1.11 8.08 -51.93 -0.42 0.69 16 21 N -0.75 -16.90 4.76 -53.43 -0.25 -17.15 16 22 C -0.24 -6.59 10.41 -15.06 -0.16 -6.74 16 23 H 0.09 2.62 8.06 -52.49 -0.42 2.20 16 24 C 0.01 0.29 5.50 -17.43 -0.10 0.19 16 25 N -0.93 -28.64 13.97 55.49 0.78 -27.86 16 26 Si 0.88 22.33 27.74 -169.99 -4.71 17.62 16 27 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 28 H -0.29 -7.47 7.11 56.52 0.40 -7.06 16 29 H -0.28 -6.79 6.52 56.52 0.37 -6.43 16 30 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 31 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.09 1.30 6.48 -51.93 -0.34 0.97 16 33 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16 34 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 39 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.41 6.63 8.40 -40.82 -0.34 6.28 16 41 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 45 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 46 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 47 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 48 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 49 H 0.36 8.46 5.66 -40.82 -0.23 8.23 16 50 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 LS Contribution 402.90 15.07 6.07 6.07 Total: -1.00 -31.93 402.90 -8.32 -40.25 By element: Atomic # 1 Polarization: 20.40 SS G_CDS: -8.50 Total: 11.90 kcal Atomic # 6 Polarization: 1.62 SS G_CDS: -1.47 Total: 0.15 kcal Atomic # 7 Polarization: -63.97 SS G_CDS: 0.17 Total: -63.80 kcal Atomic # 8 Polarization: -12.32 SS G_CDS: 0.12 Total: -12.19 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -4.71 Total: 17.62 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -31.93 -8.32 -40.25 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085357727.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.492 kcal (2) G-P(sol) polarization free energy of solvation -31.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds