Wall clock time and date at job start Tue Mar 31 2020 20:11:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.33693 * 126.27388 * 2 1 4 4 C 1.30617 * 108.99564 * 180.25767 * 3 2 1 5 5 C 1.50697 * 125.42031 * 179.74746 * 4 3 2 6 6 C 1.53002 * 109.47280 * 300.01934 * 5 4 3 7 7 C 1.52998 * 109.47379 * 60.02357 * 5 4 3 8 8 O 1.33662 * 109.15358 * 359.76629 * 4 3 2 9 9 C 1.35341 * 107.68778 * 359.97438 * 8 4 3 10 10 C 1.46716 * 126.64676 * 179.97438 * 9 8 4 11 11 O 1.21684 * 120.00295 * 180.02562 * 10 9 8 12 12 N 1.34776 * 120.00036 * 0.02928 * 10 9 8 13 13 C 1.46506 * 120.00391 * 180.02562 * 12 10 9 14 14 H 1.09000 * 109.46872 * 34.99635 * 13 12 10 15 15 C 1.52999 * 109.46691 * 275.00006 * 13 12 10 16 16 C 1.53006 * 109.46626 * 179.97438 * 15 13 12 17 17 C 1.52997 * 109.47164 * 59.99702 * 16 15 13 18 18 C 1.53002 * 109.47415 * 300.00027 * 17 16 15 19 19 C 1.52996 * 109.46972 * 59.99860 * 18 17 16 20 20 H 1.09000 * 109.47054 * 60.00300 * 19 18 17 21 21 N 1.46500 * 109.46993 * 180.02562 * 19 18 17 22 22 C 1.36937 * 120.00054 * 275.00012 * 21 19 18 23 23 H 1.07996 * 119.99804 * 0.02562 * 22 21 19 24 24 C 1.38812 * 119.99902 * 179.97438 * 22 21 19 25 25 N 1.31623 * 119.99677 * 179.97438 * 24 22 21 26 26 Si 1.86796 * 120.00127 * 0.02562 * 24 22 21 27 27 H 1.48493 * 109.47451 * 89.99527 * 26 24 22 28 28 H 1.48509 * 109.46990 * 209.99620 * 26 24 22 29 29 H 1.48501 * 109.46950 * 329.99146 * 26 24 22 30 30 H 1.09003 * 109.47368 * 270.13420 * 1 2 3 31 31 H 1.09000 * 109.47812 * 30.13905 * 1 2 3 32 32 H 1.09005 * 109.47023 * 150.13404 * 1 2 3 33 33 H 1.08998 * 109.47188 * 180.02562 * 5 4 3 34 34 H 1.09003 * 109.47167 * 179.97438 * 6 5 4 35 35 H 1.09002 * 109.47086 * 300.00304 * 6 5 4 36 36 H 1.09002 * 109.46703 * 60.00688 * 6 5 4 37 37 H 1.08997 * 109.47260 * 59.99790 * 7 5 4 38 38 H 1.09003 * 109.47507 * 179.97438 * 7 5 4 39 39 H 1.09001 * 109.46971 * 299.99528 * 7 5 4 40 40 H 0.97001 * 120.00215 * 359.97438 * 12 10 9 41 41 H 1.08993 * 109.47839 * 59.99891 * 15 13 12 42 42 H 1.09000 * 109.47160 * 299.99453 * 15 13 12 43 43 H 1.09001 * 109.46998 * 179.97438 * 16 15 13 44 44 H 1.09000 * 109.47050 * 299.99699 * 16 15 13 45 45 H 1.09000 * 109.47140 * 60.00051 * 17 16 15 46 46 H 1.09001 * 109.47230 * 179.97438 * 17 16 15 47 47 H 1.08992 * 109.46974 * 180.02562 * 18 17 16 48 48 H 1.08996 * 109.46550 * 300.00288 * 18 17 16 49 49 H 0.96999 * 120.00261 * 95.00272 * 21 19 18 50 50 H 0.97001 * 119.99723 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2979 1.0778 0.0000 4 6 3.5452 0.6899 -0.0056 5 6 4.7439 1.6031 -0.0129 6 6 4.7061 2.4844 -1.2631 7 6 4.7190 2.4875 1.2354 8 8 3.5889 -0.6460 -0.0041 9 6 2.3136 -1.0992 0.0032 10 6 1.8827 -2.5016 0.0067 11 8 0.6966 -2.7737 0.0129 12 7 2.8004 -3.4887 0.0031 13 6 2.3701 -4.8891 0.0060 14 1 1.4560 -4.9895 -0.5791 15 6 2.1068 -5.3386 1.4446 16 6 1.6568 -6.8010 1.4476 17 6 2.7534 -7.6733 0.8332 18 6 3.0167 -7.2237 -0.6053 19 6 3.4667 -5.7614 -0.6083 20 1 4.3809 -5.6614 -0.0233 21 7 3.7182 -5.3307 -1.9858 22 6 4.9352 -5.5695 -2.5665 23 1 5.7094 -6.0757 -2.0090 24 6 5.1733 -5.1619 -3.8718 25 7 6.3432 -5.3910 -4.4297 26 14 3.8340 -4.2870 -4.8362 27 1 3.9460 -2.8219 -4.6214 28 1 3.9878 -4.5885 -6.2822 29 1 2.5034 -4.7551 -4.3717 30 1 -0.3634 0.0024 1.0277 31 1 -0.3635 0.8887 -0.5160 32 1 -0.3633 -0.8912 -0.5118 33 1 5.6556 1.0059 -0.0169 34 1 5.5729 3.1452 -1.2681 35 1 4.7238 1.8543 -2.1524 36 1 3.7943 3.0817 -1.2590 37 1 4.7459 1.8597 2.1260 38 1 5.5863 3.1477 1.2303 39 1 3.8072 3.0848 1.2393 40 1 3.7458 -3.2719 -0.0021 41 1 1.3253 -4.7175 1.8822 42 1 3.0210 -5.2382 2.0297 43 1 1.4697 -7.1214 2.4725 44 1 0.7426 -6.9010 0.8626 45 1 3.6677 -7.5733 1.4182 46 1 2.4330 -8.7151 0.8358 47 1 3.7976 -7.8454 -1.0431 48 1 2.1025 -7.3237 -1.1903 49 1 3.0228 -4.8763 -2.4866 50 1 6.5098 -5.1059 -5.3418 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085357727.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:11:48 Heat of formation + Delta-G solvation = -52.060063 kcal Electronic energy + Delta-G solvation = -30199.988589 eV Core-core repulsion = 26227.110456 eV Total energy + Delta-G solvation = -3972.878133 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -44.62721 -41.17579 -39.32986 -36.97521 -36.35277 -35.97434 -35.19917 -33.37742 -32.20573 -30.86645 -29.97426 -28.58206 -28.15002 -25.59686 -25.28935 -23.88626 -22.71435 -22.44377 -21.77658 -21.42323 -21.03069 -19.90168 -19.02116 -18.12634 -17.55954 -17.27004 -16.85097 -16.25560 -15.96066 -15.69654 -15.52288 -15.16013 -15.08531 -14.84492 -14.72908 -14.51199 -14.34900 -14.22044 -14.11325 -13.75690 -13.70549 -13.37465 -13.12703 -13.11538 -13.01163 -12.76307 -12.45013 -12.36688 -12.26881 -12.19931 -12.12414 -12.02146 -11.87819 -11.85920 -11.77440 -11.50452 -11.35456 -11.12300 -10.95329 -10.30353 -9.87339 -9.35568 -8.06166 -5.37845 -0.36848 1.20877 1.23653 1.29156 1.31138 1.36774 1.87549 2.02715 2.40994 2.72173 3.25700 3.39251 3.52017 3.54628 3.70406 3.88054 3.98834 4.02512 4.09299 4.14334 4.21366 4.34970 4.36881 4.38564 4.42360 4.54235 4.63283 4.63615 4.72002 4.74974 4.76002 4.85828 4.88572 4.91813 4.95206 5.01472 5.04915 5.17373 5.21575 5.25957 5.26053 5.26828 5.33939 5.39975 5.47668 5.59077 5.75114 6.18044 6.20163 6.46381 6.86747 7.02830 7.78866 7.96486 9.15202 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.008830 B = 0.004376 C = 0.003401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3170.405039 B = 6397.664457 C = 8230.689756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.076 3.924 3 N -0.497 5.497 4 C 0.229 3.771 5 C -0.006 4.006 6 C -0.141 4.141 7 C -0.136 4.136 8 O -0.195 6.195 9 C -0.145 4.145 10 C 0.608 3.392 11 O -0.540 6.540 12 N -0.698 5.698 13 C 0.144 3.856 14 H 0.073 0.927 15 C -0.116 4.116 16 C -0.109 4.109 17 C -0.112 4.112 18 C -0.128 4.128 19 C 0.175 3.825 20 H 0.059 0.941 21 N -0.750 5.750 22 C -0.217 4.217 23 H 0.067 0.933 24 C -0.051 4.051 25 N -0.977 5.977 26 Si 0.937 3.063 27 H -0.288 1.288 28 H -0.294 1.294 29 H -0.264 1.264 30 H 0.095 0.905 31 H 0.090 0.910 32 H 0.083 0.917 33 H 0.114 0.886 34 H 0.103 0.897 35 H 0.044 0.956 36 H 0.064 0.936 37 H 0.056 0.944 38 H 0.101 0.899 39 H 0.062 0.938 40 H 0.409 0.591 41 H 0.065 0.935 42 H 0.075 0.925 43 H 0.088 0.912 44 H 0.062 0.938 45 H 0.067 0.933 46 H 0.076 0.924 47 H 0.048 0.952 48 H 0.053 0.947 49 H 0.359 0.641 50 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.626 11.691 15.539 20.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.049 4.049 3 N -0.227 5.227 4 C 0.024 3.976 5 C -0.026 4.026 6 C -0.199 4.199 7 C -0.193 4.193 8 O -0.082 6.082 9 C -0.199 4.199 10 C 0.394 3.606 11 O -0.420 6.420 12 N -0.346 5.346 13 C 0.039 3.961 14 H 0.091 0.909 15 C -0.155 4.155 16 C -0.147 4.147 17 C -0.150 4.150 18 C -0.168 4.168 19 C 0.067 3.933 20 H 0.077 0.923 21 N -0.392 5.392 22 C -0.348 4.348 23 H 0.085 0.915 24 C -0.244 4.244 25 N -0.628 5.628 26 Si 0.766 3.234 27 H -0.215 1.215 28 H -0.221 1.221 29 H -0.189 1.189 30 H 0.113 0.887 31 H 0.109 0.891 32 H 0.102 0.898 33 H 0.132 0.868 34 H 0.122 0.878 35 H 0.064 0.936 36 H 0.083 0.917 37 H 0.075 0.925 38 H 0.120 0.880 39 H 0.082 0.918 40 H 0.244 0.756 41 H 0.083 0.917 42 H 0.093 0.907 43 H 0.106 0.894 44 H 0.080 0.920 45 H 0.086 0.914 46 H 0.094 0.906 47 H 0.067 0.933 48 H 0.071 0.929 49 H 0.191 0.809 50 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -8.362 11.985 15.517 21.315 hybrid contribution 0.276 -0.291 -1.436 1.491 sum -8.086 11.694 14.081 20.010 Atomic orbital electron populations 1.20408 0.83864 1.04423 1.04482 1.22498 0.99385 0.86326 0.96654 1.70302 1.00649 1.30716 1.20990 1.27565 0.96670 0.78980 0.94432 1.20156 0.89381 0.93090 0.99924 1.21859 1.04491 0.99229 0.94290 1.21826 1.04372 0.99097 0.94025 1.84483 1.29621 1.24590 1.69542 1.22915 0.81884 0.96408 1.18721 1.16386 0.85697 0.81730 0.76797 1.90798 1.16179 1.82325 1.52693 1.45936 1.10017 1.06174 1.72467 1.21407 0.97799 0.78645 0.98235 0.90854 1.21828 1.02136 0.97596 0.93926 1.21478 0.98285 0.92803 1.02090 1.21529 0.99288 0.99818 0.94343 1.22054 1.00650 0.96421 0.97712 1.20673 0.95681 0.92707 0.84264 0.92329 1.42835 1.13040 1.70929 1.12424 1.19000 0.90390 1.29627 0.95790 0.91470 1.25227 0.98172 1.02772 0.98179 1.69834 1.23773 1.54440 1.14791 0.85687 0.80602 0.78649 0.78422 1.21479 1.22085 1.18921 0.88652 0.89089 0.89798 0.86810 0.87829 0.93631 0.91702 0.92457 0.87998 0.91840 0.75588 0.91652 0.90669 0.89366 0.91957 0.91410 0.90562 0.93282 0.92864 0.80877 0.93431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.82 9.87 71.23 0.70 -1.12 16 2 C 0.08 2.27 7.16 41.83 0.30 2.57 16 3 N -0.50 -14.14 11.26 -291.07 -3.28 -17.42 16 4 C 0.23 6.10 6.82 88.29 0.60 6.70 16 5 C -0.01 -0.11 3.39 -11.54 -0.04 -0.15 16 6 C -0.14 -2.27 9.18 71.98 0.66 -1.61 16 7 C -0.14 -1.80 9.18 71.98 0.66 -1.14 16 8 O -0.20 -6.07 10.57 -7.04 -0.07 -6.14 16 9 C -0.14 -4.70 7.18 24.04 0.17 -4.53 16 10 C 0.61 20.53 7.75 86.46 0.67 21.20 16 11 O -0.54 -19.38 14.46 -4.30 -0.06 -19.44 16 12 N -0.70 -22.55 4.91 -446.47 -2.19 -24.74 16 13 C 0.14 4.47 1.97 44.99 0.09 4.56 16 14 H 0.07 2.52 7.58 -2.39 -0.02 2.50 16 15 C -0.12 -2.82 5.50 30.60 0.17 -2.65 16 16 C -0.11 -2.26 5.92 30.60 0.18 -2.08 16 17 C -0.11 -2.58 5.92 30.59 0.18 -2.40 16 18 C -0.13 -4.08 5.50 30.59 0.17 -3.91 16 19 C 0.17 6.20 2.29 44.99 0.10 6.31 16 20 H 0.06 2.12 8.08 -2.39 -0.02 2.10 16 21 N -0.75 -34.00 4.76 -322.95 -1.54 -35.54 16 22 C -0.22 -11.90 10.41 84.03 0.87 -11.02 16 23 H 0.07 3.97 8.06 -2.91 -0.02 3.95 16 24 C -0.05 -3.00 5.50 84.86 0.47 -2.53 16 25 N -0.98 -61.67 13.97 21.65 0.30 -61.36 16 26 Si 0.94 46.84 27.74 68.60 1.90 48.74 16 27 H -0.29 -14.38 7.11 99.48 0.71 -13.67 16 28 H -0.29 -14.82 7.11 99.48 0.71 -14.12 16 29 H -0.26 -12.43 6.52 99.48 0.65 -11.79 16 30 H 0.10 2.00 8.14 -2.39 -0.02 1.99 16 31 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 32 H 0.08 2.26 6.48 -2.38 -0.02 2.24 16 33 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.06 1.11 8.14 -2.39 -0.02 1.10 16 37 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 38 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 39 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.41 13.27 8.40 -92.71 -0.78 12.49 16 41 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 42 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 43 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 44 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 45 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 46 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 47 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 48 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 49 H 0.36 16.68 5.66 -92.71 -0.52 16.15 16 50 H 0.26 15.57 8.31 -92.71 -0.77 14.80 16 Total: -1.00 -70.05 402.90 0.61 -69.44 By element: Atomic # 1 Polarization: 38.68 SS G_CDS: -0.42 Total: 38.27 kcal Atomic # 6 Polarization: 2.23 SS G_CDS: 5.96 Total: 8.19 kcal Atomic # 7 Polarization: -132.36 SS G_CDS: -6.70 Total: -139.06 kcal Atomic # 8 Polarization: -25.45 SS G_CDS: -0.14 Total: -25.58 kcal Atomic # 14 Polarization: 46.84 SS G_CDS: 1.90 Total: 48.74 kcal Total: -70.05 0.61 -69.44 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085357727.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.385 kcal (2) G-P(sol) polarization free energy of solvation -70.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds