Wall clock time and date at job start Tue Mar 31 2020 18:25:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30013 * 127.33264 * 2 1 4 4 O 1.20663 * 112.30205 * 180.02562 * 3 2 1 5 5 C 1.33498 * 113.15301 * 359.72681 * 4 3 2 6 6 C 1.50697 * 126.82650 * 180.30926 * 5 4 3 7 7 C 1.37353 * 106.34025 * 0.44302 * 5 4 3 8 8 C 1.47400 * 128.56330 * 179.85706 * 7 5 4 9 9 O 1.21612 * 120.00233 * 269.68121 * 8 7 5 10 10 N 1.34779 * 120.00047 * 89.68161 * 8 7 5 11 11 C 1.46499 * 120.00142 * 180.02562 * 10 8 7 12 12 H 1.08996 * 108.44685 * 327.31253 * 11 10 8 13 13 C 1.47099 * 108.50975 * 84.99852 * 11 10 8 14 14 C 1.54874 * 110.17656 * 184.13931 * 13 11 10 15 15 N 1.44660 * 109.55915 * 288.47291 * 14 13 11 16 16 C 1.36938 * 118.81104 * 270.94577 * 15 14 13 17 17 H 1.08002 * 119.99991 * 27.26835 * 16 15 14 18 18 C 1.38816 * 119.99761 * 207.26064 * 16 15 14 19 19 N 1.31610 * 120.00038 * 16.35363 * 18 16 15 20 20 Si 1.86800 * 119.99818 * 196.34955 * 18 16 15 21 21 H 1.48505 * 109.46968 * 60.00178 * 20 18 16 22 22 H 1.48495 * 109.47336 * 180.02562 * 20 18 16 23 23 H 1.48508 * 109.47119 * 300.00467 * 20 18 16 24 24 C 1.47605 * 122.54282 * 90.96588 * 15 14 13 25 25 C 1.53951 * 112.13797 * 317.85152 * 24 15 14 26 26 C 1.53003 * 109.36626 * 199.24669 * 25 24 15 27 27 C 1.52993 * 109.36681 * 79.62761 * 25 24 15 28 28 C 1.50886 * 110.09387 * 319.43892 * 25 24 15 29 29 H 1.09000 * 109.46842 * 269.95020 * 1 2 3 30 30 H 1.08997 * 109.47032 * 29.95226 * 1 2 3 31 31 H 1.08998 * 109.47034 * 149.95006 * 1 2 3 32 32 H 1.09000 * 109.46846 * 270.16248 * 6 5 4 33 33 H 1.08999 * 109.47187 * 30.16439 * 6 5 4 34 34 H 1.09006 * 109.47035 * 150.16696 * 6 5 4 35 35 H 0.97000 * 119.99631 * 359.97438 * 10 8 7 36 36 H 1.08994 * 109.33016 * 304.30988 * 13 11 10 37 37 H 1.08998 * 109.32723 * 63.96884 * 13 11 10 38 38 H 1.08998 * 109.44552 * 48.69686 * 14 13 11 39 39 H 1.08999 * 109.44393 * 168.61164 * 14 13 11 40 40 H 0.96996 * 120.00331 * 180.02562 * 19 18 16 41 41 H 1.09001 * 108.94425 * 197.17297 * 24 15 14 42 42 H 1.08997 * 108.94845 * 78.53296 * 24 15 14 43 43 H 1.08997 * 109.46989 * 180.63657 * 26 25 24 44 44 H 1.08996 * 109.46630 * 300.63900 * 26 25 24 45 45 H 1.09001 * 109.46708 * 60.63393 * 26 25 24 46 46 H 1.08998 * 109.47550 * 300.27228 * 27 25 24 47 47 H 1.08997 * 109.47298 * 60.27117 * 27 25 24 48 48 H 1.09000 * 109.47394 * 180.27206 * 27 25 24 49 49 H 1.09000 * 109.49114 * 331.92390 * 28 25 24 50 50 H 1.09005 * 109.50548 * 211.86687 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2955 1.0338 0.0000 4 8 3.4608 0.7209 -0.0005 5 6 3.6495 -0.6007 0.0049 6 6 4.9712 -1.3245 0.0125 7 6 2.3993 -1.1695 -0.0008 8 6 2.0402 -2.5991 -0.0012 9 8 1.8917 -3.1885 -1.0546 10 7 1.8764 -3.2532 1.1658 11 6 1.5201 -4.6742 1.1654 12 1 0.8945 -4.8726 0.2952 13 6 2.7544 -5.4651 1.0434 14 6 2.4145 -6.9721 0.9344 15 7 1.9464 -7.4568 2.2145 16 6 2.8615 -7.9361 3.1134 17 1 3.8788 -7.5741 3.0934 18 6 2.4814 -8.8870 4.0505 19 7 1.3636 -9.5622 3.8869 20 14 3.5566 -9.2085 5.5439 21 1 3.6913 -7.9590 6.3350 22 1 2.9341 -10.2625 6.3845 23 1 4.8997 -9.6599 5.0989 24 6 0.5190 -7.4556 2.5902 25 6 -0.1910 -6.1564 2.1680 26 6 -1.4815 -5.9984 2.9745 27 6 -0.5320 -6.2258 0.6782 28 6 0.7059 -4.9698 2.4212 29 1 -0.3633 -0.0009 1.0277 30 1 -0.3633 0.8904 -0.5131 31 1 -0.3633 -0.8895 -0.5146 32 1 5.2951 -1.5001 -1.0134 33 1 5.7147 -0.7178 0.5295 34 1 4.8598 -2.2791 0.5267 35 1 1.9953 -2.7832 2.0059 36 1 3.2967 -5.1521 0.1512 37 1 3.3779 -5.2985 1.9217 38 1 1.6385 -7.1157 0.1826 39 1 3.3076 -7.5254 0.6438 40 1 1.0978 -10.2264 4.5418 41 1 0.4376 -7.5681 3.6714 42 1 0.0258 -8.3006 2.1098 43 1 -1.9913 -5.0847 2.6688 44 1 -2.1306 -6.8549 2.7927 45 1 -1.2419 -5.9429 4.0363 46 1 0.3843 -6.3490 0.1010 47 1 -1.1929 -7.0731 0.4958 48 1 -1.0305 -5.3047 0.3762 49 1 1.3804 -5.1934 3.2478 50 1 0.0976 -4.1010 2.6731 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089315919.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:35 Heat of formation + Delta-G solvation = 50.539633 kcal Electronic energy + Delta-G solvation = -30870.237914 eV Core-core repulsion = 26901.808837 eV Total energy + Delta-G solvation = -3968.429077 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -45.03660 -40.19985 -38.47854 -34.88353 -34.72963 -34.25115 -33.77947 -32.03522 -30.18293 -28.99137 -28.21514 -27.46394 -26.89860 -25.48538 -24.82471 -23.88694 -21.97499 -20.84753 -20.10162 -19.71234 -18.39455 -17.96975 -17.51608 -16.70580 -16.45358 -16.06967 -15.26744 -14.92316 -14.52033 -14.25223 -13.90183 -13.85905 -13.74373 -13.55876 -13.39910 -13.26631 -12.98178 -12.94062 -12.72498 -12.65263 -12.60732 -12.31717 -11.81482 -11.53904 -11.46106 -11.30358 -11.15031 -10.80602 -10.78966 -10.45900 -10.43994 -10.36046 -10.12914 -10.07325 -9.87433 -9.70516 -9.56015 -9.48519 -9.30869 -8.85255 -8.40616 -6.66284 -5.79549 -3.23432 1.12620 1.72852 2.42580 2.66912 3.31469 3.35788 3.42199 3.42684 3.93649 4.05562 4.48074 4.69617 4.74665 4.99857 5.10703 5.11630 5.20784 5.23501 5.26588 5.34981 5.36191 5.44245 5.49122 5.57344 5.64909 5.65563 5.80226 5.83700 5.89686 6.05006 6.18068 6.20828 6.22775 6.29610 6.32789 6.38282 6.57287 6.61847 6.72684 6.74443 6.82543 6.86736 6.95500 7.12868 7.41576 7.57053 7.70781 7.81174 8.02688 8.21746 8.46051 9.23006 9.89626 10.35864 11.27497 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.015498 B = 0.003328 C = 0.003011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1806.265273 B = 8410.846491 C = 9295.565204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.054 3.946 3 N -0.359 5.359 4 O 0.093 5.907 5 C 0.017 3.983 6 C -0.080 4.080 7 C -0.249 4.249 8 C 0.595 3.405 9 O -0.528 6.528 10 N -0.713 5.713 11 C 0.140 3.860 12 H 0.098 0.902 13 C -0.155 4.155 14 C 0.153 3.847 15 N -0.588 5.588 16 C -0.260 4.260 17 H 0.063 0.937 18 C 0.008 3.992 19 N -0.901 5.901 20 Si 0.898 3.102 21 H -0.285 1.285 22 H -0.291 1.291 23 H -0.283 1.283 24 C 0.192 3.808 25 C -0.089 4.089 26 C -0.131 4.131 27 C -0.155 4.155 28 C -0.101 4.101 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.095 0.905 33 H 0.090 0.910 34 H 0.096 0.904 35 H 0.396 0.604 36 H 0.052 0.948 37 H 0.062 0.938 38 H 0.046 0.954 39 H 0.048 0.952 40 H 0.254 0.746 41 H 0.073 0.927 42 H 0.027 0.973 43 H 0.043 0.957 44 H 0.053 0.947 45 H 0.052 0.948 46 H 0.075 0.925 47 H 0.049 0.951 48 H 0.041 0.959 49 H 0.079 0.921 50 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.307 16.395 -5.116 17.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.108 4.108 3 N -0.066 5.066 4 O 0.032 5.968 5 C -0.046 4.046 6 C -0.137 4.137 7 C -0.257 4.257 8 C 0.379 3.621 9 O -0.404 6.404 10 N -0.362 5.362 11 C 0.039 3.961 12 H 0.116 0.884 13 C -0.196 4.196 14 C 0.024 3.976 15 N -0.308 5.308 16 C -0.390 4.390 17 H 0.081 0.919 18 C -0.191 4.191 19 N -0.545 5.545 20 Si 0.728 3.272 21 H -0.211 1.211 22 H -0.217 1.217 23 H -0.209 1.209 24 C 0.067 3.933 25 C -0.091 4.091 26 C -0.188 4.188 27 C -0.212 4.212 28 C -0.139 4.139 29 H 0.104 0.896 30 H 0.100 0.900 31 H 0.104 0.896 32 H 0.114 0.886 33 H 0.109 0.891 34 H 0.114 0.886 35 H 0.230 0.770 36 H 0.070 0.930 37 H 0.080 0.920 38 H 0.063 0.937 39 H 0.066 0.934 40 H 0.064 0.936 41 H 0.091 0.909 42 H 0.045 0.955 43 H 0.062 0.938 44 H 0.072 0.928 45 H 0.071 0.929 46 H 0.093 0.907 47 H 0.068 0.932 48 H 0.060 0.940 49 H 0.098 0.902 50 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.702 17.094 -5.775 18.057 hybrid contribution 0.530 -0.651 1.310 1.556 sum -0.171 16.443 -4.465 17.039 Atomic orbital electron populations 1.20229 0.85187 1.04303 1.03822 1.24755 0.98571 0.86592 1.00917 1.73600 0.89171 1.23415 1.20393 1.84520 1.21477 1.22683 1.68101 1.24645 0.97503 0.83638 0.98804 1.20486 0.88911 0.99388 1.04892 1.22074 0.92765 0.95689 1.15139 1.16856 0.77265 0.83535 0.84486 1.90823 1.50409 1.67915 1.31270 1.46520 1.69689 1.12487 1.07541 1.20487 0.97363 0.77273 1.01007 0.88401 1.21890 0.96837 0.99899 1.00990 1.20816 0.97799 0.90270 0.88670 1.43639 1.03075 1.71772 1.12340 1.19128 0.93038 1.16872 1.09936 0.91879 1.25016 0.97583 0.96016 1.00515 1.70050 1.24408 1.24785 1.35289 0.86447 0.80062 0.77441 0.83252 1.21136 1.21703 1.20935 1.21064 0.82366 0.89708 1.00194 1.20922 0.95069 0.98141 0.94960 1.21789 0.96758 1.00464 0.99824 1.22391 1.01811 1.00230 0.96737 1.21296 0.97966 0.97162 0.97477 0.89605 0.89997 0.89643 0.88611 0.89111 0.88562 0.77048 0.92971 0.91971 0.93651 0.93401 0.93633 0.90872 0.95539 0.93819 0.92827 0.92873 0.90676 0.93174 0.94003 0.90230 0.92966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.72 10.49 36.01 0.38 -0.35 16 2 C 0.05 0.65 7.59 -79.77 -0.61 0.04 16 3 N -0.36 -4.55 12.01 34.78 0.42 -4.14 16 4 O 0.09 1.09 11.06 18.64 0.21 1.30 16 5 C 0.02 0.19 7.55 -34.63 -0.26 -0.07 16 6 C -0.08 -0.60 10.33 36.00 0.37 -0.23 16 7 C -0.25 -3.14 6.24 -102.90 -0.64 -3.78 16 8 C 0.60 8.53 7.45 -12.53 -0.09 8.44 16 9 O -0.53 -9.47 16.61 5.27 0.09 -9.38 16 10 N -0.71 -9.43 4.88 -57.91 -0.28 -9.72 16 11 C 0.14 2.18 1.79 -70.99 -0.13 2.06 16 12 H 0.10 1.65 3.94 -51.93 -0.20 1.45 16 13 C -0.15 -2.66 5.20 -28.58 -0.15 -2.80 16 14 C 0.15 3.06 5.58 -4.04 -0.02 3.04 16 15 N -0.59 -13.55 2.27 -172.02 -0.39 -13.94 16 16 C -0.26 -6.71 9.44 -15.06 -0.14 -6.85 16 17 H 0.06 1.62 7.88 -52.49 -0.41 1.20 16 18 C 0.01 0.20 4.84 -17.43 -0.08 0.12 16 19 N -0.90 -25.07 11.11 55.49 0.62 -24.46 16 20 Si 0.90 20.95 29.58 -169.99 -5.03 15.92 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 22 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 23 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 24 C 0.19 4.23 3.56 -2.94 -0.01 4.22 16 25 C -0.09 -1.53 0.75 -155.08 -0.12 -1.64 16 26 C -0.13 -1.99 8.14 37.16 0.30 -1.69 16 27 C -0.16 -2.51 6.75 37.15 0.25 -2.26 16 28 C -0.10 -1.60 4.39 -28.02 -0.12 -1.73 16 29 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.10 0.77 8.11 -51.93 -0.42 0.35 16 35 H 0.40 4.45 8.60 -40.82 -0.35 4.10 16 36 H 0.05 0.88 7.95 -51.93 -0.41 0.47 16 37 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.05 0.88 5.20 -51.93 -0.27 0.61 16 39 H 0.05 0.99 7.99 -51.93 -0.41 0.58 16 40 H 0.25 6.91 8.31 -40.82 -0.34 6.57 16 41 H 0.07 1.82 6.23 -51.93 -0.32 1.50 16 42 H 0.03 0.65 7.86 -51.93 -0.41 0.25 16 43 H 0.04 0.58 8.09 -51.93 -0.42 0.16 16 44 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 45 H 0.05 0.82 8.13 -51.93 -0.42 0.40 16 46 H 0.07 1.29 3.15 -51.93 -0.16 1.13 16 47 H 0.05 0.80 8.13 -51.93 -0.42 0.38 16 48 H 0.04 0.62 7.90 -51.93 -0.41 0.21 16 49 H 0.08 1.45 7.48 -51.93 -0.39 1.06 16 50 H 0.05 0.73 7.64 -51.93 -0.40 0.33 16 LS Contribution 388.54 15.07 5.86 5.86 Total: -1.00 -30.37 388.54 -7.53 -37.90 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: -7.94 Total: 4.14 kcal Atomic # 6 Polarization: -2.41 SS G_CDS: -1.07 Total: -3.48 kcal Atomic # 7 Polarization: -52.61 SS G_CDS: 0.36 Total: -52.25 kcal Atomic # 8 Polarization: -8.37 SS G_CDS: 0.29 Total: -8.08 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.03 Total: 15.92 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -30.37 -7.53 -37.90 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089315919.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.440 kcal (2) G-P(sol) polarization free energy of solvation -30.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.901 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds