Wall clock time and date at job start Tue Mar 31 2020 18:25:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30013 * 127.33264 * 2 1 4 4 O 1.20663 * 112.30205 * 180.02562 * 3 2 1 5 5 C 1.33498 * 113.15301 * 359.72681 * 4 3 2 6 6 C 1.50697 * 126.82650 * 180.30926 * 5 4 3 7 7 C 1.37353 * 106.34025 * 0.44302 * 5 4 3 8 8 C 1.47400 * 128.56330 * 179.85706 * 7 5 4 9 9 O 1.21612 * 120.00233 * 269.68121 * 8 7 5 10 10 N 1.34779 * 120.00047 * 89.68161 * 8 7 5 11 11 C 1.46499 * 120.00142 * 180.02562 * 10 8 7 12 12 H 1.08996 * 108.44685 * 327.31253 * 11 10 8 13 13 C 1.47099 * 108.50975 * 84.99852 * 11 10 8 14 14 C 1.54874 * 110.17656 * 184.13931 * 13 11 10 15 15 N 1.44660 * 109.55915 * 288.47291 * 14 13 11 16 16 C 1.36938 * 118.81104 * 270.94577 * 15 14 13 17 17 H 1.08002 * 119.99991 * 27.26835 * 16 15 14 18 18 C 1.38816 * 119.99761 * 207.26064 * 16 15 14 19 19 N 1.31610 * 120.00038 * 16.35363 * 18 16 15 20 20 Si 1.86800 * 119.99818 * 196.34955 * 18 16 15 21 21 H 1.48505 * 109.46968 * 60.00178 * 20 18 16 22 22 H 1.48495 * 109.47336 * 180.02562 * 20 18 16 23 23 H 1.48508 * 109.47119 * 300.00467 * 20 18 16 24 24 C 1.47605 * 122.54282 * 90.96588 * 15 14 13 25 25 C 1.53951 * 112.13797 * 317.85152 * 24 15 14 26 26 C 1.53003 * 109.36626 * 199.24669 * 25 24 15 27 27 C 1.52993 * 109.36681 * 79.62761 * 25 24 15 28 28 C 1.50886 * 110.09387 * 319.43892 * 25 24 15 29 29 H 1.09000 * 109.46842 * 269.95020 * 1 2 3 30 30 H 1.08997 * 109.47032 * 29.95226 * 1 2 3 31 31 H 1.08998 * 109.47034 * 149.95006 * 1 2 3 32 32 H 1.09000 * 109.46846 * 270.16248 * 6 5 4 33 33 H 1.08999 * 109.47187 * 30.16439 * 6 5 4 34 34 H 1.09006 * 109.47035 * 150.16696 * 6 5 4 35 35 H 0.97000 * 119.99631 * 359.97438 * 10 8 7 36 36 H 1.08994 * 109.33016 * 304.30988 * 13 11 10 37 37 H 1.08998 * 109.32723 * 63.96884 * 13 11 10 38 38 H 1.08998 * 109.44552 * 48.69686 * 14 13 11 39 39 H 1.08999 * 109.44393 * 168.61164 * 14 13 11 40 40 H 0.96996 * 120.00331 * 180.02562 * 19 18 16 41 41 H 1.09001 * 108.94425 * 197.17297 * 24 15 14 42 42 H 1.08997 * 108.94845 * 78.53296 * 24 15 14 43 43 H 1.08997 * 109.46989 * 180.63657 * 26 25 24 44 44 H 1.08996 * 109.46630 * 300.63900 * 26 25 24 45 45 H 1.09001 * 109.46708 * 60.63393 * 26 25 24 46 46 H 1.08998 * 109.47550 * 300.27228 * 27 25 24 47 47 H 1.08997 * 109.47298 * 60.27117 * 27 25 24 48 48 H 1.09000 * 109.47394 * 180.27206 * 27 25 24 49 49 H 1.09000 * 109.49114 * 331.92390 * 28 25 24 50 50 H 1.09005 * 109.50548 * 211.86687 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2955 1.0338 0.0000 4 8 3.4608 0.7209 -0.0005 5 6 3.6495 -0.6007 0.0049 6 6 4.9712 -1.3245 0.0125 7 6 2.3993 -1.1695 -0.0008 8 6 2.0402 -2.5991 -0.0012 9 8 1.8917 -3.1885 -1.0546 10 7 1.8764 -3.2532 1.1658 11 6 1.5201 -4.6742 1.1654 12 1 0.8945 -4.8726 0.2952 13 6 2.7544 -5.4651 1.0434 14 6 2.4145 -6.9721 0.9344 15 7 1.9464 -7.4568 2.2145 16 6 2.8615 -7.9361 3.1134 17 1 3.8788 -7.5741 3.0934 18 6 2.4814 -8.8870 4.0505 19 7 1.3636 -9.5622 3.8869 20 14 3.5566 -9.2085 5.5439 21 1 3.6913 -7.9590 6.3350 22 1 2.9341 -10.2625 6.3845 23 1 4.8997 -9.6599 5.0989 24 6 0.5190 -7.4556 2.5902 25 6 -0.1910 -6.1564 2.1680 26 6 -1.4815 -5.9984 2.9745 27 6 -0.5320 -6.2258 0.6782 28 6 0.7059 -4.9698 2.4212 29 1 -0.3633 -0.0009 1.0277 30 1 -0.3633 0.8904 -0.5131 31 1 -0.3633 -0.8895 -0.5146 32 1 5.2951 -1.5001 -1.0134 33 1 5.7147 -0.7178 0.5295 34 1 4.8598 -2.2791 0.5267 35 1 1.9953 -2.7832 2.0059 36 1 3.2967 -5.1521 0.1512 37 1 3.3779 -5.2985 1.9217 38 1 1.6385 -7.1157 0.1826 39 1 3.3076 -7.5254 0.6438 40 1 1.0978 -10.2264 4.5418 41 1 0.4376 -7.5681 3.6714 42 1 0.0258 -8.3006 2.1098 43 1 -1.9913 -5.0847 2.6688 44 1 -2.1306 -6.8549 2.7927 45 1 -1.2419 -5.9429 4.0363 46 1 0.3843 -6.3490 0.1010 47 1 -1.1929 -7.0731 0.4958 48 1 -1.0305 -5.3047 0.3762 49 1 1.3804 -5.1934 3.2478 50 1 0.0976 -4.1010 2.6731 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001089315919.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:34 Heat of formation + Delta-G solvation = 33.090473 kcal Electronic energy + Delta-G solvation = -30870.994566 eV Core-core repulsion = 26901.808837 eV Total energy + Delta-G solvation = -3969.185729 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -45.92555 -41.50746 -39.83283 -36.39430 -35.77821 -35.62227 -34.61454 -33.70014 -31.77269 -29.78213 -29.19442 -28.67992 -28.20573 -27.32718 -26.03215 -25.34762 -23.40979 -21.95990 -21.25423 -21.02995 -19.64804 -18.91712 -18.69691 -18.49726 -17.59095 -17.27385 -16.90557 -16.05071 -15.93870 -15.75347 -15.30672 -15.11969 -14.89466 -14.50601 -14.39367 -14.21785 -14.17755 -14.05658 -14.01609 -13.79426 -13.56961 -13.42426 -13.30377 -12.98986 -12.96700 -12.83323 -12.58497 -12.30053 -12.18068 -12.11754 -12.01897 -11.80904 -11.61525 -11.58686 -11.14318 -11.04164 -10.95076 -10.77529 -10.43178 -10.41498 -10.07984 -8.59170 -7.80593 -5.26726 0.26591 0.83481 1.33056 1.49023 1.50246 1.56710 1.77428 2.27817 2.54905 3.09439 3.23652 3.32221 3.69486 3.71738 3.82477 3.91307 4.06058 4.15139 4.22810 4.24502 4.43482 4.45301 4.50623 4.56310 4.57824 4.63309 4.73920 4.76219 4.76866 4.83428 4.86369 4.87928 4.99802 5.05372 5.05750 5.08166 5.16236 5.21260 5.26130 5.30980 5.42959 5.49536 5.55695 5.60251 5.70525 5.76282 5.90010 6.45114 6.48472 7.11853 7.16078 7.24137 8.00315 8.40158 9.23706 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.015498 B = 0.003328 C = 0.003011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1806.265273 B = 8410.846491 C = 9295.565204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.053 3.947 3 N -0.377 5.377 4 O 0.090 5.910 5 C 0.034 3.966 6 C -0.082 4.082 7 C -0.276 4.276 8 C 0.606 3.394 9 O -0.565 6.565 10 N -0.700 5.700 11 C 0.148 3.852 12 H 0.092 0.908 13 C -0.136 4.136 14 C 0.149 3.851 15 N -0.598 5.598 16 C -0.263 4.263 17 H 0.063 0.937 18 C -0.043 4.043 19 N -0.932 5.932 20 Si 0.958 3.042 21 H -0.278 1.278 22 H -0.298 1.298 23 H -0.279 1.279 24 C 0.206 3.794 25 C -0.083 4.083 26 C -0.127 4.127 27 C -0.148 4.148 28 C -0.092 4.092 29 H 0.103 0.897 30 H 0.092 0.908 31 H 0.082 0.918 32 H 0.106 0.894 33 H 0.117 0.883 34 H 0.093 0.907 35 H 0.409 0.591 36 H 0.057 0.943 37 H 0.054 0.946 38 H 0.052 0.948 39 H 0.035 0.965 40 H 0.248 0.752 41 H 0.040 0.960 42 H -0.010 1.010 43 H 0.074 0.926 44 H 0.048 0.952 45 H 0.047 0.953 46 H 0.063 0.937 47 H 0.046 0.954 48 H 0.064 0.936 49 H 0.056 0.944 50 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.078 18.763 -5.028 19.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.109 4.109 3 N -0.086 5.086 4 O 0.031 5.969 5 C -0.030 4.030 6 C -0.139 4.139 7 C -0.284 4.284 8 C 0.391 3.609 9 O -0.445 6.445 10 N -0.349 5.349 11 C 0.046 3.954 12 H 0.110 0.890 13 C -0.178 4.178 14 C 0.021 3.979 15 N -0.320 5.320 16 C -0.393 4.393 17 H 0.081 0.919 18 C -0.239 4.239 19 N -0.578 5.578 20 Si 0.787 3.213 21 H -0.204 1.204 22 H -0.224 1.224 23 H -0.205 1.205 24 C 0.081 3.919 25 C -0.085 4.085 26 C -0.184 4.184 27 C -0.205 4.205 28 C -0.130 4.130 29 H 0.121 0.879 30 H 0.111 0.889 31 H 0.100 0.900 32 H 0.125 0.875 33 H 0.135 0.865 34 H 0.112 0.888 35 H 0.245 0.755 36 H 0.076 0.924 37 H 0.073 0.927 38 H 0.069 0.931 39 H 0.053 0.947 40 H 0.057 0.943 41 H 0.058 0.942 42 H 0.008 0.992 43 H 0.093 0.907 44 H 0.067 0.933 45 H 0.066 0.934 46 H 0.082 0.918 47 H 0.065 0.935 48 H 0.083 0.917 49 H 0.075 0.925 50 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -0.443 19.507 -5.682 20.322 hybrid contribution 0.510 -1.396 1.215 1.920 sum 0.067 18.111 -4.467 18.653 Atomic orbital electron populations 1.20354 0.83537 1.04672 1.05046 1.25179 0.99714 0.86128 0.99921 1.73596 0.89537 1.23892 1.21601 1.84507 1.21257 1.22993 1.68127 1.25167 0.98182 0.83287 0.96350 1.20689 0.87976 0.99294 1.05898 1.21931 0.93850 0.94809 1.17798 1.16941 0.76158 0.83993 0.83840 1.90808 1.52117 1.68938 1.32590 1.46277 1.69140 1.11422 1.08108 1.20205 0.96320 0.78344 1.00578 0.88992 1.21633 0.97602 0.97704 1.00814 1.20931 0.97371 0.92002 0.87570 1.43813 1.03153 1.71918 1.13107 1.19416 0.93520 1.16230 1.10165 0.91901 1.25676 0.98896 0.96309 1.02984 1.70212 1.26083 1.25604 1.35915 0.85496 0.78506 0.77130 0.80216 1.20380 1.22405 1.20508 1.20795 0.82056 0.91343 0.97669 1.20798 0.95763 0.95890 0.96052 1.21759 0.95670 1.01815 0.99183 1.22297 1.01383 1.01293 0.95506 1.21181 0.97625 0.97548 0.96614 0.87867 0.88911 0.89956 0.87538 0.86467 0.88811 0.75516 0.92414 0.92724 0.93054 0.94663 0.94333 0.94174 0.99228 0.90733 0.93282 0.93382 0.91846 0.93471 0.91683 0.92501 0.89978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.28 10.49 71.24 0.75 -0.53 16 2 C 0.05 1.17 7.59 45.16 0.34 1.51 16 3 N -0.38 -8.92 12.01 -44.77 -0.54 -9.46 16 4 O 0.09 1.94 11.06 76.93 0.85 2.79 16 5 C 0.03 0.66 7.55 25.48 0.19 0.85 16 6 C -0.08 -1.03 10.33 71.23 0.74 -0.29 16 7 C -0.28 -6.42 6.24 -18.75 -0.12 -6.54 16 8 C 0.61 16.20 7.45 86.66 0.65 16.85 16 9 O -0.57 -19.50 16.61 -4.07 -0.07 -19.56 16 10 N -0.70 -16.89 4.88 -455.37 -2.22 -19.12 16 11 C 0.15 4.35 1.79 43.01 0.08 4.43 16 12 H 0.09 2.93 3.94 -2.39 -0.01 2.92 16 13 C -0.14 -4.56 5.20 29.40 0.15 -4.41 16 14 C 0.15 6.00 5.58 87.36 0.49 6.48 16 15 N -0.60 -28.18 2.27 -698.14 -1.58 -29.76 16 16 C -0.26 -13.79 9.44 84.03 0.79 -13.00 16 17 H 0.06 3.24 7.88 -2.91 -0.02 3.22 16 18 C -0.04 -2.32 4.84 84.86 0.41 -1.91 16 19 N -0.93 -53.63 11.11 21.65 0.24 -53.39 16 20 Si 0.96 43.67 29.58 68.60 2.03 45.70 16 21 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 22 H -0.30 -13.79 7.11 99.48 0.71 -13.09 16 23 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 24 C 0.21 9.36 3.56 86.49 0.31 9.67 16 25 C -0.08 -2.78 0.75 -52.55 -0.04 -2.82 16 26 C -0.13 -3.65 8.14 71.98 0.59 -3.06 16 27 C -0.15 -4.60 6.75 71.98 0.49 -4.11 16 28 C -0.09 -2.74 4.39 29.76 0.13 -2.61 16 29 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.12 0.86 8.14 -2.39 -0.02 0.85 16 34 H 0.09 1.27 8.11 -2.38 -0.02 1.26 16 35 H 0.41 8.04 8.60 -92.71 -0.80 7.25 16 36 H 0.06 1.88 7.95 -2.39 -0.02 1.86 16 37 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 38 H 0.05 2.02 5.20 -2.39 -0.01 2.00 16 39 H 0.03 1.48 7.99 -2.39 -0.02 1.46 16 40 H 0.25 13.96 8.31 -92.71 -0.77 13.19 16 41 H 0.04 2.07 6.23 -2.39 -0.01 2.05 16 42 H -0.01 -0.54 7.86 -2.39 -0.02 -0.56 16 43 H 0.07 1.71 8.09 -2.39 -0.02 1.69 16 44 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 45 H 0.05 1.43 8.13 -2.39 -0.02 1.41 16 46 H 0.06 2.12 3.15 -2.39 -0.01 2.12 16 47 H 0.05 1.47 8.13 -2.39 -0.02 1.45 16 48 H 0.06 1.73 7.90 -2.39 -0.02 1.71 16 49 H 0.06 2.00 7.48 -2.39 -0.02 1.99 16 50 H 0.08 2.00 7.64 -2.38 -0.02 1.98 16 Total: -1.00 -67.17 388.54 4.81 -62.36 By element: Atomic # 1 Polarization: 19.76 SS G_CDS: 0.16 Total: 19.92 kcal Atomic # 6 Polarization: -5.42 SS G_CDS: 5.94 Total: 0.52 kcal Atomic # 7 Polarization: -107.62 SS G_CDS: -4.10 Total: -111.72 kcal Atomic # 8 Polarization: -17.56 SS G_CDS: 0.78 Total: -16.78 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.70 kcal Total: -67.17 4.81 -62.36 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089315919.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.447 kcal (2) G-P(sol) polarization free energy of solvation -67.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.357 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds