Wall clock time and date at job start Tue Mar 31 2020 20:00:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30133 * 126.70238 * 2 1 4 4 O 1.20886 * 111.98219 * 180.31902 * 3 2 1 5 5 C 1.34642 * 111.46471 * 359.70148 * 4 3 2 6 6 C 1.47511 * 126.94285 * 179.97438 * 5 4 3 7 7 O 1.21585 * 120.00102 * 180.02562 * 6 5 4 8 8 N 1.34777 * 120.00356 * 0.03062 * 6 5 4 9 9 C 1.46498 * 120.00436 * 180.02562 * 8 6 5 10 10 H 1.08996 * 110.21323 * 33.05687 * 9 8 6 11 11 C 1.52533 * 110.24659 * 270.97466 * 9 8 6 12 12 C 1.46238 * 114.27825 * 151.61924 * 11 9 8 13 13 N 1.50168 * 107.53095 * 58.40738 * 12 11 9 14 14 C 1.36936 * 120.53269 * 109.61050 * 13 12 11 15 15 H 1.08004 * 119.99868 * 156.65441 * 14 13 12 16 16 C 1.38807 * 120.00312 * 336.65163 * 14 13 12 17 17 N 1.31623 * 120.00105 * 340.44428 * 16 14 13 18 18 Si 1.86803 * 120.00336 * 160.44658 * 16 14 13 19 19 H 1.48499 * 109.46869 * 59.99774 * 18 16 14 20 20 H 1.48493 * 109.47487 * 180.02562 * 18 16 14 21 21 H 1.48505 * 109.46989 * 300.00496 * 18 16 14 22 22 C 1.43439 * 118.92845 * 289.59201 * 13 12 11 23 23 C 1.54904 * 116.07621 * 91.56771 * 22 13 12 24 24 C 1.52999 * 109.35370 * 198.43544 * 23 22 13 25 25 C 1.52998 * 109.25009 * 78.78094 * 23 22 13 26 26 C 1.50122 * 110.25036 * 155.00017 * 9 8 6 27 27 C 1.36823 * 106.11677 * 0.02562 * 5 4 3 28 28 C 1.50705 * 128.08111 * 180.02562 * 27 5 4 29 29 H 1.09003 * 109.46831 * 270.16884 * 1 2 3 30 30 H 1.08998 * 109.47551 * 30.16748 * 1 2 3 31 31 H 1.09001 * 109.46993 * 150.17131 * 1 2 3 32 32 H 0.97004 * 119.99369 * 359.97438 * 8 6 5 33 33 H 1.08996 * 108.52132 * 272.86414 * 11 9 8 34 34 H 1.09005 * 108.52260 * 30.37979 * 11 9 8 35 35 H 1.08996 * 109.84273 * 298.90551 * 12 11 9 36 36 H 1.09000 * 109.84832 * 177.91862 * 12 11 9 37 37 H 0.96999 * 119.99874 * 179.97438 * 17 16 14 38 38 H 1.08992 * 108.15518 * 329.85117 * 22 13 12 39 39 H 1.09003 * 107.99652 * 213.15571 * 22 13 12 40 40 H 1.08997 * 109.47283 * 180.68280 * 24 23 22 41 41 H 1.09003 * 109.47259 * 300.67949 * 24 23 22 42 42 H 1.08996 * 109.47429 * 60.68194 * 24 23 22 43 43 H 1.09004 * 109.46799 * 299.38068 * 25 23 22 44 44 H 1.08995 * 109.47590 * 59.38053 * 25 23 22 45 45 H 1.08998 * 109.46925 * 179.38481 * 25 23 22 46 46 H 1.08998 * 109.20884 * 336.99390 * 26 9 8 47 47 H 1.09000 * 109.21536 * 96.35315 * 26 9 8 48 48 H 1.09001 * 109.46934 * 89.99686 * 28 27 5 49 49 H 1.08995 * 109.46693 * 329.99517 * 28 27 5 50 50 H 1.09001 * 109.46744 * 209.99506 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2848 1.0433 0.0000 4 8 3.4540 0.7362 -0.0062 5 6 3.6121 -0.6009 -0.0049 6 6 4.8870 -1.3429 -0.0115 7 8 4.8829 -2.5587 -0.0098 8 7 6.0566 -0.6731 -0.0194 9 6 7.3227 -1.4100 -0.0265 10 1 7.2136 -2.3408 -0.5829 11 6 7.7755 -1.6952 1.4019 12 6 8.5873 -2.9031 1.5454 13 7 9.7923 -2.7457 0.6632 14 6 11.0341 -2.5571 1.2087 15 1 11.9172 -2.8148 0.6430 16 6 11.1578 -2.0345 2.4887 17 7 10.1570 -1.3714 3.0284 18 14 12.7445 -2.2723 3.4455 19 1 13.8705 -1.6584 2.6969 20 1 12.6222 -1.6244 4.7760 21 1 13.0020 -3.7239 3.6240 22 6 9.6216 -2.7966 -0.7601 23 6 9.3796 -1.4391 -1.4659 24 6 8.7735 -1.6874 -2.8485 25 6 10.7137 -0.7064 -1.6211 26 6 8.4101 -0.5686 -0.6292 27 6 2.3514 -1.1325 0.0028 28 6 1.9558 -2.5867 0.0078 29 1 -0.3633 0.0030 1.0277 30 1 -0.3634 0.8884 -0.5164 31 1 -0.3633 -0.8915 -0.5112 32 1 6.0599 0.2969 -0.0210 33 1 8.3556 -0.8438 1.7577 34 1 6.8917 -1.7951 2.0319 35 1 8.0119 -3.7747 1.2338 36 1 8.9007 -3.0172 2.5831 37 1 10.2434 -1.0066 3.9231 38 1 8.7754 -3.4482 -0.9775 39 1 10.5152 -3.2488 -1.1905 40 1 8.6136 -0.7339 -3.3518 41 1 9.4546 -2.3002 -3.4391 42 1 7.8205 -2.2051 -2.7399 43 1 11.1449 -0.5243 -0.6367 44 1 11.3977 -1.3177 -2.2099 45 1 10.5491 0.2447 -2.1273 46 1 7.9625 0.1889 -1.2725 47 1 8.9677 -0.0776 0.1684 48 1 1.8658 -2.9351 1.0367 49 1 2.7165 -3.1719 -0.5088 50 1 0.9989 -2.7046 -0.5008 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089417895.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:00:12 Heat of formation + Delta-G solvation = 41.042925 kcal Electronic energy + Delta-G solvation = -30760.035192 eV Core-core repulsion = 26791.194308 eV Total energy + Delta-G solvation = -3968.840885 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -45.10111 -39.88141 -38.24140 -35.69464 -34.64787 -34.39624 -32.83320 -31.50102 -30.62764 -29.05359 -28.37361 -27.46355 -26.67377 -25.51093 -24.11455 -23.06926 -21.93918 -21.40678 -20.11245 -19.95905 -18.40154 -17.91330 -17.57309 -16.71532 -15.98212 -15.85245 -15.07595 -14.64110 -14.45447 -14.10800 -13.97136 -13.80171 -13.63352 -13.45366 -13.31134 -13.19742 -13.13407 -12.92410 -12.59639 -12.52318 -12.36584 -11.89621 -11.67005 -11.45979 -11.27752 -11.24088 -10.89410 -10.84540 -10.69569 -10.61768 -10.32762 -10.10404 -10.09759 -10.05374 -9.79523 -9.66942 -9.55034 -9.50293 -9.25482 -8.72003 -8.34040 -6.69944 -5.78351 -3.16576 0.75647 1.87469 2.62342 3.09966 3.35315 3.39107 3.45621 3.47772 3.87170 4.31906 4.51716 4.66300 4.78341 5.09715 5.15507 5.22723 5.35556 5.37558 5.39145 5.47873 5.49723 5.52024 5.59696 5.62539 5.75139 5.85233 5.98238 6.04541 6.09172 6.15280 6.26747 6.29188 6.35545 6.44248 6.55378 6.59006 6.71327 6.78705 6.89763 6.97062 7.02906 7.05932 7.20848 7.23841 7.52794 7.63579 7.74313 7.93400 7.98491 8.21467 8.43659 9.19841 9.87880 10.41176 11.28733 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.016895 B = 0.003145 C = 0.002929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1656.852872 B = 8899.642840 C = 9557.511319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.008 3.992 3 N -0.348 5.348 4 O 0.115 5.885 5 C -0.083 4.083 6 C 0.600 3.400 7 O -0.511 6.511 8 N -0.701 5.701 9 C 0.145 3.855 10 H 0.090 0.910 11 C -0.134 4.134 12 C 0.169 3.831 13 N -0.585 5.585 14 C -0.243 4.243 15 H 0.066 0.934 16 C 0.003 3.997 17 N -0.900 5.900 18 Si 0.897 3.103 19 H -0.285 1.285 20 H -0.292 1.292 21 H -0.286 1.286 22 C 0.166 3.834 23 C -0.088 4.088 24 C -0.136 4.136 25 C -0.129 4.129 26 C -0.103 4.103 27 C -0.125 4.125 28 C -0.084 4.084 29 H 0.082 0.918 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.401 0.599 33 H 0.104 0.896 34 H 0.029 0.971 35 H 0.009 0.991 36 H 0.092 0.908 37 H 0.252 0.748 38 H 0.029 0.971 39 H 0.034 0.966 40 H 0.044 0.956 41 H 0.048 0.952 42 H 0.047 0.953 43 H 0.072 0.928 44 H 0.042 0.958 45 H 0.033 0.967 46 H 0.043 0.957 47 H 0.084 0.916 48 H 0.079 0.921 49 H 0.091 0.909 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.203 2.193 -7.849 17.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.150 4.150 3 N -0.050 5.050 4 O 0.043 5.957 5 C -0.149 4.149 6 C 0.383 3.617 7 O -0.387 6.387 8 N -0.350 5.350 9 C 0.042 3.958 10 H 0.108 0.892 11 C -0.173 4.173 12 C 0.045 3.955 13 N -0.305 5.305 14 C -0.372 4.372 15 H 0.084 0.916 16 C -0.195 4.195 17 N -0.545 5.545 18 Si 0.728 3.272 19 H -0.212 1.212 20 H -0.219 1.219 21 H -0.213 1.213 22 C 0.036 3.964 23 C -0.093 4.093 24 C -0.194 4.194 25 C -0.186 4.186 26 C -0.141 4.141 27 C -0.130 4.130 28 C -0.141 4.141 29 H 0.100 0.900 30 H 0.096 0.904 31 H 0.102 0.898 32 H 0.235 0.765 33 H 0.123 0.877 34 H 0.048 0.952 35 H 0.027 0.973 36 H 0.110 0.890 37 H 0.062 0.938 38 H 0.047 0.953 39 H 0.052 0.948 40 H 0.063 0.937 41 H 0.068 0.932 42 H 0.066 0.934 43 H 0.091 0.909 44 H 0.061 0.939 45 H 0.052 0.948 46 H 0.062 0.938 47 H 0.102 0.898 48 H 0.098 0.902 49 H 0.110 0.890 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -15.386 2.673 -7.646 17.388 hybrid contribution 0.707 0.016 0.590 0.921 sum -14.678 2.689 -7.056 16.507 Atomic orbital electron populations 1.20176 0.85451 1.03893 1.03578 1.23502 0.99165 0.88231 1.04144 1.73713 0.89386 1.24289 1.17589 1.84948 1.21249 1.22185 1.67316 1.24257 0.97422 0.83648 1.09531 1.16492 0.80987 0.86305 0.77920 1.90841 1.85756 1.11686 1.50395 1.46234 1.05776 1.10532 1.72454 1.20655 0.80059 0.95448 0.99602 0.89180 1.21367 0.98743 1.04720 0.92480 1.20098 0.85718 0.92214 0.97497 1.44255 1.04556 1.82667 0.99056 1.19124 0.84358 1.35075 0.98673 0.91588 1.24859 0.97134 0.98048 0.99487 1.69940 1.31597 1.36962 1.16049 0.86446 0.83572 0.77821 0.79378 1.21152 1.21852 1.21289 1.20528 0.98058 0.92124 0.85682 1.21929 0.94388 0.99319 0.93620 1.21852 1.00128 1.00476 0.96919 1.21743 0.96395 0.98053 1.02403 1.21802 0.95487 0.97137 0.99665 1.21457 0.90323 0.98530 1.02667 1.20314 1.02371 0.87951 1.03441 0.89976 0.90379 0.89830 0.76469 0.87748 0.95187 0.97257 0.89002 0.93761 0.95279 0.94781 0.93710 0.93242 0.93381 0.90878 0.93885 0.94803 0.93830 0.89788 0.90202 0.89011 0.91066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.54 10.39 36.01 0.37 -0.17 16 2 C 0.01 0.09 7.31 -82.16 -0.60 -0.51 16 3 N -0.35 -4.68 12.04 33.52 0.40 -4.28 16 4 O 0.11 1.57 11.04 15.55 0.17 1.74 16 5 C -0.08 -1.16 7.29 -36.32 -0.26 -1.42 16 6 C 0.60 9.48 7.82 -12.48 -0.10 9.38 16 7 O -0.51 -9.30 14.76 5.29 0.08 -9.23 16 8 N -0.70 -10.70 4.94 -56.50 -0.28 -10.98 16 9 C 0.14 2.56 2.16 -69.60 -0.15 2.41 16 10 H 0.09 1.73 5.16 -51.93 -0.27 1.46 16 11 C -0.13 -2.78 4.74 -30.18 -0.14 -2.92 16 12 C 0.17 3.87 5.25 -5.20 -0.03 3.84 16 13 N -0.59 -13.55 2.60 -175.08 -0.46 -14.00 16 14 C -0.24 -6.17 8.94 -15.06 -0.13 -6.30 16 15 H 0.07 1.69 7.88 -52.48 -0.41 1.27 16 16 C 0.00 0.07 4.91 -17.43 -0.09 -0.02 16 17 N -0.90 -23.78 9.43 55.49 0.52 -23.26 16 18 Si 0.90 20.96 29.60 -169.99 -5.03 15.93 16 19 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 20 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 21 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 22 C 0.17 3.30 4.00 -4.66 -0.02 3.29 16 23 C -0.09 -1.53 0.76 -152.53 -0.12 -1.64 16 24 C -0.14 -2.00 8.20 37.16 0.30 -1.69 16 25 C -0.13 -2.23 8.28 37.16 0.31 -1.93 16 26 C -0.10 -1.78 4.15 -27.19 -0.11 -1.89 16 27 C -0.12 -1.55 6.36 -103.98 -0.66 -2.21 16 28 C -0.08 -0.86 9.86 36.01 0.36 -0.50 16 29 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.08 0.46 7.64 -51.93 -0.40 0.06 16 32 H 0.40 5.27 8.35 -40.82 -0.34 4.93 16 33 H 0.10 2.45 5.29 -51.93 -0.27 2.17 16 34 H 0.03 0.63 8.02 -51.93 -0.42 0.21 16 35 H 0.01 0.21 8.12 -51.93 -0.42 -0.21 16 36 H 0.09 2.36 6.05 -51.93 -0.31 2.04 16 37 H 0.25 6.64 8.31 -40.82 -0.34 6.30 16 38 H 0.03 0.57 6.69 -51.93 -0.35 0.22 16 39 H 0.03 0.69 7.81 -51.93 -0.41 0.28 16 40 H 0.04 0.60 8.13 -51.93 -0.42 0.18 16 41 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.05 0.71 7.57 -51.93 -0.39 0.32 16 43 H 0.07 1.50 7.45 -51.93 -0.39 1.11 16 44 H 0.04 0.70 8.11 -51.93 -0.42 0.28 16 45 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.04 0.66 7.68 -51.93 -0.40 0.26 16 47 H 0.08 1.71 6.65 -51.93 -0.35 1.36 16 48 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 49 H 0.09 1.09 6.73 -51.93 -0.35 0.74 16 50 H 0.07 0.53 7.64 -51.93 -0.40 0.13 16 LS Contribution 386.19 15.07 5.82 5.82 Total: -1.00 -27.85 386.19 -7.80 -35.65 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: -7.96 Total: 4.89 kcal Atomic # 6 Polarization: -1.22 SS G_CDS: -1.07 Total: -2.29 kcal Atomic # 7 Polarization: -52.71 SS G_CDS: 0.19 Total: -52.52 kcal Atomic # 8 Polarization: -7.73 SS G_CDS: 0.25 Total: -7.48 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.03 Total: 15.93 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -27.85 -7.80 -35.65 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089417895.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.695 kcal (2) G-P(sol) polarization free energy of solvation -27.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.652 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds