Wall clock time and date at job start Tue Mar 31 2020 20:00:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30133 * 126.70238 * 2 1 4 4 O 1.20886 * 111.98219 * 180.31902 * 3 2 1 5 5 C 1.34642 * 111.46471 * 359.70148 * 4 3 2 6 6 C 1.47511 * 126.94285 * 179.97438 * 5 4 3 7 7 O 1.21585 * 120.00102 * 180.02562 * 6 5 4 8 8 N 1.34777 * 120.00356 * 0.03062 * 6 5 4 9 9 C 1.46498 * 120.00436 * 180.02562 * 8 6 5 10 10 H 1.08996 * 110.21323 * 33.05687 * 9 8 6 11 11 C 1.52533 * 110.24659 * 270.97466 * 9 8 6 12 12 C 1.46238 * 114.27825 * 151.61924 * 11 9 8 13 13 N 1.50168 * 107.53095 * 58.40738 * 12 11 9 14 14 C 1.36936 * 120.53269 * 109.61050 * 13 12 11 15 15 H 1.08004 * 119.99868 * 156.65441 * 14 13 12 16 16 C 1.38807 * 120.00312 * 336.65163 * 14 13 12 17 17 N 1.31623 * 120.00105 * 340.44428 * 16 14 13 18 18 Si 1.86803 * 120.00336 * 160.44658 * 16 14 13 19 19 H 1.48499 * 109.46869 * 59.99774 * 18 16 14 20 20 H 1.48493 * 109.47487 * 180.02562 * 18 16 14 21 21 H 1.48505 * 109.46989 * 300.00496 * 18 16 14 22 22 C 1.43439 * 118.92845 * 289.59201 * 13 12 11 23 23 C 1.54904 * 116.07621 * 91.56771 * 22 13 12 24 24 C 1.52999 * 109.35370 * 198.43544 * 23 22 13 25 25 C 1.52998 * 109.25009 * 78.78094 * 23 22 13 26 26 C 1.50122 * 110.25036 * 155.00017 * 9 8 6 27 27 C 1.36823 * 106.11677 * 0.02562 * 5 4 3 28 28 C 1.50705 * 128.08111 * 180.02562 * 27 5 4 29 29 H 1.09003 * 109.46831 * 270.16884 * 1 2 3 30 30 H 1.08998 * 109.47551 * 30.16748 * 1 2 3 31 31 H 1.09001 * 109.46993 * 150.17131 * 1 2 3 32 32 H 0.97004 * 119.99369 * 359.97438 * 8 6 5 33 33 H 1.08996 * 108.52132 * 272.86414 * 11 9 8 34 34 H 1.09005 * 108.52260 * 30.37979 * 11 9 8 35 35 H 1.08996 * 109.84273 * 298.90551 * 12 11 9 36 36 H 1.09000 * 109.84832 * 177.91862 * 12 11 9 37 37 H 0.96999 * 119.99874 * 179.97438 * 17 16 14 38 38 H 1.08992 * 108.15518 * 329.85117 * 22 13 12 39 39 H 1.09003 * 107.99652 * 213.15571 * 22 13 12 40 40 H 1.08997 * 109.47283 * 180.68280 * 24 23 22 41 41 H 1.09003 * 109.47259 * 300.67949 * 24 23 22 42 42 H 1.08996 * 109.47429 * 60.68194 * 24 23 22 43 43 H 1.09004 * 109.46799 * 299.38068 * 25 23 22 44 44 H 1.08995 * 109.47590 * 59.38053 * 25 23 22 45 45 H 1.08998 * 109.46925 * 179.38481 * 25 23 22 46 46 H 1.08998 * 109.20884 * 336.99390 * 26 9 8 47 47 H 1.09000 * 109.21536 * 96.35315 * 26 9 8 48 48 H 1.09001 * 109.46934 * 89.99686 * 28 27 5 49 49 H 1.08995 * 109.46693 * 329.99517 * 28 27 5 50 50 H 1.09001 * 109.46744 * 209.99506 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2848 1.0433 0.0000 4 8 3.4540 0.7362 -0.0062 5 6 3.6121 -0.6009 -0.0049 6 6 4.8870 -1.3429 -0.0115 7 8 4.8829 -2.5587 -0.0098 8 7 6.0566 -0.6731 -0.0194 9 6 7.3227 -1.4100 -0.0265 10 1 7.2136 -2.3408 -0.5829 11 6 7.7755 -1.6952 1.4019 12 6 8.5873 -2.9031 1.5454 13 7 9.7923 -2.7457 0.6632 14 6 11.0341 -2.5571 1.2087 15 1 11.9172 -2.8148 0.6430 16 6 11.1578 -2.0345 2.4887 17 7 10.1570 -1.3714 3.0284 18 14 12.7445 -2.2723 3.4455 19 1 13.8705 -1.6584 2.6969 20 1 12.6222 -1.6244 4.7760 21 1 13.0020 -3.7239 3.6240 22 6 9.6216 -2.7966 -0.7601 23 6 9.3796 -1.4391 -1.4659 24 6 8.7735 -1.6874 -2.8485 25 6 10.7137 -0.7064 -1.6211 26 6 8.4101 -0.5686 -0.6292 27 6 2.3514 -1.1325 0.0028 28 6 1.9558 -2.5867 0.0078 29 1 -0.3633 0.0030 1.0277 30 1 -0.3634 0.8884 -0.5164 31 1 -0.3633 -0.8915 -0.5112 32 1 6.0599 0.2969 -0.0210 33 1 8.3556 -0.8438 1.7577 34 1 6.8917 -1.7951 2.0319 35 1 8.0119 -3.7747 1.2338 36 1 8.9007 -3.0172 2.5831 37 1 10.2434 -1.0066 3.9231 38 1 8.7754 -3.4482 -0.9775 39 1 10.5152 -3.2488 -1.1905 40 1 8.6136 -0.7339 -3.3518 41 1 9.4546 -2.3002 -3.4391 42 1 7.8205 -2.2051 -2.7399 43 1 11.1449 -0.5243 -0.6367 44 1 11.3977 -1.3177 -2.2099 45 1 10.5491 0.2447 -2.1273 46 1 7.9625 0.1889 -1.2725 47 1 8.9677 -0.0776 0.1684 48 1 1.8658 -2.9351 1.0367 49 1 2.7165 -3.1719 -0.5088 50 1 0.9989 -2.7046 -0.5008 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001089417895.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:00:11 Heat of formation + Delta-G solvation = 25.798106 kcal Electronic energy + Delta-G solvation = -30760.696257 eV Core-core repulsion = 26791.194308 eV Total energy + Delta-G solvation = -3969.501950 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -46.06733 -41.28414 -39.72159 -36.69660 -36.17078 -35.90651 -33.90636 -33.18280 -32.28753 -29.88339 -29.37437 -28.82534 -28.02439 -27.27922 -25.46283 -24.62361 -23.04681 -22.78242 -21.61123 -21.31446 -19.66488 -18.91361 -18.88264 -18.55350 -17.37683 -17.05940 -16.74003 -15.98843 -15.93657 -15.73376 -15.22435 -15.11850 -14.90963 -14.60612 -14.46495 -14.24506 -14.04953 -13.87134 -13.82618 -13.79727 -13.49514 -13.24208 -13.16779 -13.03082 -12.88477 -12.62966 -12.49998 -12.36139 -12.26811 -12.15811 -11.93607 -11.73515 -11.60127 -11.41044 -11.15800 -11.10819 -10.98691 -10.96590 -10.59710 -10.44487 -9.97816 -8.59594 -7.76784 -5.15805 -0.31715 0.96899 1.49719 1.51206 1.53345 1.57733 1.88415 2.18113 2.58243 3.04198 3.36277 3.39927 3.59643 3.69564 3.87183 3.97303 4.05983 4.09016 4.21258 4.44123 4.48527 4.54241 4.59025 4.64482 4.74071 4.76410 4.78350 4.81171 4.88421 4.90299 4.93809 4.96433 5.06536 5.10236 5.13527 5.22822 5.27006 5.29531 5.33060 5.36088 5.48565 5.54168 5.66127 5.67368 5.71753 5.81052 6.10209 6.32340 6.47352 6.91861 7.02235 7.22589 7.95991 8.47845 9.27628 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.016895 B = 0.003145 C = 0.002929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1656.852872 B = 8899.642840 C = 9557.511319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.016 3.984 3 N -0.366 5.366 4 O 0.104 5.896 5 C -0.103 4.103 6 C 0.604 3.396 7 O -0.538 6.538 8 N -0.695 5.695 9 C 0.163 3.837 10 H 0.081 0.919 11 C -0.119 4.119 12 C 0.174 3.826 13 N -0.595 5.595 14 C -0.245 4.245 15 H 0.062 0.938 16 C -0.040 4.040 17 N -0.916 5.916 18 Si 0.950 3.050 19 H -0.281 1.281 20 H -0.299 1.299 21 H -0.288 1.288 22 C 0.162 3.838 23 C -0.084 4.084 24 C -0.128 4.128 25 C -0.122 4.122 26 C -0.094 4.094 27 C -0.120 4.120 28 C -0.084 4.084 29 H 0.096 0.904 30 H 0.085 0.915 31 H 0.107 0.893 32 H 0.412 0.588 33 H 0.079 0.921 34 H 0.020 0.980 35 H 0.011 0.989 36 H 0.060 0.940 37 H 0.245 0.755 38 H 0.032 0.968 39 H 0.031 0.969 40 H 0.064 0.936 41 H 0.060 0.940 42 H 0.047 0.953 43 H 0.035 0.965 44 H 0.051 0.949 45 H 0.055 0.945 46 H 0.071 0.929 47 H 0.051 0.949 48 H 0.086 0.914 49 H 0.073 0.927 50 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.070 2.523 -9.681 19.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.143 4.143 3 N -0.070 5.070 4 O 0.034 5.966 5 C -0.168 4.168 6 C 0.388 3.612 7 O -0.416 6.416 8 N -0.345 5.345 9 C 0.059 3.941 10 H 0.099 0.901 11 C -0.158 4.158 12 C 0.050 3.950 13 N -0.317 5.317 14 C -0.375 4.375 15 H 0.080 0.920 16 C -0.236 4.236 17 N -0.562 5.562 18 Si 0.780 3.220 19 H -0.207 1.207 20 H -0.225 1.225 21 H -0.215 1.215 22 C 0.034 3.966 23 C -0.088 4.088 24 C -0.186 4.186 25 C -0.179 4.179 26 C -0.132 4.132 27 C -0.125 4.125 28 C -0.140 4.140 29 H 0.115 0.885 30 H 0.104 0.896 31 H 0.126 0.874 32 H 0.249 0.751 33 H 0.097 0.903 34 H 0.039 0.961 35 H 0.030 0.970 36 H 0.079 0.921 37 H 0.054 0.946 38 H 0.051 0.949 39 H 0.049 0.951 40 H 0.083 0.917 41 H 0.079 0.921 42 H 0.066 0.934 43 H 0.054 0.946 44 H 0.070 0.930 45 H 0.074 0.926 46 H 0.090 0.910 47 H 0.070 0.930 48 H 0.104 0.896 49 H 0.092 0.908 50 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -17.238 3.018 -9.508 19.916 hybrid contribution 1.207 -0.131 1.149 1.672 sum -16.031 2.886 -8.359 18.308 Atomic orbital electron populations 1.20424 0.82332 1.05503 1.04979 1.24151 1.00922 0.87116 1.02082 1.73706 0.89507 1.25230 1.18605 1.84931 1.21640 1.21841 1.68139 1.23964 0.97080 0.84153 1.11646 1.16641 0.81506 0.86065 0.76976 1.90824 1.86331 1.12892 1.51568 1.46057 1.04985 1.11019 1.72452 1.20249 0.81248 0.95530 0.97059 0.90074 1.21137 0.97522 1.02610 0.94576 1.19923 0.86056 0.93204 0.95858 1.44296 1.03903 1.83040 1.00415 1.19253 0.85113 1.34243 0.98867 0.91988 1.25403 0.99387 0.98502 1.00330 1.70089 1.32734 1.37768 1.15633 0.85611 0.81158 0.77274 0.77933 1.20728 1.22524 1.21459 1.20645 0.98026 0.93937 0.84038 1.21835 0.94701 0.97292 0.94967 1.21765 1.00045 1.01801 0.94944 1.21652 0.96268 0.99394 1.00595 1.21656 0.94984 0.97479 0.99099 1.21881 0.89853 0.99831 1.00939 1.20404 1.03445 0.86163 1.04004 0.88523 0.89617 0.87412 0.75125 0.90259 0.96086 0.97044 0.92145 0.94572 0.94937 0.95113 0.91750 0.92084 0.93420 0.94619 0.92982 0.92583 0.91029 0.93013 0.89589 0.90829 0.87666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.84 10.39 71.24 0.74 -0.10 16 2 C 0.02 0.33 7.31 43.55 0.32 0.64 16 3 N -0.37 -9.35 12.04 -48.85 -0.59 -9.93 16 4 O 0.10 2.77 11.04 65.83 0.73 3.49 16 5 C -0.10 -2.81 7.29 24.39 0.18 -2.63 16 6 C 0.60 18.93 7.82 86.69 0.68 19.61 16 7 O -0.54 -19.63 14.76 -3.98 -0.06 -19.69 16 8 N -0.70 -21.02 4.94 -450.93 -2.23 -23.25 16 9 C 0.16 5.76 2.16 43.91 0.09 5.86 16 10 H 0.08 3.09 5.16 -2.39 -0.01 3.08 16 11 C -0.12 -5.12 4.74 28.36 0.13 -4.99 16 12 C 0.17 8.27 5.25 83.58 0.44 8.71 16 13 N -0.60 -28.23 2.60 -707.83 -1.84 -30.07 16 14 C -0.24 -12.72 8.94 84.03 0.75 -11.97 16 15 H 0.06 3.23 7.88 -2.91 -0.02 3.20 16 16 C -0.04 -2.15 4.91 84.86 0.42 -1.73 16 17 N -0.92 -50.25 9.43 21.65 0.20 -50.05 16 18 Si 0.95 44.07 29.60 68.60 2.03 46.10 16 19 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 20 H -0.30 -14.07 7.11 99.48 0.71 -13.37 16 21 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 22 C 0.16 6.43 4.00 87.60 0.35 6.78 16 23 C -0.08 -2.80 0.76 -50.90 -0.04 -2.84 16 24 C -0.13 -3.38 8.20 71.98 0.59 -2.79 16 25 C -0.12 -4.08 8.28 71.98 0.60 -3.49 16 26 C -0.09 -3.20 4.15 30.30 0.13 -3.07 16 27 C -0.12 -2.77 6.36 -19.45 -0.12 -2.90 16 28 C -0.08 -1.53 9.86 71.24 0.70 -0.82 16 29 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.11 0.70 7.64 -2.39 -0.02 0.68 16 32 H 0.41 10.62 8.35 -92.71 -0.77 9.85 16 33 H 0.08 3.88 5.29 -2.39 -0.01 3.87 16 34 H 0.02 0.91 8.02 -2.38 -0.02 0.89 16 35 H 0.01 0.53 8.12 -2.39 -0.02 0.51 16 36 H 0.06 3.25 6.05 -2.39 -0.01 3.24 16 37 H 0.24 13.39 8.31 -92.71 -0.77 12.62 16 38 H 0.03 1.26 6.69 -2.39 -0.02 1.24 16 39 H 0.03 1.23 7.81 -2.39 -0.02 1.21 16 40 H 0.06 1.48 8.13 -2.39 -0.02 1.47 16 41 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 42 H 0.05 1.28 7.57 -2.39 -0.02 1.26 16 43 H 0.03 1.46 7.45 -2.38 -0.02 1.44 16 44 H 0.05 1.62 8.11 -2.39 -0.02 1.60 16 45 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 46 H 0.07 2.03 7.68 -2.39 -0.02 2.01 16 47 H 0.05 2.13 6.65 -2.39 -0.02 2.12 16 48 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 49 H 0.07 1.66 6.73 -2.39 -0.02 1.65 16 50 H 0.10 1.18 7.64 -2.39 -0.02 1.16 16 Total: -1.00 -62.20 386.19 4.38 -57.82 By element: Atomic # 1 Polarization: 21.12 SS G_CDS: 0.18 Total: 21.30 kcal Atomic # 6 Polarization: -1.68 SS G_CDS: 5.95 Total: 4.27 kcal Atomic # 7 Polarization: -108.85 SS G_CDS: -4.46 Total: -113.30 kcal Atomic # 8 Polarization: -16.86 SS G_CDS: 0.67 Total: -16.19 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Total: -62.20 4.38 -57.82 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089417895.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.620 kcal (2) G-P(sol) polarization free energy of solvation -62.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.822 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds