Wall clock time and date at job start Tue Mar 31 2020 18:25:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.30013 * 127.33809 * 2 1 4 4 O 1.20655 * 112.30031 * 180.02562 * 3 2 1 5 5 C 1.33486 * 113.15991 * 359.70919 * 4 3 2 6 6 C 1.50701 * 126.83217 * 180.30824 * 5 4 3 7 7 C 1.37365 * 106.34204 * 0.45582 * 5 4 3 8 8 C 1.47394 * 128.56650 * 179.85272 * 7 5 4 9 9 O 1.21605 * 120.00293 * 275.41002 * 8 7 5 10 10 N 1.34776 * 119.99820 * 95.41103 * 8 7 5 11 11 C 1.46498 * 119.99904 * 185.25748 * 10 8 7 12 12 C 1.53001 * 109.47326 * 186.85618 * 11 10 8 13 13 H 1.09000 * 109.58625 * 301.76299 * 12 11 10 14 14 C 1.53197 * 109.70511 * 181.40839 * 12 11 10 15 15 C 1.53039 * 109.31033 * 185.51025 * 14 12 11 16 16 C 1.53041 * 109.54141 * 61.35965 * 15 14 12 17 17 C 1.52999 * 109.49692 * 178.67854 * 16 15 14 18 18 C 1.53003 * 109.52186 * 58.60267 * 16 15 14 19 19 C 1.53185 * 109.31406 * 298.63761 * 16 15 14 20 20 N 1.46923 * 109.58524 * 62.04334 * 12 11 10 21 21 C 1.36940 * 120.63190 * 353.56703 * 20 12 11 22 22 H 1.07996 * 120.00007 * 323.94926 * 21 20 12 23 23 C 1.38814 * 119.99992 * 143.95552 * 21 20 12 24 24 N 1.31614 * 120.00061 * 357.51221 * 23 21 20 25 25 Si 1.86797 * 119.99783 * 177.50821 * 23 21 20 26 26 H 1.48504 * 109.47218 * 59.15006 * 25 23 21 27 27 H 1.48497 * 109.47351 * 179.14717 * 25 23 21 28 28 H 1.48497 * 109.47525 * 299.14844 * 25 23 21 29 29 H 1.09005 * 109.47250 * 274.66899 * 1 2 3 30 30 H 1.08997 * 109.46684 * 34.66162 * 1 2 3 31 31 H 1.08994 * 109.47159 * 154.66355 * 1 2 3 32 32 H 1.08996 * 109.47120 * 270.17694 * 6 5 4 33 33 H 1.09001 * 109.46826 * 30.17695 * 6 5 4 34 34 H 1.09001 * 109.46738 * 150.17221 * 6 5 4 35 35 H 0.96999 * 119.99947 * 5.26006 * 10 8 7 36 36 H 1.09001 * 109.46989 * 66.85857 * 11 10 8 37 37 H 1.08999 * 109.47552 * 306.85532 * 11 10 8 38 38 H 1.08996 * 109.49040 * 305.45545 * 14 12 11 39 39 H 1.08989 * 109.49676 * 65.55644 * 14 12 11 40 40 H 1.09002 * 109.45710 * 301.34473 * 15 14 12 41 41 H 1.08996 * 109.46077 * 181.38603 * 15 14 12 42 42 H 1.09000 * 109.47087 * 179.83711 * 17 16 15 43 43 H 1.08991 * 109.47525 * 299.84556 * 17 16 15 44 44 H 1.09008 * 109.46784 * 59.84534 * 17 16 15 45 45 H 1.08999 * 109.47242 * 300.14699 * 18 16 15 46 46 H 1.09002 * 109.46773 * 60.14470 * 18 16 15 47 47 H 1.08996 * 109.47057 * 180.13861 * 18 16 15 48 48 H 1.09001 * 109.58656 * 294.84402 * 19 16 15 49 49 H 1.09005 * 109.70143 * 174.49060 * 19 16 15 50 50 H 0.97007 * 120.00023 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2956 1.0337 0.0000 4 8 3.4608 0.7206 -0.0005 5 6 3.6494 -0.6008 0.0053 6 6 4.9712 -1.3247 0.0129 7 6 2.3992 -1.1697 -0.0005 8 6 2.0401 -2.5992 -0.0006 9 8 1.9936 -3.2144 -1.0486 10 7 1.7632 -3.2246 1.1607 11 6 1.5193 -4.6691 1.1748 12 6 1.0642 -5.0959 2.5718 13 1 1.8254 -4.8240 3.3030 14 6 0.8414 -6.6113 2.6019 15 6 0.2563 -7.0099 3.9587 16 6 -1.0949 -6.3189 4.1564 17 6 -1.6942 -6.7438 5.4984 18 6 -2.0437 -6.7178 3.0243 19 6 -0.8939 -4.8004 4.1438 20 7 -0.2000 -4.4253 2.9043 21 6 -0.7220 -3.4692 2.0743 22 1 -0.0643 -2.7920 1.5498 23 6 -2.0965 -3.3705 1.9074 24 7 -2.8956 -4.2266 2.5080 25 14 -2.8120 -2.0225 0.8302 26 1 -2.2759 -2.1537 -0.5485 27 1 -4.2915 -2.1461 0.7997 28 1 -2.4374 -0.6961 1.3827 29 1 -0.3634 0.0837 1.0243 30 1 -0.3632 0.8453 -0.5845 31 1 -0.3633 -0.9288 -0.4397 32 1 5.2951 -1.5004 -1.0128 33 1 5.7147 -0.7180 0.5299 34 1 4.8597 -2.2792 0.5274 35 1 1.7253 -2.7183 1.9872 36 1 2.4380 -5.1952 0.9154 37 1 0.7434 -4.9137 0.4494 38 1 0.1477 -6.8927 1.8097 39 1 1.7925 -7.1219 2.4517 40 1 0.9391 -6.7059 4.7520 41 1 0.1197 -8.0908 3.9918 42 1 -2.6551 -6.2492 5.6401 43 1 -1.8369 -7.8243 5.5069 44 1 -1.0174 -6.4604 6.3046 45 1 -1.6158 -6.4161 2.0683 46 1 -2.1863 -7.7985 3.0336 47 1 -3.0048 -6.2234 3.1645 48 1 -0.2924 -4.5043 5.0033 49 1 -1.8621 -4.3012 4.1860 50 1 -3.8561 -4.1578 2.3910 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089607049.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:26 Heat of formation + Delta-G solvation = 47.042062 kcal Electronic energy + Delta-G solvation = -31495.759933 eV Core-core repulsion = 27527.179191 eV Total energy + Delta-G solvation = -3968.580743 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -44.75003 -39.42058 -38.30369 -35.07148 -34.41373 -33.52632 -33.16154 -32.13868 -29.96021 -28.68894 -28.30568 -27.26821 -26.12400 -25.42384 -24.52939 -22.89622 -22.09798 -20.52247 -20.18872 -19.66260 -17.85202 -17.66374 -17.54649 -16.67797 -15.93893 -15.59902 -15.37958 -14.54044 -14.27455 -13.89998 -13.83637 -13.58339 -13.48241 -13.36941 -13.19676 -13.12750 -13.04212 -12.76053 -12.64525 -12.41177 -12.29641 -12.01044 -11.58456 -11.21834 -11.19144 -11.03952 -10.86110 -10.82195 -10.50232 -10.43212 -10.18902 -10.10581 -10.02209 -9.77545 -9.67172 -9.58092 -9.34265 -9.26885 -9.21817 -8.52531 -8.22973 -6.49011 -5.73659 -3.38064 1.39268 2.05471 2.75765 2.96909 3.28672 3.35316 3.39222 3.65889 4.27730 4.36264 4.41809 4.98485 5.03179 5.22951 5.25016 5.30669 5.36705 5.44895 5.51407 5.62473 5.66581 5.69845 5.75131 5.81487 5.88219 5.92432 5.99567 6.06526 6.15920 6.26758 6.29108 6.42052 6.47612 6.48681 6.60708 6.64577 6.67060 6.86541 6.88736 6.93633 7.04471 7.23563 7.38964 7.50672 7.75493 7.80300 7.92925 8.03766 8.33028 8.50469 8.56574 9.20356 9.77523 10.36737 11.21379 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.013541 B = 0.004575 C = 0.003765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2067.239065 B = 6118.723863 C = 7435.373063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.063 3.937 3 N -0.362 5.362 4 O 0.092 5.908 5 C 0.008 3.992 6 C -0.074 4.074 7 C -0.240 4.240 8 C 0.591 3.409 9 O -0.537 6.537 10 N -0.686 5.686 11 C 0.133 3.867 12 C 0.159 3.841 13 H 0.030 0.970 14 C -0.130 4.130 15 C -0.098 4.098 16 C -0.073 4.073 17 C -0.133 4.133 18 C -0.104 4.104 19 C 0.165 3.835 20 N -0.583 5.583 21 C -0.262 4.262 22 H 0.080 0.920 23 C 0.013 3.987 24 N -0.886 5.886 25 Si 0.884 3.116 26 H -0.280 1.280 27 H -0.293 1.293 28 H -0.279 1.279 29 H 0.093 0.907 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.092 0.908 33 H 0.087 0.913 34 H 0.092 0.908 35 H 0.408 0.592 36 H 0.054 0.946 37 H 0.081 0.919 38 H 0.068 0.932 39 H 0.043 0.957 40 H 0.044 0.956 41 H 0.042 0.958 42 H 0.052 0.948 43 H 0.038 0.962 44 H 0.039 0.961 45 H 0.061 0.939 46 H -0.002 1.002 47 H 0.081 0.919 48 H -0.009 1.009 49 H 0.110 0.890 50 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.613 1.097 1.120 10.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.099 4.099 3 N -0.069 5.069 4 O 0.031 5.969 5 C -0.056 4.056 6 C -0.131 4.131 7 C -0.248 4.248 8 C 0.375 3.625 9 O -0.415 6.415 10 N -0.337 5.337 11 C 0.010 3.990 12 C 0.052 3.948 13 H 0.047 0.953 14 C -0.169 4.169 15 C -0.136 4.136 16 C -0.075 4.075 17 C -0.191 4.191 18 C -0.161 4.161 19 C 0.040 3.960 20 N -0.306 5.306 21 C -0.391 4.391 22 H 0.097 0.903 23 C -0.186 4.186 24 N -0.531 5.531 25 Si 0.714 3.286 26 H -0.206 1.206 27 H -0.219 1.219 28 H -0.205 1.205 29 H 0.112 0.888 30 H 0.098 0.902 31 H 0.106 0.894 32 H 0.111 0.889 33 H 0.106 0.894 34 H 0.111 0.889 35 H 0.244 0.756 36 H 0.072 0.928 37 H 0.099 0.901 38 H 0.087 0.913 39 H 0.062 0.938 40 H 0.063 0.937 41 H 0.060 0.940 42 H 0.071 0.929 43 H 0.057 0.943 44 H 0.058 0.942 45 H 0.080 0.920 46 H 0.017 0.983 47 H 0.099 0.901 48 H 0.008 0.992 49 H 0.128 0.872 50 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 10.225 1.958 0.371 10.418 hybrid contribution -0.742 -0.037 -0.200 0.769 sum 9.483 1.921 0.171 9.677 Atomic orbital electron populations 1.20488 0.85121 1.04368 1.04556 1.24798 0.98553 0.86543 1.00020 1.73575 0.89100 1.23373 1.20901 1.84493 1.21599 1.22541 1.68266 1.24518 0.97286 0.83840 0.99947 1.20397 0.88983 0.99167 1.04545 1.22081 0.92670 0.95777 1.14231 1.16794 0.77626 0.83760 0.84332 1.90789 1.52735 1.66505 1.31465 1.46031 1.68087 1.10162 1.09374 1.21446 0.99627 0.78585 0.99348 1.20875 0.90379 0.91400 0.92164 0.95285 1.22007 0.99358 0.97082 0.98492 1.21468 0.97397 0.98361 0.96385 1.20857 0.93618 0.98539 0.94436 1.21767 1.00444 0.99496 0.97351 1.21730 1.01289 0.94673 0.98452 1.21120 0.98853 0.91191 0.84869 1.44128 1.21888 1.42796 1.21777 1.19561 0.90105 1.07911 1.21571 0.90277 1.25300 0.97302 0.97491 0.98547 1.69893 1.02840 1.35805 1.44515 0.86765 0.78237 0.82179 0.81426 1.20645 1.21943 1.20547 0.88820 0.90200 0.89415 0.88908 0.89380 0.88919 0.75554 0.92778 0.90076 0.91340 0.93811 0.93678 0.93961 0.92915 0.94295 0.94207 0.92045 0.98311 0.90062 0.99157 0.87201 0.93778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.47 9.58 36.01 0.35 -1.12 16 2 C 0.06 1.06 7.59 -79.76 -0.61 0.45 16 3 N -0.36 -5.90 12.01 34.78 0.42 -5.48 16 4 O 0.09 1.33 11.06 18.67 0.21 1.53 16 5 C 0.01 0.10 7.55 -34.63 -0.26 -0.16 16 6 C -0.07 -0.65 10.33 36.01 0.37 -0.28 16 7 C -0.24 -3.93 6.25 -102.89 -0.64 -4.57 16 8 C 0.59 10.74 7.47 -12.53 -0.09 10.65 16 9 O -0.54 -11.49 17.06 5.27 0.09 -11.40 16 10 N -0.69 -11.81 3.21 -61.39 -0.20 -12.01 16 11 C 0.13 2.37 4.61 -4.04 -0.02 2.35 16 12 C 0.16 2.88 2.97 -67.60 -0.20 2.68 16 13 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 14 C -0.13 -2.23 5.04 -26.61 -0.13 -2.36 16 15 C -0.10 -1.68 4.71 -26.69 -0.13 -1.81 16 16 C -0.07 -1.39 0.77 -154.39 -0.12 -1.51 16 17 C -0.13 -2.24 8.48 37.16 0.32 -1.92 16 18 C -0.10 -2.18 6.69 37.16 0.25 -1.94 16 19 C 0.16 3.52 4.69 -3.71 -0.02 3.51 16 20 N -0.58 -12.41 2.42 -164.77 -0.40 -12.81 16 21 C -0.26 -6.10 8.00 -15.06 -0.12 -6.22 16 22 H 0.08 1.79 4.58 -52.49 -0.24 1.55 16 23 C 0.01 0.31 5.24 -17.43 -0.09 0.22 16 24 N -0.89 -22.30 7.20 55.49 0.40 -21.90 16 25 Si 0.88 20.05 27.32 -169.99 -4.64 15.41 16 26 H -0.28 -6.49 6.88 56.52 0.39 -6.10 16 27 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 28 H -0.28 -6.03 6.54 56.52 0.37 -5.66 16 29 H 0.09 1.56 7.47 -51.93 -0.39 1.17 16 30 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 31 H 0.09 1.61 6.64 -51.93 -0.34 1.27 16 32 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.09 0.81 8.11 -51.93 -0.42 0.38 16 35 H 0.41 6.81 7.59 -40.82 -0.31 6.50 16 36 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 37 H 0.08 1.71 7.78 -51.93 -0.40 1.31 16 38 H 0.07 1.31 6.33 -51.93 -0.33 0.98 16 39 H 0.04 0.65 8.14 -51.94 -0.42 0.23 16 40 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.04 0.62 8.14 -51.92 -0.42 0.20 16 45 H 0.06 1.44 5.83 -51.93 -0.30 1.14 16 46 H 0.00 -0.04 8.14 -51.93 -0.42 -0.46 16 47 H 0.08 1.86 6.22 -51.93 -0.32 1.54 16 48 H -0.01 -0.20 8.14 -51.93 -0.42 -0.62 16 49 H 0.11 2.69 5.47 -51.93 -0.28 2.41 16 50 H 0.25 6.38 8.31 -40.82 -0.34 6.04 16 LS Contribution 380.95 15.07 5.74 5.74 Total: -1.00 -27.13 380.95 -7.56 -34.69 By element: Atomic # 1 Polarization: 16.29 SS G_CDS: -8.02 Total: 8.26 kcal Atomic # 6 Polarization: -0.88 SS G_CDS: -1.15 Total: -2.03 kcal Atomic # 7 Polarization: -52.42 SS G_CDS: 0.22 Total: -52.20 kcal Atomic # 8 Polarization: -10.17 SS G_CDS: 0.30 Total: -9.87 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -4.64 Total: 15.41 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -27.13 -7.56 -34.69 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089607049.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.729 kcal (2) G-P(sol) polarization free energy of solvation -27.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.686 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds