Wall clock time and date at job start Tue Mar 31 2020 20:32:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30618 * 125.42150 * 2 1 4 4 C 1.33692 * 108.99679 * 179.75417 * 3 2 1 5 5 C 1.50701 * 126.27351 * 180.26721 * 4 3 2 6 6 C 1.36335 * 107.45232 * 0.43251 * 4 3 2 7 7 C 1.46723 * 126.64310 * 179.84085 * 6 4 3 8 8 O 1.21674 * 120.00183 * 359.71193 * 7 6 4 9 9 N 1.34782 * 119.99861 * 179.71175 * 7 6 4 10 10 C 1.46495 * 119.99981 * 180.02562 * 9 7 6 11 11 C 1.52999 * 109.47067 * 179.97438 * 10 9 7 12 12 H 1.08997 * 109.58752 * 299.88565 * 11 10 9 13 13 C 1.53190 * 109.70551 * 179.53033 * 11 10 9 14 14 C 1.53041 * 109.31674 * 185.50735 * 13 11 10 15 15 C 1.53041 * 109.53407 * 61.36601 * 14 13 11 16 16 C 1.53002 * 109.49761 * 178.68642 * 15 14 13 17 17 C 1.53001 * 109.50289 * 58.58832 * 15 14 13 18 18 C 1.53191 * 109.31340 * 298.63550 * 15 14 13 19 19 N 1.46920 * 108.77739 * 54.63486 * 18 15 14 20 20 C 1.36939 * 120.63338 * 126.36915 * 19 18 15 21 21 H 1.08001 * 120.00236 * 211.05933 * 20 19 18 22 22 C 1.38813 * 119.99811 * 31.05131 * 20 19 18 23 23 N 1.31624 * 120.00075 * 14.14566 * 22 20 19 24 24 Si 1.86800 * 120.00187 * 194.14279 * 22 20 19 25 25 H 1.48499 * 109.46883 * 60.00383 * 24 22 20 26 26 H 1.48498 * 109.46987 * 180.02562 * 24 22 20 27 27 H 1.48499 * 109.47103 * 299.99983 * 24 22 20 28 28 O 1.33661 * 125.42968 * 180.02562 * 2 1 3 29 29 H 1.09001 * 109.46461 * 269.97078 * 1 2 3 30 30 H 1.08991 * 109.47404 * 29.97378 * 1 2 3 31 31 H 1.09000 * 109.46862 * 149.97543 * 1 2 3 32 32 H 1.08992 * 109.47538 * 270.18934 * 5 4 3 33 33 H 1.09002 * 109.46899 * 30.19643 * 5 4 3 34 34 H 1.09009 * 109.46905 * 150.18758 * 5 4 3 35 35 H 0.96999 * 120.00213 * 359.97438 * 9 7 6 36 36 H 1.09005 * 109.47530 * 60.00076 * 10 9 7 37 37 H 1.08994 * 109.47471 * 299.99675 * 10 9 7 38 38 H 1.09000 * 109.49702 * 305.46135 * 13 11 10 39 39 H 1.09000 * 109.49984 * 65.55581 * 13 11 10 40 40 H 1.09000 * 109.45897 * 301.34677 * 14 13 11 41 41 H 1.08999 * 109.46140 * 181.37951 * 14 13 11 42 42 H 1.08999 * 109.47641 * 179.83963 * 16 15 14 43 43 H 1.09002 * 109.47062 * 299.83672 * 16 15 14 44 44 H 1.08998 * 109.47382 * 59.83243 * 16 15 14 45 45 H 1.09003 * 109.46644 * 300.16043 * 17 15 14 46 46 H 1.09008 * 109.46889 * 60.15590 * 17 15 14 47 47 H 1.08991 * 109.47340 * 180.15935 * 17 15 14 48 48 H 1.09003 * 109.58642 * 294.84623 * 18 15 14 49 49 H 1.08996 * 109.70661 * 174.49579 * 18 15 14 50 50 H 0.96996 * 120.00268 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2641 1.0644 0.0000 4 6 3.5464 0.6864 0.0054 5 6 4.7451 1.5997 0.0130 6 6 3.5709 -0.6767 -0.0009 7 6 4.7637 -1.5311 -0.0015 8 8 5.8719 -1.0288 -0.0013 9 7 4.6318 -2.8725 -0.0023 10 6 5.8227 -3.7256 -0.0024 11 6 5.3973 -5.1952 -0.0027 12 1 4.8041 -5.4041 0.8875 13 6 6.6389 -6.0924 -0.0146 14 6 6.2062 -7.5538 -0.1535 15 6 5.4608 -7.7432 -1.4766 16 6 5.0572 -9.2111 -1.6298 17 6 6.3711 -7.3393 -2.6381 18 6 4.2058 -6.8648 -1.4813 19 7 4.5990 -5.4767 -1.2037 20 6 4.2291 -4.4644 -2.0485 21 1 4.8658 -3.6002 -2.1671 22 6 3.0358 -4.5492 -2.7526 23 7 2.1335 -5.4453 -2.4129 24 14 2.7103 -3.3915 -4.1820 25 1 3.7541 -3.5823 -5.2209 26 1 1.3749 -3.6841 -4.7617 27 1 2.7431 -1.9875 -3.6992 28 8 2.2819 -1.0891 -0.0005 29 1 -0.3632 -0.0005 1.0277 30 1 -0.3634 0.8901 -0.5134 31 1 -0.3633 -0.8898 -0.5142 32 1 5.0371 1.8246 -1.0127 33 1 4.4933 2.5254 0.5305 34 1 5.5721 1.1095 0.5270 35 1 3.7484 -3.2730 -0.0022 36 1 6.4171 -3.5200 0.8879 37 1 6.4176 -3.5190 -0.8920 38 1 7.2764 -5.8202 -0.8558 39 1 7.1901 -5.9632 0.9168 40 1 5.5488 -7.8181 0.6748 41 1 7.0866 -8.1963 -0.1376 42 1 4.5239 -9.3451 -2.5709 43 1 5.9505 -9.8357 -1.6264 44 1 4.4100 -9.4983 -0.8012 45 1 6.6592 -6.2939 -2.5274 46 1 7.2640 -7.9646 -2.6343 47 1 5.8388 -7.4718 -3.5800 48 1 3.5153 -7.2099 -0.7117 49 1 3.7225 -6.9195 -2.4567 50 1 1.2995 -5.5043 -2.9046 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089620950.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:32:51 Heat of formation + Delta-G solvation = -5.905764 kcal Electronic energy + Delta-G solvation = -31114.221899 eV Core-core repulsion = 27143.345166 eV Total energy + Delta-G solvation = -3970.876733 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -43.18571 -39.32643 -38.39114 -35.43527 -34.87405 -33.24200 -32.64358 -32.14777 -30.03397 -29.23314 -28.21519 -26.64460 -26.53292 -25.52143 -23.60368 -22.32527 -21.76561 -21.38072 -20.19248 -19.97699 -17.94345 -17.80348 -16.80578 -16.33305 -15.64090 -15.48119 -15.44349 -14.37377 -14.16248 -14.04810 -13.96311 -13.74765 -13.56514 -13.32314 -13.19182 -13.00560 -12.95640 -12.83141 -12.60348 -12.44811 -12.21428 -11.98572 -11.71246 -11.43481 -11.32580 -11.17691 -10.88883 -10.83424 -10.79531 -10.67437 -10.65751 -10.44956 -10.15719 -10.12300 -9.83036 -9.72243 -9.46261 -9.30314 -8.75310 -8.55196 -8.24765 -6.68278 -5.88419 -3.34130 1.10774 2.58022 2.68365 3.30594 3.35532 3.40211 3.49648 3.70662 4.06469 4.39559 4.89911 5.03738 5.15751 5.26328 5.29523 5.30469 5.42539 5.44395 5.52221 5.58740 5.71676 5.73394 5.78172 5.82840 5.85172 5.98371 6.03956 6.05290 6.12051 6.14093 6.20335 6.29194 6.33124 6.41368 6.44758 6.45622 6.48320 6.48903 6.62684 6.87964 6.88625 6.94603 7.05159 7.09978 7.35106 7.62978 7.73047 7.74798 8.09779 8.36445 8.59933 9.12315 9.73702 10.31709 11.18124 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.013376 B = 0.004311 C = 0.003713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2092.836179 B = 6493.172862 C = 7539.037455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.210 3.790 3 N -0.494 5.494 4 C 0.064 3.936 5 C -0.075 4.075 6 C -0.099 4.099 7 C 0.598 3.402 8 O -0.539 6.539 9 N -0.677 5.677 10 C 0.134 3.866 11 C 0.160 3.840 12 H 0.032 0.968 13 C -0.129 4.129 14 C -0.095 4.095 15 C -0.095 4.095 16 C -0.133 4.133 17 C -0.124 4.124 18 C 0.188 3.812 19 N -0.584 5.584 20 C -0.253 4.253 21 H 0.067 0.933 22 C 0.014 3.986 23 N -0.896 5.896 24 Si 0.889 3.111 25 H -0.283 1.283 26 H -0.290 1.290 27 H -0.284 1.284 28 O -0.176 6.176 29 H 0.095 0.905 30 H 0.101 0.899 31 H 0.093 0.907 32 H 0.077 0.923 33 H 0.071 0.929 34 H 0.094 0.906 35 H 0.420 0.580 36 H 0.060 0.940 37 H 0.070 0.930 38 H 0.066 0.934 39 H 0.051 0.949 40 H 0.052 0.948 41 H 0.045 0.955 42 H 0.050 0.950 43 H 0.041 0.959 44 H 0.047 0.953 45 H 0.065 0.935 46 H 0.030 0.970 47 H 0.044 0.956 48 H 0.017 0.983 49 H 0.085 0.915 50 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.200 2.663 5.839 6.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.004 3.996 3 N -0.225 5.225 4 C -0.061 4.061 5 C -0.132 4.132 6 C -0.155 4.155 7 C 0.383 3.617 8 O -0.420 6.420 9 N -0.326 5.326 10 C 0.010 3.990 11 C 0.053 3.947 12 H 0.049 0.951 13 C -0.169 4.169 14 C -0.133 4.133 15 C -0.097 4.097 16 C -0.191 4.191 17 C -0.181 4.181 18 C 0.063 3.937 19 N -0.308 5.308 20 C -0.382 4.382 21 H 0.085 0.915 22 C -0.186 4.186 23 N -0.539 5.539 24 Si 0.719 3.281 25 H -0.209 1.209 26 H -0.215 1.215 27 H -0.211 1.211 28 O -0.062 6.062 29 H 0.113 0.887 30 H 0.119 0.881 31 H 0.112 0.888 32 H 0.096 0.904 33 H 0.090 0.910 34 H 0.113 0.887 35 H 0.259 0.741 36 H 0.078 0.922 37 H 0.089 0.911 38 H 0.084 0.916 39 H 0.069 0.931 40 H 0.071 0.929 41 H 0.064 0.936 42 H 0.069 0.931 43 H 0.060 0.940 44 H 0.067 0.933 45 H 0.084 0.916 46 H 0.050 0.950 47 H 0.063 0.937 48 H 0.035 0.965 49 H 0.103 0.897 50 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 1.519 3.480 5.760 6.899 hybrid contribution -0.576 -0.407 -0.974 1.202 sum 0.943 3.073 4.785 5.765 Atomic orbital electron populations 1.20332 0.81162 1.05494 1.04779 1.26433 0.96657 0.78838 0.97661 1.70267 1.01670 1.30070 1.20491 1.21957 0.93333 0.91359 0.99404 1.20310 0.92376 0.97080 1.03427 1.23085 0.82624 0.95107 1.14661 1.16319 0.85104 0.82182 0.78084 1.90780 1.23647 1.74294 1.53263 1.45972 1.12149 1.04290 1.70193 1.21391 0.86821 0.89711 1.01082 1.20738 0.92093 0.90644 0.91269 0.95073 1.21999 0.98315 0.95920 1.00676 1.21406 0.98743 0.95699 0.97458 1.21240 0.98895 0.95111 0.94405 1.21758 1.00045 0.96098 1.01233 1.21701 0.97464 1.01516 0.97461 1.20795 0.90049 0.81597 1.01305 1.44013 1.61253 1.03265 1.22257 1.19084 1.00554 1.00127 1.18471 0.91504 1.25009 0.95246 0.98199 1.00097 1.69987 1.07042 1.36604 1.40274 0.86581 0.77215 0.80942 0.83396 1.20905 1.21541 1.21057 1.84532 1.16183 1.36848 1.68648 0.88672 0.88077 0.88778 0.90399 0.90975 0.88713 0.74110 0.92218 0.91125 0.91552 0.93069 0.92936 0.93602 0.93054 0.93959 0.93342 0.91593 0.95045 0.93660 0.96506 0.89660 0.93557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.63 10.51 36.01 0.38 -0.25 16 2 C 0.21 3.35 8.32 -12.79 -0.11 3.24 16 3 N -0.49 -8.45 11.26 -7.07 -0.08 -8.53 16 4 C 0.06 1.13 7.16 -82.47 -0.59 0.54 16 5 C -0.07 -1.10 9.87 36.01 0.36 -0.74 16 6 C -0.10 -1.90 7.18 -36.84 -0.26 -2.17 16 7 C 0.60 11.87 7.79 -12.83 -0.10 11.77 16 8 O -0.54 -11.12 14.79 5.21 0.08 -11.04 16 9 N -0.68 -13.22 3.84 -61.61 -0.24 -13.46 16 10 C 0.13 2.44 4.44 -4.04 -0.02 2.42 16 11 C 0.16 2.96 3.00 -67.60 -0.20 2.75 16 12 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 13 C -0.13 -2.07 5.04 -26.61 -0.13 -2.20 16 14 C -0.10 -1.50 4.71 -26.69 -0.13 -1.63 16 15 C -0.09 -1.65 0.77 -154.39 -0.12 -1.77 16 16 C -0.13 -2.06 8.48 37.16 0.32 -1.75 16 17 C -0.12 -2.17 7.99 37.16 0.30 -1.87 16 18 C 0.19 4.05 3.95 -3.71 -0.01 4.03 16 19 N -0.58 -12.71 2.41 -164.78 -0.40 -13.11 16 20 C -0.25 -6.14 6.97 -15.06 -0.10 -6.24 16 21 H 0.07 1.69 5.86 -52.49 -0.31 1.38 16 22 C 0.01 0.37 4.96 -17.43 -0.09 0.28 16 23 N -0.90 -23.77 11.24 55.49 0.62 -23.15 16 24 Si 0.89 21.24 29.58 -169.99 -5.03 16.22 16 25 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 26 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 27 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 28 O -0.18 -3.29 10.57 4.44 0.05 -3.25 16 29 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.10 0.89 8.14 -51.93 -0.42 0.46 16 31 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.09 1.43 6.47 -51.92 -0.34 1.09 16 35 H 0.42 8.80 7.19 -40.82 -0.29 8.51 16 36 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 37 H 0.07 1.39 7.42 -51.93 -0.39 1.00 16 38 H 0.07 1.10 6.33 -51.93 -0.33 0.77 16 39 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 43 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 44 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 45 H 0.07 1.25 5.97 -51.93 -0.31 0.94 16 46 H 0.03 0.48 8.14 -51.92 -0.42 0.05 16 47 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 48 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 49 H 0.09 2.11 6.19 -51.93 -0.32 1.79 16 50 H 0.25 6.70 8.31 -40.82 -0.34 6.36 16 LS Contribution 390.16 15.07 5.88 5.88 Total: -1.00 -28.53 390.16 -7.82 -36.34 By element: Atomic # 1 Polarization: 15.87 SS G_CDS: -8.18 Total: 7.69 kcal Atomic # 6 Polarization: 6.93 SS G_CDS: -0.52 Total: 6.40 kcal Atomic # 7 Polarization: -58.16 SS G_CDS: -0.09 Total: -58.25 kcal Atomic # 8 Polarization: -14.41 SS G_CDS: 0.12 Total: -14.29 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.03 Total: 16.22 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -28.53 -7.82 -36.34 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089620950.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.438 kcal (2) G-P(sol) polarization free energy of solvation -28.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds