Wall clock time and date at job start Tue Mar 31 2020 19:59:59
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50694 * 1
3 3 N 1.30126 * 126.70439 * 2 1
4 4 O 1.20888 * 111.98169 * 180.02562 * 3 2 1
5 5 C 1.34640 * 111.46952 * 359.97438 * 4 3 2
6 6 C 1.47519 * 126.94461 * 179.97438 * 5 4 3
7 7 O 1.21576 * 119.99757 * 180.02562 * 6 5 4
8 8 N 1.34771 * 119.99850 * 0.02909 * 6 5 4
9 9 C 1.46500 * 119.99616 * 179.97438 * 8 6 5
10 10 C 1.53009 * 109.46868 * 180.02562 * 9 8 6
11 11 H 1.09003 * 109.69733 * 60.30462 * 10 9 8
12 12 C 1.53191 * 109.58568 * 180.65745 * 10 9 8
13 13 C 1.53042 * 109.31363 * 174.42100 * 12 10 9
14 14 C 1.53042 * 109.53528 * 298.64014 * 13 12 10
15 15 C 1.53005 * 109.49221 * 181.31361 * 14 13 12
16 16 C 1.52995 * 109.49929 * 301.37434 * 14 13 12
17 17 C 1.52767 * 109.38566 * 61.23974 * 14 13 12
18 18 N 1.46924 * 109.58506 * 299.95088 * 10 9 8
19 19 C 1.36928 * 120.63331 * 6.58111 * 18 10 9
20 20 H 1.08006 * 120.00078 * 327.46072 * 19 18 10
21 21 C 1.38817 * 120.00213 * 147.45733 * 19 18 10
22 22 N 1.31613 * 119.99563 * 337.78478 * 21 19 18
23 23 Si 1.86795 * 119.99808 * 157.51159 * 21 19 18
24 24 H 1.48503 * 109.46682 * 180.27598 * 23 21 19
25 25 H 1.48503 * 109.47383 * 300.27123 * 23 21 19
26 26 H 1.48497 * 109.47354 * 60.27636 * 23 21 19
27 27 C 1.36829 * 106.11237 * 0.23073 * 5 4 3
28 28 C 1.50691 * 128.07770 * 179.77144 * 27 5 4
29 29 H 1.09001 * 109.47375 * 89.97474 * 1 2 3
30 30 H 1.09007 * 109.47311 * 209.97399 * 1 2 3
31 31 H 1.09004 * 109.47395 * 329.97386 * 1 2 3
32 32 H 0.96998 * 120.00214 * 359.97438 * 8 6 5
33 33 H 1.08995 * 109.47614 * 60.00071 * 9 8 6
34 34 H 1.09001 * 109.47279 * 299.99448 * 9 8 6
35 35 H 1.08999 * 109.49999 * 294.37710 * 12 10 9
36 36 H 1.09001 * 109.49393 * 54.44098 * 12 10 9
37 37 H 1.09004 * 109.45821 * 58.65403 * 13 12 10
38 38 H 1.08993 * 109.45898 * 178.63324 * 13 12 10
39 39 H 1.08994 * 109.47510 * 60.00298 * 15 14 13
40 40 H 1.09005 * 109.46812 * 179.97438 * 15 14 13
41 41 H 1.08997 * 109.47496 * 299.99939 * 15 14 13
42 42 H 1.09002 * 109.46613 * 60.00350 * 16 14 13
43 43 H 1.08996 * 109.47171 * 180.02562 * 16 14 13
44 44 H 1.08996 * 109.47645 * 300.00918 * 16 14 13
45 45 H 1.09001 * 109.50570 * 185.70535 * 17 14 13
46 46 H 1.08996 * 109.42925 * 65.42263 * 17 14 13
47 47 H 0.97004 * 120.00532 * 354.13460 * 22 21 19
48 48 H 1.09000 * 109.47236 * 89.99304 * 28 27 5
49 49 H 1.09000 * 109.47133 * 209.99423 * 28 27 5
50 50 H 1.09000 * 109.47016 * 329.99636 * 28 27 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5069 0.0000 0.0000
3 7 2.2847 1.0433 0.0000
4 8 3.4539 0.7360 -0.0005
5 6 3.6121 -0.6010 -0.0004
6 6 4.8870 -1.3430 -0.0014
7 8 4.8828 -2.5588 -0.0016
8 7 6.0565 -0.6732 -0.0020
9 6 7.3227 -1.4101 -0.0024
10 6 8.4891 -0.4198 -0.0025
11 1 8.4403 0.2053 0.8892
12 6 9.8146 -1.1876 -0.0195
13 6 10.9720 -0.1963 -0.1598
14 6 10.8371 0.5641 -1.4811
15 6 12.0124 1.5315 -1.6357
16 6 10.8372 -0.4295 -2.6445
17 6 9.5258 1.3478 -1.4836
18 7 8.4170 0.4260 -1.2016
19 6 7.3396 0.3526 -2.0435
20 1 6.8248 -0.5869 -2.1811
21 6 6.9089 1.4855 -2.7202
22 7 7.2118 2.6812 -2.2609
23 14 5.9061 1.3131 -4.2866
24 1 5.5784 2.6615 -4.8155
25 1 6.6928 0.5625 -5.2980
26 1 4.6498 0.5783 -3.9918
27 6 2.3512 -1.1326 -0.0050
28 6 1.9557 -2.5866 -0.0115
29 1 -0.3634 0.0005 -1.0277
30 1 -0.3634 -0.8903 0.5135
31 1 -0.3634 0.8898 0.5142
32 1 6.0599 0.2968 -0.0022
33 1 7.3779 -2.0371 -0.8923
34 1 7.3787 -2.0368 0.8877
35 1 9.9240 -1.7453 0.9106
36 1 9.8234 -1.8795 -0.8617
37 1 10.9476 0.5103 0.6698
38 1 11.9176 -0.7381 -0.1478
39 1 12.9472 0.9710 -1.6332
40 1 11.9162 2.0726 -2.5771
41 1 12.0114 2.2399 -0.8073
42 1 9.9992 -1.1177 -2.5345
43 1 10.7416 0.1125 -3.5853
44 1 11.7713 -0.9913 -2.6425
45 1 9.3788 1.8082 -2.4606
46 1 9.5635 2.1200 -0.7153
47 1 7.6616 2.7729 -1.4063
48 1 1.8584 -2.9414 1.0145
49 1 1.0025 -2.7015 -0.5276
50 1 2.7201 -3.1688 -0.5262
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001089656306.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 19:59:59
Heat of formation + Delta-G solvation = 13.972114 kcal
Electronic energy + Delta-G solvation = -31083.935400 eV
Core-core repulsion = 27113.920637 eV
Total energy + Delta-G solvation = -3970.014763 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 335.200 amu
Computer time = 1.18 seconds
Orbital eigenvalues (eV)
-46.02456 -40.99705 -40.06372 -36.95213 -36.34130 -35.26067 -34.01893 -33.44853
-31.56714 -30.02267 -29.41743 -28.62655 -28.09444 -27.25879 -25.55778 -24.05086
-23.47872 -22.79360 -21.87525 -21.05359 -19.54657 -19.33297 -18.86276 -18.53783
-17.20009 -17.05754 -16.85240 -16.04474 -15.70685 -15.59912 -15.48858 -15.18510
-14.85321 -14.71812 -14.58456 -14.46016 -14.04481 -14.01487 -13.86521 -13.75639
-13.65901 -13.48025 -13.23774 -13.12033 -12.80619 -12.70819 -12.56221 -12.34902
-12.25205 -12.12648 -12.04010 -11.78323 -11.65522 -11.37074 -11.31855 -11.05019
-10.99773 -10.82156 -10.57210 -10.42672 -9.95607 -8.75996 -8.05145 -5.31700
-0.28126 0.99033 1.50578 1.53148 1.62027 1.71358 1.94091 2.28776
2.61142 3.07078 3.28233 3.42530 3.51354 3.73407 3.90408 3.91593
3.94446 4.10505 4.20791 4.23379 4.35003 4.43999 4.58787 4.59839
4.66129 4.66380 4.73807 4.77108 4.77733 4.83995 4.87674 4.89140
4.98610 5.02304 5.06512 5.07561 5.09172 5.16537 5.25646 5.27968
5.30541 5.38331 5.45068 5.52506 5.59538 5.75051 6.03357 6.36827
6.53932 6.92901 7.06040 7.15107 7.85739 8.33891 9.13823
Molecular weight = 335.20amu
Principal moments of inertia in cm(-1)
A = 0.014665 B = 0.004076 C = 0.003541
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1908.820608 B = 6867.764453 C = 7904.853048
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.072 4.072
2 C 0.014 3.986
3 N -0.374 5.374
4 O 0.091 5.909
5 C -0.104 4.104
6 C 0.596 3.404
7 O -0.548 6.548
8 N -0.676 5.676
9 C 0.140 3.860
10 C 0.159 3.841
11 H 0.030 0.970
12 C -0.123 4.123
13 C -0.091 4.091
14 C -0.086 4.086
15 C -0.131 4.131
16 C -0.118 4.118
17 C 0.177 3.823
18 N -0.602 5.602
19 C -0.318 4.318
20 H 0.048 0.952
21 C -0.056 4.056
22 N -0.939 5.939
23 Si 1.082 2.918
24 H -0.296 1.296
25 H -0.283 1.283
26 H -0.294 1.294
27 C -0.125 4.125
28 C -0.078 4.078
29 H 0.096 0.904
30 H 0.112 0.888
31 H 0.084 0.916
32 H 0.412 0.588
33 H 0.054 0.946
34 H 0.083 0.917
35 H 0.083 0.917
36 H 0.062 0.938
37 H 0.054 0.946
38 H 0.077 0.923
39 H 0.072 0.928
40 H 0.041 0.959
41 H 0.051 0.949
42 H 0.047 0.953
43 H 0.028 0.972
44 H 0.062 0.938
45 H 0.035 0.965
46 H -0.002 1.002
47 H 0.259 0.741
48 H 0.094 0.906
49 H 0.103 0.897
50 H 0.071 0.929
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.035 -9.182 6.639 11.731
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.129 4.129
2 C -0.145 4.145
3 N -0.080 5.080
4 O 0.024 5.976
5 C -0.169 4.169
6 C 0.380 3.620
7 O -0.429 6.429
8 N -0.324 5.324
9 C 0.017 3.983
10 C 0.053 3.947
11 H 0.047 0.953
12 C -0.162 4.162
13 C -0.129 4.129
14 C -0.088 4.088
15 C -0.188 4.188
16 C -0.175 4.175
17 C 0.051 3.949
18 N -0.327 5.327
19 C -0.448 4.448
20 H 0.065 0.935
21 C -0.255 4.255
22 N -0.582 5.582
23 Si 0.911 3.089
24 H -0.222 1.222
25 H -0.209 1.209
26 H -0.221 1.221
27 C -0.130 4.130
28 C -0.134 4.134
29 H 0.114 0.886
30 H 0.131 0.869
31 H 0.103 0.897
32 H 0.248 0.752
33 H 0.073 0.927
34 H 0.101 0.899
35 H 0.101 0.899
36 H 0.081 0.919
37 H 0.073 0.927
38 H 0.096 0.904
39 H 0.090 0.910
40 H 0.060 0.940
41 H 0.070 0.930
42 H 0.066 0.934
43 H 0.047 0.953
44 H 0.081 0.919
45 H 0.054 0.946
46 H 0.016 0.984
47 H 0.070 0.930
48 H 0.112 0.888
49 H 0.122 0.878
50 H 0.090 0.910
Dipole moment (debyes) X Y Z Total
from point charges -3.924 -7.891 5.387 10.329
hybrid contribution 0.679 -0.395 0.816 1.133
sum -3.245 -8.286 6.203 10.848
Atomic orbital electron populations
1.20425 0.81932 1.05621 1.04960 1.24288 1.01096 0.87184 1.01907
1.73737 0.89539 1.25858 1.18895 1.85004 1.21744 1.22552 1.68283
1.24227 0.97855 0.83970 1.10896 1.16607 0.81606 0.85993 0.77813
1.90739 1.86531 1.12190 1.53457 1.45998 1.05035 1.11531 1.69879
1.21397 0.81490 0.94088 1.01293 1.20910 0.93361 0.91186 0.89210
0.95283 1.21936 0.94012 0.98017 1.02243 1.21396 0.98203 0.97528
0.95767 1.20979 0.95319 0.96305 0.96177 1.21738 0.97474 0.98709
1.00927 1.21632 1.00954 0.98515 0.96448 1.20698 0.86438 0.90620
0.97127 1.44217 1.18216 1.46291 1.23983 1.19791 1.08172 0.94456
1.22400 0.93482 1.26322 1.00945 0.92441 1.05811 1.70850 1.42292
1.23847 1.21162 0.83262 0.75338 0.74893 0.75424 1.22218 1.20921
1.22079 1.21939 0.89384 1.00080 1.01590 1.20381 1.03225 0.85537
1.04280 0.88592 0.86902 0.89724 0.75158 0.92726 0.89853 0.89883
0.91915 0.92705 0.90431 0.90953 0.94013 0.92967 0.93396 0.95286
0.91866 0.94622 0.98372 0.93044 0.88764 0.87834 0.91034
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.07 -1.26 10.39 71.23 0.74 -0.52 16
2 C 0.01 0.41 7.31 43.55 0.32 0.73 16
3 N -0.37 -13.82 12.04 -48.87 -0.59 -14.41 16
4 O 0.09 3.69 11.04 65.85 0.73 4.42 16
5 C -0.10 -3.89 7.29 24.39 0.18 -3.71 16
6 C 0.60 23.22 7.82 86.69 0.68 23.90 16
7 O -0.55 -21.98 15.12 -3.95 -0.06 -22.04 16
8 N -0.68 -26.53 3.86 -466.30 -1.80 -28.33 16
9 C 0.14 5.01 4.43 86.38 0.38 5.40 16
10 C 0.16 5.71 3.02 44.98 0.14 5.85 16
11 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16
12 C -0.12 -3.55 5.03 30.67 0.15 -3.39 16
13 C -0.09 -2.55 4.71 30.62 0.14 -2.40 16
14 C -0.09 -2.84 0.77 -52.25 -0.04 -2.89 16
15 C -0.13 -3.72 8.48 71.98 0.61 -3.11 16
16 C -0.12 -3.93 7.98 71.98 0.57 -3.36 16
17 C 0.18 7.62 3.35 86.22 0.29 7.90 16
18 N -0.60 -26.37 2.22 -676.03 -1.50 -27.87 16
19 C -0.32 -15.89 6.79 84.04 0.57 -15.32 16
20 H 0.05 2.46 6.00 -2.91 -0.02 2.44 16
21 C -0.06 -3.04 4.73 84.86 0.40 -2.63 16
22 N -0.94 -54.57 12.57 21.65 0.27 -54.30 16
23 Si 1.08 52.26 29.97 68.60 2.06 54.31 16
24 H -0.30 -14.75 7.11 99.48 0.71 -14.04 16
25 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16
26 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16
27 C -0.13 -3.81 6.36 -19.45 -0.12 -3.94 16
28 C -0.08 -1.76 9.86 71.23 0.70 -1.06 16
29 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16
30 H 0.11 1.28 8.14 -2.38 -0.02 1.26 16
31 H 0.08 1.39 8.14 -2.38 -0.02 1.37 16
32 H 0.41 17.73 7.20 -92.71 -0.67 17.06 16
33 H 0.05 2.14 7.42 -2.39 -0.02 2.12 16
34 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16
35 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16
36 H 0.06 1.91 6.34 -2.39 -0.02 1.89 16
37 H 0.05 1.53 8.14 -2.38 -0.02 1.51 16
38 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16
39 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16
40 H 0.04 1.26 8.14 -2.38 -0.02 1.24 16
41 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16
42 H 0.05 1.77 5.98 -2.39 -0.01 1.76 16
43 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16
44 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16
45 H 0.04 1.81 6.60 -2.39 -0.02 1.79 16
46 H 0.00 -0.08 7.82 -2.39 -0.02 -0.10 16
47 H 0.26 15.16 6.70 -92.71 -0.62 14.54 16
48 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16
49 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16
50 H 0.07 1.94 6.73 -2.39 -0.02 1.92 16
Total: -1.00 -64.89 389.39 5.24 -59.65
By element:
Atomic # 1 Polarization: 26.70 SS G_CDS: 0.43 Total: 27.13 kcal
Atomic # 6 Polarization: -4.27 SS G_CDS: 5.71 Total: 1.45 kcal
Atomic # 7 Polarization: -121.29 SS G_CDS: -3.62 Total: -124.91 kcal
Atomic # 8 Polarization: -18.29 SS G_CDS: 0.67 Total: -17.62 kcal
Atomic # 14 Polarization: 52.26 SS G_CDS: 2.06 Total: 54.31 kcal
Total: -64.89 5.24 -59.65 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001089656306.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 73.621 kcal
(2) G-P(sol) polarization free energy of solvation -64.893 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.728 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.244 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.649 kcal
(6) G-S(sol) free energy of system = (1) + (5) 13.972 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.18 seconds