Wall clock time and date at job start Tue Mar 31 2020 20:00:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30132 * 126.70286 * 2 1 4 4 O 1.20896 * 111.98027 * 179.67144 * 3 2 1 5 5 C 1.34639 * 111.46707 * 0.49284 * 4 3 2 6 6 C 1.47514 * 126.94693 * 179.78853 * 5 4 3 7 7 O 1.21583 * 120.00545 * 179.68473 * 6 5 4 8 8 N 1.34780 * 119.99296 * 359.68483 * 6 5 4 9 9 C 1.46505 * 119.99668 * 180.02562 * 8 6 5 10 10 C 1.52996 * 109.46998 * 180.02562 * 9 8 6 11 11 H 1.08995 * 109.58834 * 299.18866 * 10 9 8 12 12 C 1.53192 * 109.70234 * 178.83323 * 10 9 8 13 13 C 1.53035 * 109.31518 * 185.50839 * 12 10 9 14 14 C 1.53036 * 109.53936 * 61.36223 * 13 12 10 15 15 C 1.53005 * 109.49676 * 58.58998 * 14 13 12 16 16 C 1.52999 * 109.50051 * 178.68413 * 14 13 12 17 17 C 1.53625 * 109.24489 * 298.51284 * 14 13 12 18 18 N 1.46924 * 109.58745 * 59.47388 * 10 9 8 19 19 C 1.36931 * 120.63217 * 353.51439 * 18 10 9 20 20 H 1.08007 * 119.99929 * 30.87737 * 19 18 10 21 21 C 1.38819 * 120.00241 * 210.87913 * 19 18 10 22 22 N 1.31615 * 119.99803 * 23.03082 * 21 19 18 23 23 Si 1.86797 * 119.99969 * 203.03356 * 21 19 18 24 24 H 1.48495 * 109.47023 * 179.97438 * 23 21 19 25 25 H 1.48500 * 109.47265 * 299.99816 * 23 21 19 26 26 H 1.48504 * 109.47051 * 59.99754 * 23 21 19 27 27 C 1.36825 * 106.11423 * 359.52543 * 5 4 3 28 28 C 1.50698 * 128.07916 * 180.24066 * 27 5 4 29 29 H 1.08993 * 109.47505 * 270.02942 * 1 2 3 30 30 H 1.09000 * 109.46582 * 30.03323 * 1 2 3 31 31 H 1.08999 * 109.46490 * 150.02839 * 1 2 3 32 32 H 0.96993 * 120.00657 * 359.97438 * 8 6 5 33 33 H 1.08999 * 109.46851 * 59.99739 * 9 8 6 34 34 H 1.09004 * 109.46849 * 300.00280 * 9 8 6 35 35 H 1.08999 * 109.50162 * 305.45710 * 12 10 9 36 36 H 1.09003 * 109.49770 * 65.55557 * 12 10 9 37 37 H 1.08998 * 109.46471 * 181.38849 * 13 12 10 38 38 H 1.09008 * 109.45819 * 301.34398 * 13 12 10 39 39 H 1.09004 * 109.46729 * 60.00311 * 15 14 13 40 40 H 1.08996 * 109.47303 * 180.02562 * 15 14 13 41 41 H 1.09000 * 109.46904 * 300.00264 * 15 14 13 42 42 H 1.09008 * 109.46968 * 60.00658 * 16 14 13 43 43 H 1.08998 * 109.47568 * 180.02562 * 16 14 13 44 44 H 1.08998 * 109.47675 * 300.00482 * 16 14 13 45 45 H 1.08997 * 109.74268 * 295.11835 * 17 14 13 46 46 H 1.08997 * 109.66535 * 174.54512 * 17 14 13 47 47 H 0.97001 * 119.99808 * 5.42903 * 22 21 19 48 48 H 1.08999 * 109.47105 * 90.00384 * 28 27 5 49 49 H 1.09005 * 109.47555 * 209.99932 * 28 27 5 50 50 H 1.08998 * 109.47269 * 330.00435 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2847 1.0433 0.0000 4 8 3.4540 0.7361 0.0064 5 6 3.6121 -0.6010 0.0010 6 6 4.8871 -1.3430 0.0016 7 8 4.8829 -2.5588 0.0020 8 7 6.0566 -0.6731 0.0018 9 6 7.3228 -1.4099 0.0019 10 6 8.4891 -0.4197 0.0028 11 1 8.4438 0.1990 -0.8934 12 6 9.8160 -1.1846 0.0323 13 6 10.9707 -0.1900 0.1716 14 6 10.8275 0.5796 1.4866 15 6 10.8226 -0.4059 2.6571 16 6 11.9999 1.5504 1.6406 17 6 9.5094 1.3686 1.4706 18 7 8.4091 0.4345 1.1956 19 6 7.3270 0.3655 2.0318 20 1 6.7963 -0.5675 2.1524 21 6 6.9120 1.4946 2.7247 22 7 7.2228 2.6926 2.2769 23 14 5.9128 1.3136 4.2925 24 1 5.5977 2.6588 4.8367 25 1 4.6499 0.5916 3.9940 26 1 6.6969 0.5464 5.2934 27 6 2.3514 -1.1325 0.0007 28 6 1.9558 -2.5867 0.0005 29 1 -0.3634 0.0005 1.0276 30 1 -0.3632 0.8897 -0.5144 31 1 -0.3632 -0.8903 -0.5134 32 1 6.0599 0.2969 0.0012 33 1 7.3784 -2.0367 -0.8881 34 1 7.3782 -2.0369 0.8919 35 1 9.8222 -1.8701 0.8798 36 1 9.9314 -1.7487 -0.8933 37 1 11.9176 -0.7298 0.1680 38 1 10.9492 0.5106 -0.6633 39 1 11.7577 -0.9661 2.6642 40 1 10.7201 0.1426 3.5934 41 1 9.9862 -1.0962 2.5473 42 1 12.0017 2.2530 0.8071 43 1 11.8978 2.0979 2.5775 44 1 12.9359 0.9918 1.6468 45 1 9.5456 2.1301 0.6917 46 1 9.3533 1.8417 2.4401 47 1 7.6728 2.7895 1.4231 48 1 1.8602 -2.9373 1.0282 49 1 1.0017 -2.7037 -0.5135 50 1 2.7193 -3.1709 -0.5131 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089656307.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:00:04 Heat of formation + Delta-G solvation = 30.573728 kcal Electronic energy + Delta-G solvation = -31086.380809 eV Core-core repulsion = 27117.085946 eV Total energy + Delta-G solvation = -3969.294863 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -44.73112 -39.46879 -38.54219 -35.56267 -35.00937 -33.50541 -32.61493 -32.10435 -29.83019 -28.92481 -28.27542 -27.31966 -26.72086 -25.46673 -24.13721 -22.40742 -22.08230 -21.55720 -20.28703 -19.64817 -17.96122 -17.93479 -17.52970 -16.88458 -15.71028 -15.52537 -15.46479 -14.43510 -14.22071 -14.07184 -13.81972 -13.67062 -13.57285 -13.50017 -13.41829 -13.11579 -12.95649 -12.85443 -12.70441 -12.50886 -12.30720 -12.13357 -11.92700 -11.58250 -11.42684 -11.28858 -10.96403 -10.81744 -10.80032 -10.69204 -10.34424 -10.11384 -9.98763 -9.92255 -9.82120 -9.76438 -9.63122 -9.25274 -9.13865 -8.57393 -8.30698 -6.89906 -6.07130 -3.31610 1.10450 2.19801 2.99012 3.40672 3.47415 3.49359 3.66341 3.70974 4.18751 4.51765 4.62338 4.95084 5.02724 5.07851 5.23621 5.33556 5.36386 5.38487 5.41522 5.52983 5.61991 5.62187 5.64464 5.69910 5.75226 5.84716 5.88758 5.95894 6.00160 6.05223 6.11604 6.18542 6.22607 6.31153 6.33008 6.35493 6.37779 6.41019 6.52785 6.73307 6.78891 6.83090 6.89205 6.96523 7.15559 7.20652 7.92133 8.00521 8.34976 8.51473 8.56328 9.03322 9.77271 10.23215 11.17192 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.014647 B = 0.004080 C = 0.003543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1911.231154 B = 6860.859866 C = 7900.327563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.001 3.999 3 N -0.346 5.346 4 O 0.128 5.872 5 C -0.072 4.072 6 C 0.595 3.405 7 O -0.537 6.537 8 N -0.670 5.670 9 C 0.136 3.864 10 C 0.161 3.839 11 H 0.030 0.970 12 C -0.129 4.129 13 C -0.096 4.096 14 C -0.089 4.089 15 C -0.125 4.125 16 C -0.136 4.136 17 C 0.167 3.833 18 N -0.592 5.592 19 C -0.350 4.350 20 H 0.060 0.940 21 C -0.012 4.012 22 N -0.908 5.908 23 Si 1.051 2.949 24 H -0.285 1.285 25 H -0.295 1.295 26 H -0.293 1.293 27 C -0.135 4.135 28 C -0.079 4.079 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.420 0.580 33 H 0.060 0.940 34 H 0.071 0.929 35 H 0.067 0.933 36 H 0.052 0.948 37 H 0.048 0.952 38 H 0.052 0.948 39 H 0.033 0.967 40 H 0.045 0.955 41 H 0.067 0.933 42 H 0.048 0.952 43 H 0.051 0.949 44 H 0.044 0.956 45 H 0.016 0.984 46 H 0.078 0.922 47 H 0.270 0.730 48 H 0.076 0.924 49 H 0.068 0.932 50 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.909 -6.927 -5.686 9.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.157 4.157 3 N -0.047 5.047 4 O 0.055 5.945 5 C -0.138 4.138 6 C 0.378 3.622 7 O -0.416 6.416 8 N -0.320 5.320 9 C 0.013 3.987 10 C 0.054 3.946 11 H 0.048 0.952 12 C -0.169 4.169 13 C -0.133 4.133 14 C -0.091 4.091 15 C -0.182 4.182 16 C -0.194 4.194 17 C 0.041 3.959 18 N -0.317 5.317 19 C -0.479 4.479 20 H 0.078 0.922 21 C -0.216 4.216 22 N -0.547 5.547 23 Si 0.881 3.119 24 H -0.211 1.211 25 H -0.222 1.222 26 H -0.220 1.220 27 C -0.140 4.140 28 C -0.136 4.136 29 H 0.099 0.901 30 H 0.095 0.905 31 H 0.099 0.901 32 H 0.259 0.741 33 H 0.078 0.922 34 H 0.090 0.910 35 H 0.085 0.915 36 H 0.070 0.930 37 H 0.066 0.934 38 H 0.071 0.929 39 H 0.052 0.948 40 H 0.065 0.935 41 H 0.086 0.914 42 H 0.067 0.933 43 H 0.071 0.929 44 H 0.063 0.937 45 H 0.034 0.966 46 H 0.096 0.904 47 H 0.082 0.918 48 H 0.095 0.905 49 H 0.087 0.913 50 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -3.850 -5.602 -4.419 8.108 hybrid contribution 0.709 -1.017 -1.072 1.639 sum -3.141 -6.619 -5.491 9.156 Atomic orbital electron populations 1.20131 0.85697 1.03597 1.03399 1.23455 0.99029 0.88363 1.04821 1.73749 0.89502 1.24304 1.17128 1.85044 1.20905 1.22005 1.66571 1.24156 0.97224 0.83812 1.08642 1.16499 0.81307 0.86048 0.78382 1.90766 1.86208 1.11888 1.52787 1.45964 1.04370 1.12045 1.69641 1.21357 0.81988 0.94300 1.01082 1.20721 0.91477 0.91431 0.90954 0.95201 1.21991 0.95861 0.98225 1.00823 1.21408 0.97067 0.97589 0.97286 1.21192 0.97003 0.96101 0.94761 1.21695 1.00257 0.98984 0.97258 1.21788 0.97362 0.98925 1.01294 1.21081 0.84290 0.90440 1.00096 1.44109 1.18930 1.44902 1.23716 1.19902 1.08258 0.96334 1.23430 0.92198 1.25653 0.99852 0.92163 1.03885 1.70790 1.39662 1.22787 1.21482 0.83706 0.75881 0.75545 0.76718 1.21061 1.22164 1.22013 1.21367 0.90366 0.98318 1.03973 1.20243 1.02015 0.88224 1.03110 0.90148 0.90510 0.90087 0.74059 0.92193 0.91039 0.91459 0.92971 0.93365 0.92929 0.94831 0.93537 0.91428 0.93310 0.92942 0.93697 0.96599 0.90402 0.91834 0.90546 0.91346 0.89284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.73 10.39 36.00 0.37 -0.36 16 2 C 0.00 0.02 7.31 -82.16 -0.60 -0.58 16 3 N -0.35 -6.31 12.04 33.52 0.40 -5.91 16 4 O 0.13 2.47 11.04 15.56 0.17 2.64 16 5 C -0.07 -1.32 7.29 -36.31 -0.26 -1.59 16 6 C 0.59 11.35 7.82 -12.48 -0.10 11.25 16 7 O -0.54 -10.75 15.11 5.29 0.08 -10.67 16 8 N -0.67 -12.77 3.80 -61.35 -0.23 -13.01 16 9 C 0.14 2.44 4.44 -4.04 -0.02 2.42 16 10 C 0.16 2.92 3.01 -67.60 -0.20 2.72 16 11 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 12 C -0.13 -2.03 5.04 -26.61 -0.13 -2.16 16 13 C -0.10 -1.48 4.71 -26.69 -0.13 -1.60 16 14 C -0.09 -1.52 0.77 -154.16 -0.12 -1.64 16 15 C -0.12 -2.16 7.99 37.16 0.30 -1.86 16 16 C -0.14 -2.05 8.48 37.16 0.32 -1.74 16 17 C 0.17 3.49 3.41 -3.48 -0.01 3.48 16 18 N -0.59 -12.65 2.23 -164.51 -0.37 -13.02 16 19 C -0.35 -8.46 6.84 -15.06 -0.10 -8.56 16 20 H 0.06 1.51 5.91 -52.48 -0.31 1.20 16 21 C -0.01 -0.30 4.72 -17.43 -0.08 -0.38 16 22 N -0.91 -25.07 12.50 55.49 0.69 -24.38 16 23 Si 1.05 24.92 29.98 -169.99 -5.10 19.82 16 24 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 25 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 26 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 27 C -0.14 -2.14 6.36 -103.98 -0.66 -2.80 16 28 C -0.08 -0.99 9.86 36.00 0.36 -0.64 16 29 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.08 0.64 7.65 -51.93 -0.40 0.25 16 32 H 0.42 8.60 7.16 -40.82 -0.29 8.31 16 33 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 34 H 0.07 1.39 7.46 -51.93 -0.39 1.01 16 35 H 0.07 1.10 6.34 -51.93 -0.33 0.77 16 36 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.05 0.81 8.14 -51.92 -0.42 0.39 16 39 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.07 1.28 5.97 -51.93 -0.31 0.97 16 42 H 0.05 0.71 8.14 -51.92 -0.42 0.29 16 43 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 44 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.02 0.35 7.82 -51.93 -0.41 -0.06 16 46 H 0.08 1.89 6.46 -51.93 -0.34 1.55 16 47 H 0.27 7.45 6.64 -40.82 -0.27 7.18 16 48 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 49 H 0.07 0.65 7.65 -51.93 -0.40 0.25 16 50 H 0.09 1.22 6.73 -51.93 -0.35 0.87 16 LS Contribution 388.11 15.07 5.85 5.85 Total: -1.00 -28.10 388.11 -7.66 -35.75 By element: Atomic # 1 Polarization: 15.02 SS G_CDS: -8.08 Total: 6.94 kcal Atomic # 6 Polarization: -2.95 SS G_CDS: -1.08 Total: -4.04 kcal Atomic # 7 Polarization: -56.81 SS G_CDS: 0.50 Total: -56.31 kcal Atomic # 8 Polarization: -8.28 SS G_CDS: 0.25 Total: -8.02 kcal Atomic # 14 Polarization: 24.92 SS G_CDS: -5.10 Total: 19.82 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -28.10 -7.66 -35.75 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089656307.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.328 kcal (2) G-P(sol) polarization free energy of solvation -28.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.754 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds