Wall clock time and date at job start Tue Mar 31 2020 20:00:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30132 * 126.70286 * 2 1 4 4 O 1.20896 * 111.98027 * 179.67144 * 3 2 1 5 5 C 1.34639 * 111.46707 * 0.49284 * 4 3 2 6 6 C 1.47514 * 126.94693 * 179.78853 * 5 4 3 7 7 O 1.21583 * 120.00545 * 179.68473 * 6 5 4 8 8 N 1.34780 * 119.99296 * 359.68483 * 6 5 4 9 9 C 1.46505 * 119.99668 * 180.02562 * 8 6 5 10 10 C 1.52996 * 109.46998 * 180.02562 * 9 8 6 11 11 H 1.08995 * 109.58834 * 299.18866 * 10 9 8 12 12 C 1.53192 * 109.70234 * 178.83323 * 10 9 8 13 13 C 1.53035 * 109.31518 * 185.50839 * 12 10 9 14 14 C 1.53036 * 109.53936 * 61.36223 * 13 12 10 15 15 C 1.53005 * 109.49676 * 58.58998 * 14 13 12 16 16 C 1.52999 * 109.50051 * 178.68413 * 14 13 12 17 17 C 1.53625 * 109.24489 * 298.51284 * 14 13 12 18 18 N 1.46924 * 109.58745 * 59.47388 * 10 9 8 19 19 C 1.36931 * 120.63217 * 353.51439 * 18 10 9 20 20 H 1.08007 * 119.99929 * 30.87737 * 19 18 10 21 21 C 1.38819 * 120.00241 * 210.87913 * 19 18 10 22 22 N 1.31615 * 119.99803 * 23.03082 * 21 19 18 23 23 Si 1.86797 * 119.99969 * 203.03356 * 21 19 18 24 24 H 1.48495 * 109.47023 * 179.97438 * 23 21 19 25 25 H 1.48500 * 109.47265 * 299.99816 * 23 21 19 26 26 H 1.48504 * 109.47051 * 59.99754 * 23 21 19 27 27 C 1.36825 * 106.11423 * 359.52543 * 5 4 3 28 28 C 1.50698 * 128.07916 * 180.24066 * 27 5 4 29 29 H 1.08993 * 109.47505 * 270.02942 * 1 2 3 30 30 H 1.09000 * 109.46582 * 30.03323 * 1 2 3 31 31 H 1.08999 * 109.46490 * 150.02839 * 1 2 3 32 32 H 0.96993 * 120.00657 * 359.97438 * 8 6 5 33 33 H 1.08999 * 109.46851 * 59.99739 * 9 8 6 34 34 H 1.09004 * 109.46849 * 300.00280 * 9 8 6 35 35 H 1.08999 * 109.50162 * 305.45710 * 12 10 9 36 36 H 1.09003 * 109.49770 * 65.55557 * 12 10 9 37 37 H 1.08998 * 109.46471 * 181.38849 * 13 12 10 38 38 H 1.09008 * 109.45819 * 301.34398 * 13 12 10 39 39 H 1.09004 * 109.46729 * 60.00311 * 15 14 13 40 40 H 1.08996 * 109.47303 * 180.02562 * 15 14 13 41 41 H 1.09000 * 109.46904 * 300.00264 * 15 14 13 42 42 H 1.09008 * 109.46968 * 60.00658 * 16 14 13 43 43 H 1.08998 * 109.47568 * 180.02562 * 16 14 13 44 44 H 1.08998 * 109.47675 * 300.00482 * 16 14 13 45 45 H 1.08997 * 109.74268 * 295.11835 * 17 14 13 46 46 H 1.08997 * 109.66535 * 174.54512 * 17 14 13 47 47 H 0.97001 * 119.99808 * 5.42903 * 22 21 19 48 48 H 1.08999 * 109.47105 * 90.00384 * 28 27 5 49 49 H 1.09005 * 109.47555 * 209.99932 * 28 27 5 50 50 H 1.08998 * 109.47269 * 330.00435 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2847 1.0433 0.0000 4 8 3.4540 0.7361 0.0064 5 6 3.6121 -0.6010 0.0010 6 6 4.8871 -1.3430 0.0016 7 8 4.8829 -2.5588 0.0020 8 7 6.0566 -0.6731 0.0018 9 6 7.3228 -1.4099 0.0019 10 6 8.4891 -0.4197 0.0028 11 1 8.4438 0.1990 -0.8934 12 6 9.8160 -1.1846 0.0323 13 6 10.9707 -0.1900 0.1716 14 6 10.8275 0.5796 1.4866 15 6 10.8226 -0.4059 2.6571 16 6 11.9999 1.5504 1.6406 17 6 9.5094 1.3686 1.4706 18 7 8.4091 0.4345 1.1956 19 6 7.3270 0.3655 2.0318 20 1 6.7963 -0.5675 2.1524 21 6 6.9120 1.4946 2.7247 22 7 7.2228 2.6926 2.2769 23 14 5.9128 1.3136 4.2925 24 1 5.5977 2.6588 4.8367 25 1 4.6499 0.5916 3.9940 26 1 6.6969 0.5464 5.2934 27 6 2.3514 -1.1325 0.0007 28 6 1.9558 -2.5867 0.0005 29 1 -0.3634 0.0005 1.0276 30 1 -0.3632 0.8897 -0.5144 31 1 -0.3632 -0.8903 -0.5134 32 1 6.0599 0.2969 0.0012 33 1 7.3784 -2.0367 -0.8881 34 1 7.3782 -2.0369 0.8919 35 1 9.8222 -1.8701 0.8798 36 1 9.9314 -1.7487 -0.8933 37 1 11.9176 -0.7298 0.1680 38 1 10.9492 0.5106 -0.6633 39 1 11.7577 -0.9661 2.6642 40 1 10.7201 0.1426 3.5934 41 1 9.9862 -1.0962 2.5473 42 1 12.0017 2.2530 0.8071 43 1 11.8978 2.0979 2.5775 44 1 12.9359 0.9918 1.6468 45 1 9.5456 2.1301 0.6917 46 1 9.3533 1.8417 2.4401 47 1 7.6728 2.7895 1.4231 48 1 1.8602 -2.9373 1.0282 49 1 1.0017 -2.7037 -0.5135 50 1 2.7193 -3.1709 -0.5131 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001089656307.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:00:03 Heat of formation + Delta-G solvation = 15.476719 kcal Electronic energy + Delta-G solvation = -31087.035464 eV Core-core repulsion = 27117.085946 eV Total energy + Delta-G solvation = -3969.949519 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -46.02487 -40.99506 -40.03990 -36.94592 -36.34036 -35.27261 -34.01647 -33.44591 -31.54654 -30.02118 -29.42342 -28.62802 -28.09134 -27.26619 -25.55341 -24.02928 -23.47662 -22.79263 -21.86794 -21.05855 -19.54633 -19.33876 -18.86489 -18.54271 -17.20965 -17.06333 -16.85574 -16.02822 -15.70164 -15.60318 -15.47959 -15.18616 -14.83429 -14.72692 -14.60176 -14.47992 -14.05413 -14.01812 -13.84853 -13.76470 -13.66921 -13.46615 -13.17502 -13.12390 -12.80353 -12.70916 -12.55762 -12.34382 -12.24616 -12.13504 -12.03811 -11.78926 -11.65239 -11.37206 -11.31809 -11.05098 -11.00211 -10.81882 -10.57351 -10.41954 -9.95588 -8.76608 -8.06307 -5.28999 -0.28468 0.99030 1.50684 1.53312 1.61859 1.71490 1.93831 2.28340 2.61523 3.07290 3.28263 3.42675 3.51232 3.73065 3.90018 3.90801 3.94680 4.10458 4.20799 4.23748 4.35181 4.43747 4.58212 4.60319 4.63075 4.66130 4.73359 4.77092 4.78209 4.83794 4.88389 4.89958 4.98912 5.02263 5.06513 5.07688 5.09323 5.16863 5.26309 5.28368 5.30875 5.38232 5.44905 5.52264 5.59899 5.75475 6.02560 6.36434 6.53618 6.92671 7.05795 7.14491 7.86344 8.33529 9.14149 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.014647 B = 0.004080 C = 0.003543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1911.231154 B = 6860.859866 C = 7900.327563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.014 3.986 3 N -0.374 5.374 4 O 0.091 5.909 5 C -0.104 4.104 6 C 0.596 3.404 7 O -0.548 6.548 8 N -0.677 5.677 9 C 0.140 3.860 10 C 0.159 3.841 11 H 0.029 0.971 12 C -0.122 4.122 13 C -0.092 4.092 14 C -0.086 4.086 15 C -0.118 4.118 16 C -0.131 4.131 17 C 0.175 3.825 18 N -0.603 5.603 19 C -0.318 4.318 20 H 0.050 0.950 21 C -0.058 4.058 22 N -0.941 5.941 23 Si 1.081 2.919 24 H -0.296 1.296 25 H -0.294 1.294 26 H -0.283 1.283 27 C -0.125 4.125 28 C -0.078 4.078 29 H 0.095 0.905 30 H 0.084 0.916 31 H 0.113 0.887 32 H 0.412 0.588 33 H 0.084 0.916 34 H 0.055 0.945 35 H 0.062 0.938 36 H 0.083 0.917 37 H 0.077 0.923 38 H 0.054 0.946 39 H 0.062 0.938 40 H 0.028 0.972 41 H 0.047 0.953 42 H 0.051 0.949 43 H 0.041 0.959 44 H 0.071 0.929 45 H -0.001 1.001 46 H 0.038 0.962 47 H 0.259 0.741 48 H 0.085 0.915 49 H 0.107 0.893 50 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.042 -9.232 -6.672 11.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.145 4.145 3 N -0.080 5.080 4 O 0.024 5.976 5 C -0.169 4.169 6 C 0.380 3.620 7 O -0.429 6.429 8 N -0.325 5.325 9 C 0.017 3.983 10 C 0.053 3.947 11 H 0.047 0.953 12 C -0.162 4.162 13 C -0.129 4.129 14 C -0.087 4.087 15 C -0.175 4.175 16 C -0.189 4.189 17 C 0.049 3.951 18 N -0.328 5.328 19 C -0.448 4.448 20 H 0.068 0.932 21 C -0.257 4.257 22 N -0.583 5.583 23 Si 0.911 3.089 24 H -0.223 1.223 25 H -0.221 1.221 26 H -0.210 1.210 27 C -0.130 4.130 28 C -0.134 4.134 29 H 0.114 0.886 30 H 0.103 0.897 31 H 0.131 0.869 32 H 0.249 0.751 33 H 0.102 0.898 34 H 0.073 0.927 35 H 0.081 0.919 36 H 0.101 0.899 37 H 0.095 0.905 38 H 0.073 0.927 39 H 0.081 0.919 40 H 0.047 0.953 41 H 0.066 0.934 42 H 0.070 0.930 43 H 0.060 0.940 44 H 0.090 0.910 45 H 0.017 0.983 46 H 0.056 0.944 47 H 0.070 0.930 48 H 0.103 0.897 49 H 0.126 0.874 50 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -3.922 -7.953 -5.411 10.388 hybrid contribution 0.656 -0.375 -0.823 1.117 sum -3.265 -8.327 -6.234 10.903 Atomic orbital electron populations 1.20425 0.81934 1.05609 1.04949 1.24289 1.01100 0.87196 1.01902 1.73745 0.89534 1.25849 1.18907 1.85007 1.21749 1.22556 1.68255 1.24224 0.97854 0.83971 1.10875 1.16609 0.81601 0.85992 0.77818 1.90742 1.86541 1.12180 1.53452 1.46020 1.05036 1.11554 1.69876 1.21400 0.81480 0.94094 1.01340 1.20901 0.93374 0.91133 0.89252 0.95323 1.21930 0.93984 0.98008 1.02243 1.21396 0.98199 0.97474 0.95840 1.21122 0.95256 0.96220 0.96125 1.21621 1.00945 0.98546 0.96402 1.21740 0.97512 0.98704 1.00921 1.20894 0.86439 0.90464 0.97256 1.44257 1.18487 1.45237 1.24782 1.19847 1.07755 0.95056 1.22151 0.93194 1.26289 1.01201 0.92350 1.05837 1.70858 1.42321 1.23561 1.21567 0.83259 0.75314 0.74873 0.75466 1.22251 1.22106 1.20951 1.21934 0.89387 1.00078 1.01611 1.20386 1.03495 0.85567 1.03963 0.88622 0.89734 0.86878 0.75120 0.89822 0.92689 0.91899 0.89885 0.90456 0.92722 0.91858 0.95321 0.93369 0.92973 0.94030 0.90987 0.98287 0.94360 0.93047 0.89690 0.87429 0.90545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.26 10.39 71.23 0.74 -0.52 16 2 C 0.01 0.40 7.31 43.55 0.32 0.72 16 3 N -0.37 -13.81 12.04 -48.85 -0.59 -14.40 16 4 O 0.09 3.69 11.04 65.85 0.73 4.42 16 5 C -0.10 -3.87 7.29 24.39 0.18 -3.70 16 6 C 0.60 23.17 7.82 86.69 0.68 23.85 16 7 O -0.55 -21.92 15.11 -3.98 -0.06 -21.98 16 8 N -0.68 -26.48 3.80 -466.29 -1.77 -28.25 16 9 C 0.14 4.98 4.44 86.38 0.38 5.36 16 10 C 0.16 5.70 3.01 44.97 0.14 5.83 16 11 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 12 C -0.12 -3.53 5.04 30.67 0.15 -3.38 16 13 C -0.09 -2.55 4.71 30.62 0.14 -2.41 16 14 C -0.09 -2.83 0.77 -51.96 -0.04 -2.87 16 15 C -0.12 -3.93 7.99 71.98 0.58 -3.36 16 16 C -0.13 -3.74 8.48 71.98 0.61 -3.13 16 17 C 0.18 7.55 3.41 86.51 0.29 7.84 16 18 N -0.60 -26.36 2.23 -674.40 -1.51 -27.86 16 19 C -0.32 -15.87 6.84 84.04 0.57 -15.29 16 20 H 0.05 2.60 5.91 -2.91 -0.02 2.58 16 21 C -0.06 -3.14 4.72 84.86 0.40 -2.74 16 22 N -0.94 -54.65 12.50 21.65 0.27 -54.37 16 23 Si 1.08 52.27 29.98 68.60 2.06 54.33 16 24 H -0.30 -14.78 7.11 99.48 0.71 -14.07 16 25 H -0.29 -14.00 7.11 99.48 0.71 -13.30 16 26 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 27 C -0.13 -3.81 6.36 -19.45 -0.12 -3.94 16 28 C -0.08 -1.75 9.86 71.24 0.70 -1.05 16 29 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.11 1.26 7.65 -2.39 -0.02 1.24 16 32 H 0.41 17.71 7.16 -92.71 -0.66 17.04 16 33 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 34 H 0.05 2.14 7.46 -2.38 -0.02 2.13 16 35 H 0.06 1.91 6.34 -2.39 -0.02 1.89 16 36 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 37 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 38 H 0.05 1.53 8.14 -2.38 -0.02 1.51 16 39 H 0.06 1.72 8.14 -2.38 -0.02 1.70 16 40 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.05 1.78 5.97 -2.39 -0.01 1.77 16 42 H 0.05 1.44 8.14 -2.38 -0.02 1.42 16 43 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 44 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 45 H 0.00 -0.04 7.82 -2.39 -0.02 -0.06 16 46 H 0.04 1.95 6.46 -2.39 -0.02 1.93 16 47 H 0.26 15.14 6.64 -92.71 -0.62 14.53 16 48 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 49 H 0.11 1.58 7.65 -2.38 -0.02 1.56 16 50 H 0.08 1.97 6.73 -2.39 -0.02 1.95 16 Total: -1.00 -64.86 388.11 5.29 -59.57 By element: Atomic # 1 Polarization: 26.88 SS G_CDS: 0.44 Total: 27.31 kcal Atomic # 6 Polarization: -4.48 SS G_CDS: 5.73 Total: 1.24 kcal Atomic # 7 Polarization: -121.29 SS G_CDS: -3.60 Total: -124.89 kcal Atomic # 8 Polarization: -18.23 SS G_CDS: 0.67 Total: -17.56 kcal Atomic # 14 Polarization: 52.27 SS G_CDS: 2.06 Total: 54.33 kcal Total: -64.86 5.29 -59.57 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089656307.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.044 kcal (2) G-P(sol) polarization free energy of solvation -64.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.567 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds