Wall clock time and date at job start Tue Mar 31 2020 19:28:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.29938 * 125.37868 * 2 1 4 4 C 1.36061 * 108.47660 * 179.97438 * 3 2 1 5 5 C 1.47426 * 126.44613 * 179.97438 * 4 3 2 6 6 O 1.21614 * 119.99961 * 180.02562 * 5 4 3 7 7 N 1.34775 * 119.99908 * 0.02925 * 5 4 3 8 8 C 1.46501 * 119.99959 * 180.02562 * 7 5 4 9 9 C 1.52994 * 109.47178 * 179.97438 * 8 7 5 10 10 H 1.09004 * 109.58725 * 299.91806 * 9 8 7 11 11 C 1.53197 * 109.70541 * 179.55744 * 9 8 7 12 12 C 1.53042 * 109.31227 * 185.50497 * 11 9 8 13 13 C 1.53048 * 109.53478 * 61.36936 * 12 11 9 14 14 C 1.53002 * 109.49401 * 178.67920 * 13 12 11 15 15 C 1.52999 * 109.49886 * 58.58535 * 13 12 11 16 16 C 1.53188 * 109.31141 * 298.63107 * 13 12 11 17 17 N 1.46921 * 108.77623 * 54.63534 * 16 13 12 18 18 C 1.36936 * 120.62961 * 126.37120 * 17 16 13 19 19 H 1.08006 * 120.00402 * 211.14368 * 18 17 16 20 20 C 1.38811 * 120.00229 * 31.13661 * 18 17 16 21 21 N 1.31625 * 119.99958 * 13.90981 * 20 18 17 22 22 Si 1.86801 * 120.00258 * 193.90575 * 20 18 17 23 23 H 1.48498 * 109.47143 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.47022 * 120.00097 * 22 20 18 25 25 H 1.48505 * 109.47127 * 240.00039 * 22 20 18 26 26 C 1.36084 * 107.10635 * 0.23061 * 4 3 2 27 27 C 1.50701 * 126.52737 * 179.77445 * 26 4 3 28 28 O 1.34051 * 125.38017 * 179.97438 * 2 1 3 29 29 H 1.08999 * 109.47190 * 89.99866 * 1 2 3 30 30 H 1.09007 * 109.47031 * 209.99267 * 1 2 3 31 31 H 1.08996 * 109.47292 * 329.99443 * 1 2 3 32 32 H 0.97001 * 120.00253 * 359.97438 * 7 5 4 33 33 H 1.08994 * 109.47240 * 59.99260 * 8 7 5 34 34 H 1.09005 * 109.46646 * 299.99281 * 8 7 5 35 35 H 1.08994 * 109.49426 * 305.45970 * 11 9 8 36 36 H 1.09001 * 109.49377 * 65.56009 * 11 9 8 37 37 H 1.08993 * 109.46468 * 301.34874 * 12 11 9 38 38 H 1.08998 * 109.45578 * 181.38517 * 12 11 9 39 39 H 1.09003 * 109.46912 * 179.83304 * 14 13 12 40 40 H 1.08997 * 109.47047 * 299.83787 * 14 13 12 41 41 H 1.09000 * 109.47068 * 59.83913 * 14 13 12 42 42 H 1.09002 * 109.46633 * 300.15687 * 15 13 12 43 43 H 1.08998 * 109.47327 * 60.15688 * 15 13 12 44 44 H 1.08999 * 109.46967 * 180.16018 * 15 13 12 45 45 H 1.09006 * 109.58913 * 294.84743 * 16 13 12 46 46 H 1.09006 * 109.70454 * 174.49553 * 16 13 12 47 47 H 0.96995 * 119.99934 * 179.97438 * 21 20 18 48 48 H 1.09000 * 109.47282 * 89.99835 * 27 26 4 49 49 H 1.09004 * 109.47118 * 210.00172 * 27 26 4 50 50 H 1.09001 * 109.46887 * 329.99682 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2593 1.0594 0.0000 4 6 3.5611 0.6639 0.0006 5 6 4.7439 1.5439 0.0003 6 8 5.8605 1.0619 0.0004 7 7 4.5878 2.8826 -0.0001 8 6 5.7631 3.7571 -0.0010 9 6 5.3112 5.2188 -0.0019 10 1 4.7137 5.4160 -0.8920 11 6 6.5365 6.1383 0.0083 12 6 6.0774 7.5918 0.1459 13 6 5.3294 7.7691 1.4693 14 6 4.8996 9.2296 1.6212 15 6 6.2477 7.3830 2.6306 16 6 4.0905 6.8681 1.4757 17 7 4.5087 5.4871 1.1993 18 6 4.1576 4.4692 2.0453 19 1 4.8106 3.6173 2.1656 20 6 2.9625 4.5323 2.7486 21 7 2.0454 5.4137 2.4102 22 14 2.6557 3.3662 4.1753 23 1 3.8337 2.4795 4.3521 24 1 2.4361 4.1504 5.4172 25 1 1.4534 2.5420 3.8913 26 6 3.5660 -0.6970 -0.0043 27 6 4.7802 -1.5896 -0.0104 28 8 2.2831 -1.0930 0.0005 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8901 0.5138 31 1 -0.3633 0.8899 0.5139 32 1 3.6972 3.2671 -0.0005 33 1 6.3609 3.5614 -0.8911 34 1 6.3617 3.5621 0.8889 35 1 7.1792 5.8786 0.8494 36 1 7.0892 6.0181 -0.9234 37 1 5.4149 7.8433 -0.6822 38 1 6.9460 8.2500 0.1287 39 1 4.3643 9.3548 2.5624 40 1 5.7814 9.8702 1.6165 41 1 4.2467 9.5042 0.7927 42 1 6.5545 6.3428 2.5208 43 1 7.1290 8.0243 2.6257 44 1 5.7136 7.5067 3.5727 45 1 3.3935 7.1998 0.7061 46 1 3.6069 6.9152 2.4514 47 1 1.2102 5.4575 2.9013 48 1 5.0754 -1.8085 1.0158 49 1 4.5445 -2.5200 -0.5271 50 1 5.5988 -1.0859 -0.5245 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089716314.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:28:27 Heat of formation + Delta-G solvation = -5.350832 kcal Electronic energy + Delta-G solvation = -31061.779566 eV Core-core repulsion = 27090.926897 eV Total energy + Delta-G solvation = -3970.852669 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -43.18743 -39.20182 -38.29251 -35.08383 -34.63724 -33.15137 -32.83621 -32.05867 -29.99561 -29.93354 -27.73607 -26.57993 -25.86647 -25.42587 -23.77120 -22.55328 -22.15241 -21.00074 -20.05853 -19.67109 -17.86623 -17.54489 -16.84478 -16.26713 -15.52846 -15.40020 -15.29409 -14.27906 -14.09293 -13.99230 -13.95973 -13.69363 -13.59331 -13.40361 -13.25396 -13.08970 -12.81604 -12.68612 -12.62538 -12.35843 -12.19230 -12.12854 -11.64923 -11.38463 -11.24389 -11.11198 -10.94147 -10.82255 -10.74162 -10.57608 -10.41368 -10.35626 -10.07266 -10.02289 -9.76129 -9.57678 -9.37917 -9.21122 -8.62307 -8.47039 -8.12232 -6.57239 -5.77543 -3.22490 1.35004 2.34899 2.66038 3.36068 3.44636 3.48030 3.70950 3.86894 4.18289 4.49753 4.79950 5.14866 5.20004 5.26053 5.36223 5.36913 5.48265 5.49394 5.49890 5.54065 5.57311 5.65214 5.79380 5.79558 5.91506 6.04267 6.06577 6.12055 6.15604 6.19831 6.26224 6.32896 6.38598 6.43741 6.48821 6.50993 6.51695 6.55676 6.68894 6.94349 6.97800 7.05865 7.16096 7.20119 7.42607 7.71175 7.75352 7.86568 8.34233 8.47335 8.85419 9.23447 9.84590 10.42296 11.29643 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.013365 B = 0.004289 C = 0.003696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2094.481110 B = 6527.158047 C = 7573.219624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 C 0.182 3.818 3 N -0.441 5.441 4 C -0.059 4.059 5 C 0.592 3.408 6 O -0.562 6.562 7 N -0.671 5.671 8 C 0.134 3.866 9 C 0.160 3.840 10 H 0.031 0.969 11 C -0.129 4.129 12 C -0.095 4.095 13 C -0.095 4.095 14 C -0.133 4.133 15 C -0.124 4.124 16 C 0.188 3.812 17 N -0.584 5.584 18 C -0.248 4.248 19 H 0.068 0.932 20 C 0.017 3.983 21 N -0.895 5.895 22 Si 0.889 3.111 23 H -0.280 1.280 24 H -0.290 1.290 25 H -0.290 1.290 26 C 0.020 3.980 27 C -0.069 4.069 28 O -0.204 6.204 29 H 0.091 0.909 30 H 0.085 0.915 31 H 0.104 0.896 32 H 0.424 0.576 33 H 0.056 0.944 34 H 0.068 0.932 35 H 0.065 0.935 36 H 0.050 0.950 37 H 0.052 0.948 38 H 0.044 0.956 39 H 0.050 0.950 40 H 0.041 0.959 41 H 0.047 0.953 42 H 0.065 0.935 43 H 0.030 0.970 44 H 0.044 0.956 45 H 0.016 0.984 46 H 0.085 0.915 47 H 0.252 0.748 48 H 0.087 0.913 49 H 0.074 0.926 50 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.424 -5.515 -5.887 8.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.027 4.027 3 N -0.170 5.170 4 C -0.179 4.179 5 C 0.377 3.623 6 O -0.443 6.443 7 N -0.321 5.321 8 C 0.010 3.990 9 C 0.053 3.947 10 H 0.048 0.952 11 C -0.169 4.169 12 C -0.133 4.133 13 C -0.097 4.097 14 C -0.191 4.191 15 C -0.181 4.181 16 C 0.063 3.937 17 N -0.307 5.307 18 C -0.378 4.378 19 H 0.085 0.915 20 C -0.183 4.183 21 N -0.539 5.539 22 Si 0.719 3.281 23 H -0.205 1.205 24 H -0.217 1.217 25 H -0.217 1.217 26 C -0.036 4.036 27 C -0.126 4.126 28 O -0.092 6.092 29 H 0.110 0.890 30 H 0.104 0.896 31 H 0.123 0.877 32 H 0.264 0.736 33 H 0.075 0.925 34 H 0.086 0.914 35 H 0.084 0.916 36 H 0.068 0.932 37 H 0.070 0.930 38 H 0.063 0.937 39 H 0.069 0.931 40 H 0.060 0.940 41 H 0.066 0.934 42 H 0.084 0.916 43 H 0.049 0.951 44 H 0.063 0.937 45 H 0.034 0.966 46 H 0.103 0.897 47 H 0.062 0.938 48 H 0.106 0.894 49 H 0.093 0.907 50 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 1.785 -5.184 -5.810 7.989 hybrid contribution -0.602 -0.963 0.952 1.481 sum 1.183 -6.147 -4.859 7.924 Atomic orbital electron populations 1.20259 0.81158 1.05250 1.04525 1.26207 0.96452 0.78311 1.01699 1.70887 1.00768 1.29452 1.15932 1.21650 0.92427 0.92142 1.11687 1.16691 0.85795 0.82416 0.77421 1.90699 1.24264 1.75682 1.53656 1.45866 1.12119 1.04239 1.69871 1.21344 0.87444 0.89436 1.00775 1.20730 0.91995 0.90743 0.91277 0.95159 1.22000 0.98401 0.95908 1.00577 1.21404 0.98659 0.95747 0.97473 1.21245 0.98844 0.95193 0.94376 1.21757 0.99979 0.96154 1.01223 1.21698 0.97465 1.01481 0.97474 1.20790 0.90011 0.81611 1.01312 1.44021 1.60929 1.03584 1.22193 1.19133 1.00203 1.00366 1.18062 0.91474 1.24970 0.95177 0.98051 1.00096 1.70003 1.06321 1.37310 1.40268 0.86425 0.77870 0.80821 0.82982 1.20497 1.21719 1.21739 1.23625 0.83728 0.94655 1.01562 1.20506 0.90444 0.97283 1.04356 1.84265 1.16421 1.38142 1.70323 0.89023 0.89591 0.87749 0.73601 0.92538 0.91391 0.91607 0.93157 0.92957 0.93682 0.93069 0.94006 0.93354 0.91576 0.95101 0.93673 0.96552 0.89650 0.93811 0.89447 0.90715 0.87014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.58 10.51 36.01 0.38 -0.20 16 2 C 0.18 2.89 8.30 -13.08 -0.11 2.78 16 3 N -0.44 -8.57 11.06 -7.65 -0.08 -8.65 16 4 C -0.06 -1.14 6.99 -83.02 -0.58 -1.72 16 5 C 0.59 12.24 7.81 -12.52 -0.10 12.14 16 6 O -0.56 -11.89 14.81 5.27 0.08 -11.81 16 7 N -0.67 -13.99 3.84 -61.38 -0.24 -14.22 16 8 C 0.13 2.59 4.44 -4.04 -0.02 2.57 16 9 C 0.16 3.11 3.00 -67.60 -0.20 2.91 16 10 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 11 C -0.13 -2.16 5.04 -26.61 -0.13 -2.29 16 12 C -0.10 -1.56 4.71 -26.68 -0.13 -1.69 16 13 C -0.09 -1.71 0.77 -154.39 -0.12 -1.83 16 14 C -0.13 -2.13 8.48 37.16 0.32 -1.81 16 15 C -0.12 -2.23 7.99 37.16 0.30 -1.93 16 16 C 0.19 4.19 3.95 -3.72 -0.01 4.18 16 17 N -0.58 -13.24 2.41 -164.77 -0.40 -13.63 16 18 C -0.25 -6.27 6.97 -15.06 -0.10 -6.37 16 19 H 0.07 1.78 5.87 -52.48 -0.31 1.47 16 20 C 0.02 0.44 4.97 -17.43 -0.09 0.36 16 21 N -0.90 -24.61 11.23 55.49 0.62 -23.98 16 22 Si 0.89 21.99 29.58 -169.99 -5.03 16.97 16 23 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 24 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 25 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 26 C 0.02 0.34 7.44 -35.08 -0.26 0.07 16 27 C -0.07 -0.88 9.88 36.01 0.36 -0.53 16 28 O -0.20 -3.17 10.73 6.50 0.07 -3.10 16 29 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 32 H 0.42 9.63 7.12 -40.82 -0.29 9.34 16 33 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.07 1.41 7.42 -51.93 -0.39 1.03 16 35 H 0.07 1.13 6.33 -51.93 -0.33 0.80 16 36 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 40 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.07 1.29 5.97 -51.93 -0.31 0.98 16 43 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 45 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 46 H 0.09 2.17 6.19 -51.93 -0.32 1.85 16 47 H 0.25 6.83 8.31 -40.82 -0.34 6.49 16 48 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 49 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 50 H 0.11 1.53 6.48 -51.93 -0.34 1.19 16 LS Contribution 390.18 15.07 5.88 5.88 Total: -1.00 -29.90 390.18 -7.78 -37.68 By element: Atomic # 1 Polarization: 16.42 SS G_CDS: -8.18 Total: 8.24 kcal Atomic # 6 Polarization: 7.14 SS G_CDS: -0.51 Total: 6.64 kcal Atomic # 7 Polarization: -60.40 SS G_CDS: -0.09 Total: -60.49 kcal Atomic # 8 Polarization: -15.06 SS G_CDS: 0.15 Total: -14.91 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.03 Total: 16.97 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -29.90 -7.78 -37.68 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089716314.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.329 kcal (2) G-P(sol) polarization free energy of solvation -29.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds