Wall clock time and date at job start Tue Mar 31 2020 19:28:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.29938 * 125.37868 * 2 1 4 4 C 1.36061 * 108.47660 * 179.97438 * 3 2 1 5 5 C 1.47426 * 126.44613 * 179.97438 * 4 3 2 6 6 O 1.21614 * 119.99961 * 180.02562 * 5 4 3 7 7 N 1.34775 * 119.99908 * 0.02925 * 5 4 3 8 8 C 1.46501 * 119.99959 * 180.02562 * 7 5 4 9 9 C 1.52994 * 109.47178 * 179.97438 * 8 7 5 10 10 H 1.09004 * 109.58725 * 299.91806 * 9 8 7 11 11 C 1.53197 * 109.70541 * 179.55744 * 9 8 7 12 12 C 1.53042 * 109.31227 * 185.50497 * 11 9 8 13 13 C 1.53048 * 109.53478 * 61.36936 * 12 11 9 14 14 C 1.53002 * 109.49401 * 178.67920 * 13 12 11 15 15 C 1.52999 * 109.49886 * 58.58535 * 13 12 11 16 16 C 1.53188 * 109.31141 * 298.63107 * 13 12 11 17 17 N 1.46921 * 108.77623 * 54.63534 * 16 13 12 18 18 C 1.36936 * 120.62961 * 126.37120 * 17 16 13 19 19 H 1.08006 * 120.00402 * 211.14368 * 18 17 16 20 20 C 1.38811 * 120.00229 * 31.13661 * 18 17 16 21 21 N 1.31625 * 119.99958 * 13.90981 * 20 18 17 22 22 Si 1.86801 * 120.00258 * 193.90575 * 20 18 17 23 23 H 1.48498 * 109.47143 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.47022 * 120.00097 * 22 20 18 25 25 H 1.48505 * 109.47127 * 240.00039 * 22 20 18 26 26 C 1.36084 * 107.10635 * 0.23061 * 4 3 2 27 27 C 1.50701 * 126.52737 * 179.77445 * 26 4 3 28 28 O 1.34051 * 125.38017 * 179.97438 * 2 1 3 29 29 H 1.08999 * 109.47190 * 89.99866 * 1 2 3 30 30 H 1.09007 * 109.47031 * 209.99267 * 1 2 3 31 31 H 1.08996 * 109.47292 * 329.99443 * 1 2 3 32 32 H 0.97001 * 120.00253 * 359.97438 * 7 5 4 33 33 H 1.08994 * 109.47240 * 59.99260 * 8 7 5 34 34 H 1.09005 * 109.46646 * 299.99281 * 8 7 5 35 35 H 1.08994 * 109.49426 * 305.45970 * 11 9 8 36 36 H 1.09001 * 109.49377 * 65.56009 * 11 9 8 37 37 H 1.08993 * 109.46468 * 301.34874 * 12 11 9 38 38 H 1.08998 * 109.45578 * 181.38517 * 12 11 9 39 39 H 1.09003 * 109.46912 * 179.83304 * 14 13 12 40 40 H 1.08997 * 109.47047 * 299.83787 * 14 13 12 41 41 H 1.09000 * 109.47068 * 59.83913 * 14 13 12 42 42 H 1.09002 * 109.46633 * 300.15687 * 15 13 12 43 43 H 1.08998 * 109.47327 * 60.15688 * 15 13 12 44 44 H 1.08999 * 109.46967 * 180.16018 * 15 13 12 45 45 H 1.09006 * 109.58913 * 294.84743 * 16 13 12 46 46 H 1.09006 * 109.70454 * 174.49553 * 16 13 12 47 47 H 0.96995 * 119.99934 * 179.97438 * 21 20 18 48 48 H 1.09000 * 109.47282 * 89.99835 * 27 26 4 49 49 H 1.09004 * 109.47118 * 210.00172 * 27 26 4 50 50 H 1.09001 * 109.46887 * 329.99682 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2593 1.0594 0.0000 4 6 3.5611 0.6639 0.0006 5 6 4.7439 1.5439 0.0003 6 8 5.8605 1.0619 0.0004 7 7 4.5878 2.8826 -0.0001 8 6 5.7631 3.7571 -0.0010 9 6 5.3112 5.2188 -0.0019 10 1 4.7137 5.4160 -0.8920 11 6 6.5365 6.1383 0.0083 12 6 6.0774 7.5918 0.1459 13 6 5.3294 7.7691 1.4693 14 6 4.8996 9.2296 1.6212 15 6 6.2477 7.3830 2.6306 16 6 4.0905 6.8681 1.4757 17 7 4.5087 5.4871 1.1993 18 6 4.1576 4.4692 2.0453 19 1 4.8106 3.6173 2.1656 20 6 2.9625 4.5323 2.7486 21 7 2.0454 5.4137 2.4102 22 14 2.6557 3.3662 4.1753 23 1 3.8337 2.4795 4.3521 24 1 2.4361 4.1504 5.4172 25 1 1.4534 2.5420 3.8913 26 6 3.5660 -0.6970 -0.0043 27 6 4.7802 -1.5896 -0.0104 28 8 2.2831 -1.0930 0.0005 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8901 0.5138 31 1 -0.3633 0.8899 0.5139 32 1 3.6972 3.2671 -0.0005 33 1 6.3609 3.5614 -0.8911 34 1 6.3617 3.5621 0.8889 35 1 7.1792 5.8786 0.8494 36 1 7.0892 6.0181 -0.9234 37 1 5.4149 7.8433 -0.6822 38 1 6.9460 8.2500 0.1287 39 1 4.3643 9.3548 2.5624 40 1 5.7814 9.8702 1.6165 41 1 4.2467 9.5042 0.7927 42 1 6.5545 6.3428 2.5208 43 1 7.1290 8.0243 2.6257 44 1 5.7136 7.5067 3.5727 45 1 3.3935 7.1998 0.7061 46 1 3.6069 6.9152 2.4514 47 1 1.2102 5.4575 2.9013 48 1 5.0754 -1.8085 1.0158 49 1 4.5445 -2.5200 -0.5271 50 1 5.5988 -1.0859 -0.5245 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001089716314.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:28:26 Heat of formation + Delta-G solvation = -24.807517 kcal Electronic energy + Delta-G solvation = -31062.623271 eV Core-core repulsion = 27090.926897 eV Total energy + Delta-G solvation = -3971.696374 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -44.46926 -40.80368 -39.85930 -36.66726 -35.96410 -34.99293 -34.02727 -33.62978 -31.73599 -30.99063 -29.20629 -28.00290 -27.31981 -27.15656 -25.19779 -24.10705 -23.63709 -22.30742 -21.71327 -21.14706 -19.46550 -19.05644 -18.12451 -17.99535 -17.25408 -16.88672 -16.72666 -16.11966 -15.72460 -15.39534 -15.31993 -15.17714 -15.06723 -14.73584 -14.62452 -14.34191 -14.32326 -13.93916 -13.77074 -13.58490 -13.51513 -13.20967 -13.15309 -13.02075 -12.87444 -12.75413 -12.53052 -12.49861 -12.29095 -12.23115 -12.11986 -11.87714 -11.77145 -11.62436 -11.25647 -11.13693 -10.91793 -10.84987 -10.48608 -10.01347 -9.66632 -8.49516 -7.80917 -5.25150 0.03476 0.99525 1.33174 1.38140 1.43811 1.45819 2.20514 2.36192 2.48599 2.96998 3.35035 3.59665 3.60033 3.81245 3.99517 4.05177 4.14835 4.21435 4.32531 4.34957 4.43306 4.52180 4.55650 4.59967 4.61256 4.66019 4.72467 4.79681 4.87879 4.90331 4.93576 4.96838 5.06516 5.10269 5.11645 5.14973 5.16909 5.21460 5.27109 5.41031 5.48418 5.54360 5.59183 5.64882 5.73124 5.83632 5.90713 6.41065 6.47667 6.71779 7.20452 7.24091 7.92416 8.44995 9.23548 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.013365 B = 0.004289 C = 0.003696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2094.481110 B = 6527.158047 C = 7573.219624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 C 0.189 3.811 3 N -0.488 5.488 4 C -0.103 4.103 5 C 0.588 3.412 6 O -0.573 6.573 7 N -0.679 5.679 8 C 0.138 3.862 9 C 0.159 3.841 10 H 0.025 0.975 11 C -0.122 4.122 12 C -0.091 4.091 13 C -0.091 4.091 14 C -0.128 4.128 15 C -0.117 4.117 16 C 0.198 3.802 17 N -0.594 5.594 18 C -0.224 4.224 19 H 0.055 0.945 20 C -0.025 4.025 21 N -0.919 5.919 22 Si 0.928 3.072 23 H -0.286 1.286 24 H -0.291 1.291 25 H -0.296 1.296 26 C 0.035 3.965 27 C -0.067 4.067 28 O -0.196 6.196 29 H 0.119 0.881 30 H 0.116 0.884 31 H 0.096 0.904 32 H 0.414 0.586 33 H 0.078 0.922 34 H 0.051 0.949 35 H 0.063 0.937 36 H 0.081 0.919 37 H 0.052 0.948 38 H 0.076 0.924 39 H 0.040 0.960 40 H 0.069 0.931 41 H 0.049 0.951 42 H 0.046 0.954 43 H 0.061 0.939 44 H 0.028 0.972 45 H -0.009 1.009 46 H 0.048 0.952 47 H 0.245 0.755 48 H 0.098 0.902 49 H 0.110 0.890 50 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.595 -5.965 -6.907 9.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.020 4.020 3 N -0.218 5.218 4 C -0.222 4.222 5 C 0.375 3.625 6 O -0.455 6.455 7 N -0.327 5.327 8 C 0.015 3.985 9 C 0.053 3.947 10 H 0.043 0.957 11 C -0.161 4.161 12 C -0.128 4.128 13 C -0.093 4.093 14 C -0.186 4.186 15 C -0.174 4.174 16 C 0.072 3.928 17 N -0.318 5.318 18 C -0.355 4.355 19 H 0.073 0.927 20 C -0.222 4.222 21 N -0.566 5.566 22 Si 0.759 3.241 23 H -0.212 1.212 24 H -0.218 1.218 25 H -0.223 1.223 26 C -0.022 4.022 27 C -0.123 4.123 28 O -0.084 6.084 29 H 0.137 0.863 30 H 0.134 0.866 31 H 0.114 0.886 32 H 0.251 0.749 33 H 0.096 0.904 34 H 0.070 0.930 35 H 0.081 0.919 36 H 0.099 0.901 37 H 0.071 0.929 38 H 0.094 0.906 39 H 0.060 0.940 40 H 0.088 0.912 41 H 0.068 0.932 42 H 0.065 0.935 43 H 0.080 0.920 44 H 0.047 0.953 45 H 0.009 0.991 46 H 0.066 0.934 47 H 0.055 0.945 48 H 0.116 0.884 49 H 0.129 0.871 50 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 2.993 -5.628 -6.838 9.348 hybrid contribution -0.974 -0.899 1.217 1.799 sum 2.019 -6.527 -5.621 8.847 Atomic orbital electron populations 1.20566 0.77692 1.06262 1.06590 1.27205 0.98006 0.77599 0.99214 1.70840 1.01312 1.31412 1.18233 1.21630 0.92264 0.93297 1.14976 1.16940 0.86332 0.82432 0.76838 1.90668 1.24771 1.75803 1.54293 1.45924 1.11782 1.04704 1.70321 1.21368 0.87062 0.89178 1.00902 1.20891 0.92718 0.91699 0.89434 0.95744 1.21935 0.96799 0.95288 1.02099 1.21389 0.99501 0.95964 0.95988 1.21143 0.96870 0.95442 0.95833 1.21706 1.01127 0.94926 1.00842 1.21617 0.98304 1.00940 0.96548 1.20568 0.91600 0.82360 0.98238 1.44165 1.61106 1.03331 1.23155 1.19062 0.99100 1.00040 1.17302 0.92748 1.25337 0.95608 0.99338 1.01907 1.70099 1.06512 1.38746 1.41224 0.85803 0.77020 0.79571 0.81660 1.21180 1.21799 1.22348 1.24218 0.84884 0.94186 0.98938 1.20653 0.88432 0.97927 1.05327 1.84308 1.16058 1.37863 1.70145 0.86304 0.86586 0.88582 0.74889 0.90392 0.93045 0.91860 0.90086 0.92930 0.90582 0.94046 0.91157 0.93156 0.93492 0.92021 0.95308 0.99104 0.93363 0.94496 0.88373 0.87130 0.88065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.06 10.51 71.24 0.75 -0.31 16 2 C 0.19 5.86 8.30 88.39 0.73 6.59 16 3 N -0.49 -19.34 11.06 -293.04 -3.24 -22.58 16 4 C -0.10 -4.05 6.99 40.41 0.28 -3.77 16 5 C 0.59 24.90 7.81 86.66 0.68 25.57 16 6 O -0.57 -24.49 14.81 -4.08 -0.06 -24.55 16 7 N -0.68 -29.12 3.84 -466.37 -1.79 -30.92 16 8 C 0.14 5.37 4.44 86.38 0.38 5.75 16 9 C 0.16 6.15 3.00 44.97 0.14 6.28 16 10 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 11 C -0.12 -3.79 5.04 30.67 0.15 -3.63 16 12 C -0.09 -2.71 4.71 30.62 0.14 -2.57 16 13 C -0.09 -3.18 0.77 -52.10 -0.04 -3.22 16 14 C -0.13 -3.86 8.48 71.98 0.61 -3.25 16 15 C -0.12 -4.05 7.99 71.98 0.58 -3.47 16 16 C 0.20 9.03 3.95 86.36 0.34 9.37 16 17 N -0.59 -27.54 2.41 -675.22 -1.63 -29.16 16 18 C -0.22 -11.71 6.97 84.03 0.59 -11.13 16 19 H 0.05 2.99 5.87 -2.91 -0.02 2.97 16 20 C -0.03 -1.39 4.97 84.86 0.42 -0.97 16 21 N -0.92 -52.72 11.23 21.65 0.24 -52.48 16 22 Si 0.93 46.70 29.58 68.60 2.03 48.73 16 23 H -0.29 -14.52 7.11 99.48 0.71 -13.81 16 24 H -0.29 -14.52 7.11 99.48 0.71 -13.81 16 25 H -0.30 -15.03 7.11 99.48 0.71 -14.32 16 26 C 0.03 1.11 7.44 25.18 0.19 1.30 16 27 C -0.07 -1.60 9.88 71.24 0.70 -0.89 16 28 O -0.20 -5.81 10.73 0.35 0.00 -5.80 16 29 H 0.12 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.12 1.57 8.14 -2.38 -0.02 1.55 16 31 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 32 H 0.41 19.60 7.12 -92.71 -0.66 18.94 16 33 H 0.08 2.67 8.14 -2.39 -0.02 2.65 16 34 H 0.05 2.16 7.42 -2.38 -0.02 2.14 16 35 H 0.06 2.03 6.33 -2.39 -0.02 2.02 16 36 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 37 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 39 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 40 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 41 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 42 H 0.05 1.79 5.97 -2.39 -0.01 1.78 16 43 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 44 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 45 H -0.01 -0.45 8.14 -2.38 -0.02 -0.47 16 46 H 0.05 2.56 6.19 -2.38 -0.01 2.54 16 47 H 0.25 13.91 8.31 -92.71 -0.77 13.13 16 48 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 49 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 50 H 0.10 2.67 6.48 -2.39 -0.02 2.66 16 Total: -1.00 -68.23 390.18 2.48 -65.74 By element: Atomic # 1 Polarization: 29.07 SS G_CDS: 0.28 Total: 29.35 kcal Atomic # 6 Polarization: 15.01 SS G_CDS: 6.64 Total: 21.66 kcal Atomic # 7 Polarization: -128.72 SS G_CDS: -6.42 Total: -135.13 kcal Atomic # 8 Polarization: -30.29 SS G_CDS: -0.06 Total: -30.35 kcal Atomic # 14 Polarization: 46.70 SS G_CDS: 2.03 Total: 48.73 kcal Total: -68.23 2.48 -65.74 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089716314.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.933 kcal (2) G-P(sol) polarization free energy of solvation -68.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds