Wall clock time and date at job start Tue Mar 31 2020 18:54:32
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50695 * 1
3 3 C 1.41262 * 126.70517 * 2 1
4 4 C 1.36830 * 103.85082 * 180.12511 * 3 2 1
5 5 C 1.47510 * 126.94575 * 179.91137 * 4 3 2
6 6 O 1.21579 * 120.00149 * 352.80172 * 5 4 3
7 7 N 1.34778 * 119.99750 * 172.80264 * 5 4 3
8 8 C 1.46927 * 120.63357 * 353.06447 * 7 5 4
9 9 C 1.53185 * 108.77655 * 233.58585 * 8 7 5
10 10 C 1.53045 * 109.31366 * 305.36795 * 9 8 7
11 11 C 1.53002 * 109.45853 * 181.38698 * 10 9 8
12 12 C 1.52995 * 109.47278 * 59.96702 * 11 10 9
13 13 C 1.53004 * 109.46854 * 299.97153 * 11 10 9
14 14 C 1.52993 * 109.46955 * 179.97438 * 11 10 9
15 15 N 1.46505 * 109.47300 * 179.97438 * 14 11 10
16 16 C 1.36933 * 119.99789 * 180.02562 * 15 14 11
17 17 H 1.08001 * 120.00796 * 359.97438 * 16 15 14
18 18 C 1.38819 * 119.99603 * 180.02562 * 16 15 14
19 19 N 1.31619 * 119.99776 * 180.02562 * 18 16 15
20 20 Si 1.86801 * 120.00096 * 359.97438 * 18 16 15
21 21 H 1.48506 * 109.46783 * 89.99931 * 20 18 16
22 22 H 1.48495 * 109.47437 * 210.00239 * 20 18 16
23 23 H 1.48496 * 109.46997 * 330.00711 * 20 18 16
24 24 C 1.53040 * 109.52647 * 61.37097 * 10 9 8
25 25 C 1.46926 * 120.62859 * 173.04051 * 7 5 4
26 26 O 1.34648 * 106.10744 * 359.64812 * 4 3 2
27 27 N 1.20891 * 111.46856 * 0.23987 * 26 4 3
28 28 H 1.08993 * 109.47344 * 270.24797 * 1 2 3
29 29 H 1.08997 * 109.46926 * 30.25548 * 1 2 3
30 30 H 1.09007 * 109.46957 * 150.25222 * 1 2 3
31 31 H 1.07998 * 128.07853 * 0.02562 * 3 2 1
32 32 H 1.08996 * 109.58675 * 113.79722 * 8 7 5
33 33 H 1.09000 * 109.69959 * 353.44677 * 8 7 5
34 34 H 1.08998 * 109.49750 * 185.41175 * 9 8 7
35 35 H 1.09010 * 109.49481 * 65.31747 * 9 8 7
36 36 H 1.08999 * 109.45460 * 301.35660 * 10 9 8
37 37 H 1.08997 * 109.47359 * 179.97438 * 12 11 10
38 38 H 1.09002 * 109.47225 * 299.99916 * 12 11 10
39 39 H 1.09001 * 109.46923 * 60.00269 * 12 11 10
40 40 H 1.09004 * 109.46624 * 299.99548 * 13 11 10
41 41 H 1.08989 * 109.47356 * 60.00107 * 13 11 10
42 42 H 1.09004 * 109.46692 * 180.02562 * 13 11 10
43 43 H 1.09005 * 109.47312 * 59.99442 * 14 11 10
44 44 H 1.09001 * 109.47194 * 299.99699 * 14 11 10
45 45 H 0.96998 * 119.99565 * 359.97438 * 15 14 11
46 46 H 0.97001 * 119.99667 * 180.02562 * 19 18 16
47 47 H 1.08998 * 109.49854 * 58.58322 * 24 10 9
48 48 H 1.09005 * 109.49416 * 178.67828 * 24 10 9
49 49 H 1.08999 * 109.58765 * 246.20219 * 25 7 5
50 50 H 1.09002 * 109.58630 * 6.48881 * 25 7 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.3513 1.1325 0.0000
4 6 3.6121 0.6011 -0.0029
5 6 4.8870 1.3431 -0.0060
6 8 4.8867 2.5517 -0.1381
7 7 6.0523 0.6812 0.1376
8 6 6.0642 -0.7546 0.4490
9 6 6.9292 -0.9822 1.6927
10 6 8.3160 -0.3774 1.4623
11 6 9.1938 -0.6331 2.6892
12 6 9.3252 -2.1403 2.9170
13 6 8.5532 0.0145 3.9185
14 6 10.5805 -0.0292 2.4589
15 7 11.4208 -0.2735 3.6338
16 6 12.7129 0.1793 3.6575
17 1 13.1127 0.7161 2.8099
18 6 13.5093 -0.0527 4.7706
19 7 14.7511 0.3830 4.7936
20 14 12.8181 -0.9818 6.2364
21 1 13.0678 -2.4355 6.0634
22 1 13.4807 -0.5101 7.4788
23 1 11.3563 -0.7387 6.3319
24 6 8.1851 1.1302 1.2343
25 6 7.3348 1.3817 -0.0149
26 8 3.4540 -0.7360 0.0036
27 7 2.2848 -1.0433 0.0050
28 1 -0.3633 0.0044 1.0276
29 1 -0.3633 0.8877 -0.5178
30 1 -0.3633 -0.8923 -0.5099
31 1 2.0678 2.1746 0.0004
32 1 6.4816 -1.3076 -0.3925
33 1 5.0478 -1.0970 0.6431
34 1 7.0250 -2.0520 1.8784
35 1 6.4619 -0.5035 2.5534
36 1 8.7725 -0.8389 0.5867
37 1 9.9509 -2.3225 3.7907
38 1 8.3372 -2.5705 3.0811
39 1 9.7816 -2.6017 2.0413
40 1 8.4596 1.0883 3.7561
41 1 7.5653 -0.4157 4.0825
42 1 9.1787 -0.1673 4.7924
43 1 10.4867 1.0446 2.2965
44 1 11.0368 -0.4905 1.5831
45 1 11.0616 -0.7553 4.3952
46 1 15.3077 0.2205 5.5712
47 1 7.7060 1.5888 2.0993
48 1 9.1752 1.5642 1.0936
49 1 7.8557 1.0029 -0.8942
50 1 7.1559 2.4509 -0.1284
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001101507951.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 18:54:32
Heat of formation + Delta-G solvation = 19.795462 kcal
Electronic energy + Delta-G solvation = -29870.754497 eV
Core-core repulsion = 25900.992254 eV
Total energy + Delta-G solvation = -3969.762244 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 335.200 amu
Computer time = 1.26 seconds
Orbital eigenvalues (eV)
-46.11317 -41.49487 -40.00749 -37.64130 -36.00371 -35.53501 -33.68774 -33.17781
-32.06000 -31.61913 -29.65421 -28.19737 -27.79564 -26.90081 -24.89843 -24.54514
-23.87264 -23.26599 -21.89666 -20.70285 -20.03993 -19.11504 -18.88565 -18.62121
-17.59732 -17.16745 -16.70956 -16.38966 -16.05981 -15.62932 -15.45058 -15.26638
-15.13821 -14.91877 -14.65004 -14.40388 -14.27463 -14.24847 -14.19307 -13.99135
-13.64142 -13.40757 -13.17885 -13.15690 -12.89374 -12.75266 -12.66291 -12.41056
-12.30931 -12.09698 -12.01670 -11.85246 -11.75380 -11.48456 -11.29630 -11.14700
-11.06230 -10.94757 -10.87420 -10.81458 -9.79243 -9.23046 -8.01613 -5.32707
-0.33295 0.98492 1.35180 1.38664 1.39345 1.45910 1.77289 2.03065
2.47981 3.05076 3.19339 3.29822 3.57553 3.68911 3.73334 3.83150
3.92916 3.99666 4.09004 4.17259 4.28628 4.31517 4.35729 4.36633
4.51714 4.58972 4.69189 4.72961 4.77558 4.81368 4.84259 4.89656
4.92341 4.94001 4.99135 5.01115 5.11162 5.15805 5.19397 5.20787
5.25435 5.29866 5.37708 5.48196 5.60594 5.66908 5.78376 6.08908
6.23334 6.69479 7.03784 7.10794 7.89307 8.07642 9.20307
Molecular weight = 335.20amu
Principal moments of inertia in cm(-1)
A = 0.025898 B = 0.002364 C = 0.002272
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1080.920249 B =11839.412641 C =12321.740401
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.078 4.078
2 C 0.016 3.984
3 C -0.149 4.149
4 C -0.092 4.092
5 C 0.601 3.399
6 O -0.550 6.550
7 N -0.590 5.590
8 C 0.097 3.903
9 C -0.126 4.126
10 C -0.065 4.065
11 C -0.059 4.059
12 C -0.139 4.139
13 C -0.139 4.139
14 C 0.161 3.839
15 N -0.754 5.754
16 C -0.227 4.227
17 H 0.055 0.945
18 C -0.067 4.067
19 N -0.985 5.985
20 Si 0.950 3.050
21 H -0.277 1.277
22 H -0.297 1.297
23 H -0.253 1.253
24 C -0.131 4.131
25 C 0.116 3.884
26 O 0.112 5.888
27 N -0.371 5.371
28 H 0.096 0.904
29 H 0.105 0.895
30 H 0.083 0.917
31 H 0.198 0.802
32 H 0.096 0.904
33 H 0.101 0.899
34 H 0.100 0.900
35 H 0.066 0.934
36 H 0.085 0.915
37 H 0.033 0.967
38 H 0.080 0.920
39 H 0.058 0.942
40 H 0.051 0.949
41 H 0.074 0.926
42 H 0.032 0.968
43 H 0.024 0.976
44 H 0.022 0.978
45 H 0.366 0.634
46 H 0.256 0.744
47 H 0.062 0.938
48 H 0.077 0.923
49 H 0.092 0.908
50 H 0.084 0.916
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -31.673 -3.779 -11.483 33.902
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.135 4.135
2 C -0.142 4.142
3 C -0.171 4.171
4 C -0.157 4.157
5 C 0.388 3.612
6 O -0.429 6.429
7 N -0.322 5.322
8 C -0.025 4.025
9 C -0.164 4.164
10 C -0.084 4.084
11 C -0.059 4.059
12 C -0.196 4.196
13 C -0.196 4.196
14 C 0.035 3.965
15 N -0.401 5.401
16 C -0.359 4.359
17 H 0.073 0.927
18 C -0.258 4.258
19 N -0.636 5.636
20 Si 0.778 3.222
21 H -0.203 1.203
22 H -0.224 1.224
23 H -0.178 1.178
24 C -0.169 4.169
25 C -0.006 4.006
26 O 0.044 5.956
27 N -0.076 5.076
28 H 0.114 0.886
29 H 0.124 0.876
30 H 0.102 0.898
31 H 0.215 0.785
32 H 0.114 0.886
33 H 0.118 0.882
34 H 0.118 0.882
35 H 0.085 0.915
36 H 0.103 0.897
37 H 0.052 0.948
38 H 0.099 0.901
39 H 0.077 0.923
40 H 0.070 0.930
41 H 0.093 0.907
42 H 0.051 0.949
43 H 0.042 0.958
44 H 0.040 0.960
45 H 0.200 0.800
46 H 0.065 0.935
47 H 0.081 0.919
48 H 0.096 0.904
49 H 0.110 0.890
50 H 0.102 0.898
Dipole moment (debyes) X Y Z Total
from point charges -31.702 -4.351 -11.646 34.053
hybrid contribution 0.683 0.614 1.143 1.467
sum -31.019 -3.736 -10.503 32.961
Atomic orbital electron populations
1.20412 0.82789 1.05374 1.04932 1.24205 1.00869 0.87484 1.01671
1.23204 0.89579 1.02707 1.01613 1.24127 0.97218 0.84322 1.10051
1.16805 0.81616 0.85593 0.77236 1.90846 1.86136 1.13532 1.52388
1.48143 1.05263 1.11405 1.67341 1.22327 1.02485 0.78631 0.99021
1.22065 0.94090 1.02940 0.97272 1.21042 0.95053 0.95126 0.97129
1.20648 0.93407 0.95984 0.95907 1.21877 1.02056 0.94322 1.01343
1.21908 1.00334 1.00562 0.96787 1.20935 0.89794 0.97278 0.88507
1.42789 1.10450 1.68727 1.18113 1.19061 0.88289 1.27662 1.00857
0.92669 1.25485 0.96190 1.02839 1.01330 1.69886 1.08680 1.53658
1.31400 0.85477 0.78750 0.78759 0.79232 1.20299 1.22359 1.17798
1.22060 1.00234 0.97009 0.97612 1.21779 0.81799 0.98222 0.98784
1.85086 1.21043 1.21885 1.67616 1.73716 0.90036 1.25467 1.18400
0.88572 0.87642 0.89842 0.78464 0.88626 0.88179 0.88156 0.91496
0.89676 0.94815 0.90084 0.92269 0.92958 0.90747 0.94866 0.95779
0.96043 0.79993 0.93477 0.91907 0.90433 0.88996 0.89784
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -0.51 10.47 71.23 0.75 0.23 16
2 C 0.02 0.22 7.31 43.55 0.32 0.54 16
3 C -0.15 -2.29 10.92 22.68 0.25 -2.04 16
4 C -0.09 -1.70 6.90 24.39 0.17 -1.53 16
5 C 0.60 12.98 7.68 86.69 0.67 13.64 16
6 O -0.55 -15.15 16.35 -3.97 -0.06 -15.22 16
7 N -0.59 -10.73 2.97 -822.71 -2.45 -13.17 16
8 C 0.10 1.35 6.14 86.36 0.53 1.88 16
9 C -0.13 -1.87 4.65 30.67 0.14 -1.73 16
10 C -0.06 -1.23 1.51 -10.76 -0.02 -1.25 16
11 C -0.06 -1.53 0.33 -52.18 -0.02 -1.55 16
12 C -0.14 -3.41 7.95 71.98 0.57 -2.84 16
13 C -0.14 -3.69 7.60 71.98 0.55 -3.14 16
14 C 0.16 5.82 4.80 86.38 0.41 6.23 16
15 N -0.75 -34.86 4.81 -343.44 -1.65 -36.51 16
16 C -0.23 -13.07 10.47 84.04 0.88 -12.18 16
17 H 0.06 3.48 8.06 -2.91 -0.02 3.45 16
18 C -0.07 -4.02 5.50 84.86 0.47 -3.55 16
19 N -0.99 -63.87 13.97 21.65 0.30 -63.57 16
20 Si 0.95 45.94 27.74 68.60 1.90 47.85 16
21 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16
22 H -0.30 -14.55 7.11 99.48 0.71 -13.85 16
23 H -0.25 -11.08 6.52 99.48 0.65 -10.43 16
24 C -0.13 -2.69 4.65 30.67 0.14 -2.55 16
25 C 0.12 2.13 6.44 86.36 0.56 2.68 16
26 O 0.11 2.00 7.93 65.76 0.52 2.53 16
27 N -0.37 -6.81 12.04 -48.85 -0.59 -7.40 16
28 H 0.10 0.44 8.14 -2.39 -0.02 0.42 16
29 H 0.10 0.28 8.14 -2.39 -0.02 0.26 16
30 H 0.08 0.52 8.14 -2.38 -0.02 0.50 16
31 H 0.20 2.29 8.06 -2.91 -0.02 2.27 16
32 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16
33 H 0.10 1.39 4.27 -12.81 -0.05 1.33 16
34 H 0.10 1.22 6.36 -2.39 -0.02 1.20 16
35 H 0.07 1.10 6.51 -2.38 -0.02 1.08 16
36 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16
37 H 0.03 0.99 6.86 -2.39 -0.02 0.98 16
38 H 0.08 1.48 6.40 -2.39 -0.02 1.47 16
39 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16
40 H 0.05 1.42 6.46 -2.38 -0.02 1.41 16
41 H 0.07 1.58 6.46 -2.39 -0.02 1.57 16
42 H 0.03 1.04 6.86 -2.38 -0.02 1.03 16
43 H 0.02 0.91 6.40 -2.38 -0.02 0.89 16
44 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16
45 H 0.37 16.23 3.22 -92.71 -0.30 15.93 16
46 H 0.26 15.86 8.31 -92.71 -0.77 15.08 16
47 H 0.06 1.42 6.51 -2.39 -0.02 1.40 16
48 H 0.08 1.77 6.36 -2.38 -0.02 1.76 16
49 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16
50 H 0.08 1.77 7.00 -2.39 -0.02 1.76 16
Total: -1.00 -74.24 379.09 4.91 -69.33
By element:
Atomic # 1 Polarization: 22.75 SS G_CDS: 0.56 Total: 23.31 kcal
Atomic # 6 Polarization: -13.51 SS G_CDS: 6.37 Total: -7.15 kcal
Atomic # 7 Polarization: -116.27 SS G_CDS: -4.38 Total: -120.65 kcal
Atomic # 8 Polarization: -13.15 SS G_CDS: 0.46 Total: -12.69 kcal
Atomic # 14 Polarization: 45.94 SS G_CDS: 1.90 Total: 47.85 kcal
Total: -74.24 4.91 -69.33 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001101507951.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 89.125 kcal
(2) G-P(sol) polarization free energy of solvation -74.235 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.890 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.906 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.329 kcal
(6) G-S(sol) free energy of system = (1) + (5) 19.795 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.26 seconds