Wall clock time and date at job start Tue Mar 31 2020 19:59:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.41259 * 128.07756 * 2 1 4 4 N 1.30125 * 106.58995 * 180.29645 * 3 2 1 5 5 O 1.20887 * 111.98642 * 359.74827 * 4 3 2 6 6 C 1.34642 * 111.46481 * 359.97438 * 5 4 3 7 7 C 1.47506 * 126.94612 * 180.02562 * 6 5 4 8 8 O 1.21584 * 120.00236 * 173.63796 * 7 6 5 9 9 N 1.34780 * 120.00015 * 353.91082 * 7 6 5 10 10 C 1.46927 * 120.63224 * 184.17760 * 9 7 6 11 11 C 1.53621 * 108.54162 * 126.37250 * 10 9 7 12 12 C 1.53038 * 109.24626 * 54.85511 * 11 10 9 13 13 C 1.53002 * 109.44933 * 178.50222 * 12 11 10 14 14 C 1.52999 * 109.47427 * 60.05662 * 13 12 11 15 15 C 1.52992 * 109.47048 * 180.02562 * 13 12 11 16 16 C 1.53002 * 109.46752 * 300.05976 * 13 12 11 17 17 N 1.46500 * 109.47256 * 180.02562 * 16 13 12 18 18 C 1.36938 * 120.00334 * 179.97438 * 17 16 13 19 19 H 1.08001 * 119.99991 * 359.97438 * 18 17 16 20 20 C 1.38805 * 120.00105 * 179.97438 * 18 17 16 21 21 N 1.31621 * 120.00017 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00104 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47035 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47660 * 120.00252 * 22 20 18 25 25 H 1.48509 * 109.47353 * 240.00613 * 22 20 18 26 26 C 1.53041 * 109.53619 * 298.50945 * 12 11 10 27 27 C 1.46932 * 120.62690 * 4.45467 * 9 7 6 28 28 H 1.08995 * 109.47564 * 270.10784 * 1 2 3 29 29 H 1.08992 * 109.46996 * 30.11291 * 1 2 3 30 30 H 1.09001 * 109.46752 * 150.10842 * 1 2 3 31 31 H 1.08001 * 126.70635 * 0.02886 * 3 2 1 32 32 H 1.09005 * 109.58296 * 246.19981 * 10 9 7 33 33 H 1.08996 * 109.58668 * 6.62421 * 10 9 7 34 34 H 1.09006 * 109.63116 * 294.86207 * 11 10 9 35 35 H 1.09000 * 109.43451 * 174.72605 * 11 10 9 36 36 H 1.08994 * 109.46033 * 58.52961 * 12 11 10 37 37 H 1.08995 * 109.47049 * 60.00543 * 14 13 12 38 38 H 1.09000 * 109.46869 * 180.02562 * 14 13 12 39 39 H 1.08996 * 109.47183 * 300.00038 * 14 13 12 40 40 H 1.09000 * 109.47856 * 59.99341 * 15 13 12 41 41 H 1.09007 * 109.47069 * 179.97438 * 15 13 12 42 42 H 1.09005 * 109.47180 * 299.99275 * 15 13 12 43 43 H 1.09003 * 109.47139 * 299.99770 * 16 13 12 44 44 H 1.08996 * 109.47502 * 60.00181 * 16 13 12 45 45 H 0.97001 * 119.99927 * 359.97438 * 17 16 13 46 46 H 0.97005 * 119.99781 * 179.97438 * 21 20 18 47 47 H 1.09000 * 109.50147 * 301.41524 * 26 12 11 48 48 H 1.09002 * 109.52574 * 181.33479 * 26 12 11 49 49 H 1.08995 * 109.58884 * 353.37554 * 27 9 7 50 50 H 1.09001 * 109.58395 * 113.65507 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3782 1.1120 0.0000 4 7 3.5890 0.6353 -0.0065 5 8 3.5996 -0.5735 -0.0054 6 6 2.3509 -1.0771 0.0027 7 6 1.9696 -2.5020 0.0068 8 8 0.8023 -2.8186 0.1309 9 7 2.9158 -3.4532 -0.1214 10 6 2.5440 -4.8718 -0.2108 11 6 3.1878 -5.4671 -1.4721 12 6 4.6968 -5.2143 -1.4355 13 6 5.3479 -5.8380 -2.6717 14 6 4.7564 -5.2062 -3.9333 15 6 6.8565 -5.5862 -2.6352 16 6 5.0817 -7.3446 -2.6829 17 7 5.7057 -7.9420 -3.8661 18 6 5.6003 -9.2889 -4.0895 19 1 5.0576 -9.9110 -3.3931 20 6 6.1911 -9.8548 -5.2109 21 7 6.8529 -9.0968 -6.0593 22 14 6.0468 -11.6920 -5.5159 23 1 5.2585 -12.3150 -4.4224 24 1 5.3646 -11.9263 -6.8140 25 1 7.4031 -12.2957 -5.5535 26 6 4.9631 -3.7073 -1.4246 27 6 4.3392 -3.0916 -0.1683 28 1 -0.3634 0.0019 1.0276 29 1 -0.3633 0.8889 -0.5155 30 1 -0.3633 -0.8910 -0.5122 31 1 2.0948 2.1541 0.0004 32 1 2.9052 -5.4005 0.6714 33 1 1.4596 -4.9620 -0.2749 34 1 2.7615 -4.9962 -2.3580 35 1 2.9994 -6.5402 -1.5036 36 1 5.1186 -5.6642 -0.5368 37 1 4.9460 -4.1329 -3.9254 38 1 5.2200 -5.6509 -4.8139 39 1 3.6815 -5.3851 -3.9596 40 1 7.2785 -6.0357 -1.7364 41 1 7.3205 -6.0309 -3.5157 42 1 7.0456 -4.5127 -2.6276 43 1 5.5031 -7.7948 -1.7840 44 1 4.0069 -7.5235 -2.7092 45 1 6.1934 -7.3834 -4.4914 46 1 7.2661 -9.4923 -6.8428 47 1 4.5201 -3.2531 -2.3108 48 1 6.0382 -3.5274 -1.4225 49 1 4.4396 -2.0069 -0.2044 50 1 4.8432 -3.4759 0.7185 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001101587615.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:59:49 Heat of formation + Delta-G solvation = 39.990661 kcal Electronic energy + Delta-G solvation = -30066.145336 eV Core-core repulsion = 26097.258822 eV Total energy + Delta-G solvation = -3968.886514 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -45.40444 -40.54335 -38.87694 -36.47534 -35.06607 -33.80887 -32.97075 -31.49526 -31.25375 -29.85153 -28.72405 -26.89975 -26.11070 -25.49106 -23.90636 -23.54513 -22.88628 -22.00632 -21.11099 -20.07465 -18.28428 -18.15316 -17.82857 -17.20970 -16.52466 -16.33418 -15.47457 -14.93389 -14.75276 -14.59420 -14.14539 -14.10919 -13.95030 -13.87289 -13.67391 -13.59891 -13.34349 -13.04292 -12.93429 -12.72689 -12.58344 -12.19300 -11.82955 -11.68391 -11.64380 -11.45981 -11.14725 -10.97393 -10.89496 -10.79106 -10.75602 -10.69501 -10.47393 -10.19344 -10.10992 -9.99786 -9.84360 -9.66279 -9.52215 -8.90650 -8.82810 -6.86026 -5.74242 -3.01325 0.44517 1.70486 2.18918 2.64071 2.81604 3.44337 3.50156 3.52186 3.75990 4.00235 4.30014 4.53521 4.59850 4.70532 4.76840 4.80127 4.86930 4.97127 5.15677 5.24716 5.28975 5.31506 5.40817 5.47067 5.47964 5.50419 5.60555 5.63365 5.70604 5.76675 5.82485 5.86935 5.97882 6.01746 6.06658 6.12593 6.18141 6.32985 6.35773 6.39676 6.41441 6.61162 6.74238 6.78662 6.93361 6.98262 7.00241 7.54738 7.72968 7.78700 8.45734 9.56820 10.16847 10.50997 11.48968 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.025613 B = 0.002356 C = 0.002264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.935083 B =11881.443344 C =12362.543375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.121 4.121 3 C -0.012 4.012 4 N -0.347 5.347 5 O 0.114 5.886 6 C -0.089 4.089 7 C 0.603 3.397 8 O -0.516 6.516 9 N -0.593 5.593 10 C 0.113 3.887 11 C -0.135 4.135 12 C -0.073 4.073 13 C -0.064 4.064 14 C -0.138 4.138 15 C -0.138 4.138 16 C 0.162 3.838 17 N -0.729 5.729 18 C -0.234 4.234 19 H 0.069 0.931 20 C -0.016 4.016 21 N -0.934 5.934 22 Si 0.905 3.095 23 H -0.281 1.281 24 H -0.292 1.292 25 H -0.292 1.292 26 C -0.131 4.131 27 C 0.092 3.908 28 H 0.081 0.919 29 H 0.074 0.926 30 H 0.088 0.912 31 H 0.198 0.802 32 H 0.074 0.926 33 H 0.094 0.906 34 H 0.072 0.928 35 H 0.087 0.913 36 H 0.072 0.928 37 H 0.044 0.956 38 H 0.065 0.935 39 H 0.051 0.949 40 H 0.049 0.951 41 H 0.066 0.934 42 H 0.046 0.954 43 H 0.015 0.985 44 H 0.020 0.980 45 H 0.384 0.616 46 H 0.254 0.746 47 H 0.071 0.929 48 H 0.083 0.917 49 H 0.100 0.900 50 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.227 20.563 14.584 26.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.125 4.125 3 C -0.190 4.190 4 N -0.049 5.049 5 O 0.045 5.955 6 C -0.154 4.154 7 C 0.388 3.612 8 O -0.393 6.393 9 N -0.325 5.325 10 C -0.009 4.009 11 C -0.172 4.172 12 C -0.092 4.092 13 C -0.065 4.065 14 C -0.196 4.196 15 C -0.195 4.195 16 C 0.035 3.965 17 N -0.375 5.375 18 C -0.366 4.366 19 H 0.087 0.913 20 C -0.212 4.212 21 N -0.584 5.584 22 Si 0.736 3.264 23 H -0.206 1.206 24 H -0.220 1.220 25 H -0.220 1.220 26 C -0.169 4.169 27 C -0.031 4.031 28 H 0.099 0.901 29 H 0.093 0.907 30 H 0.107 0.893 31 H 0.215 0.785 32 H 0.092 0.908 33 H 0.112 0.888 34 H 0.091 0.909 35 H 0.106 0.894 36 H 0.090 0.910 37 H 0.063 0.937 38 H 0.084 0.916 39 H 0.070 0.930 40 H 0.068 0.932 41 H 0.085 0.915 42 H 0.065 0.935 43 H 0.033 0.967 44 H 0.038 0.962 45 H 0.219 0.781 46 H 0.063 0.937 47 H 0.090 0.910 48 H 0.101 0.899 49 H 0.118 0.882 50 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -8.684 20.749 14.665 26.851 hybrid contribution -0.436 -0.874 -0.483 1.090 sum -9.120 19.875 14.182 26.064 Atomic orbital electron populations 1.20314 0.86299 1.04098 1.03474 1.21667 0.99058 0.90335 1.01485 1.24988 0.87697 1.02050 1.04281 1.73750 1.23266 0.92096 1.15778 1.85065 1.27880 1.15087 1.67500 1.24054 0.84608 0.96212 1.10555 1.16641 0.85381 0.81511 0.77656 1.90835 1.17496 1.80344 1.50604 1.48070 1.06898 1.07154 1.70390 1.21912 1.01723 0.78340 0.98897 1.22219 0.95683 1.02148 0.97185 1.21119 0.94834 0.94411 0.98825 1.20682 0.95352 0.96411 0.94028 1.21893 1.00666 0.98963 0.98046 1.21852 0.95026 0.99975 1.02634 1.20733 0.95667 0.89280 0.90857 1.42440 1.64095 1.05985 1.24936 1.19275 1.27515 0.84567 1.05232 0.91296 1.24713 1.00977 0.97757 0.97720 1.69666 1.40254 1.34006 1.14440 0.86144 0.77143 0.85494 0.77590 1.20627 1.21959 1.21969 1.22093 1.01493 0.96195 0.97161 1.22345 0.79553 1.01576 0.99603 0.90080 0.90707 0.89313 0.78510 0.90820 0.88787 0.90938 0.89444 0.90973 0.93676 0.91636 0.92981 0.93163 0.91527 0.93505 0.96680 0.96219 0.78059 0.93656 0.91001 0.89864 0.88225 0.90479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.60 9.90 36.01 0.36 -0.25 16 2 C -0.12 -1.08 6.36 -103.98 -0.66 -1.75 16 3 C -0.01 -0.10 12.14 -17.13 -0.21 -0.31 16 4 N -0.35 -3.56 12.04 30.46 0.37 -3.19 16 5 O 0.11 1.17 7.75 15.55 0.12 1.29 16 6 C -0.09 -0.93 6.99 -36.32 -0.25 -1.19 16 7 C 0.60 6.98 7.69 -12.48 -0.10 6.89 16 8 O -0.52 -7.02 14.64 5.29 0.08 -6.94 16 9 N -0.59 -6.17 2.97 -173.74 -0.52 -6.69 16 10 C 0.11 1.15 6.45 -3.49 -0.02 1.13 16 11 C -0.13 -1.53 4.66 -26.39 -0.12 -1.65 16 12 C -0.07 -0.85 1.51 -90.58 -0.14 -0.98 16 13 C -0.06 -0.96 0.33 -154.51 -0.05 -1.01 16 14 C -0.14 -2.13 7.59 37.16 0.28 -1.85 16 15 C -0.14 -2.07 7.95 37.15 0.30 -1.78 16 16 C 0.16 3.12 4.80 -4.04 -0.02 3.10 16 17 N -0.73 -17.97 5.01 -59.91 -0.30 -18.27 16 18 C -0.23 -6.50 9.99 -15.06 -0.15 -6.66 16 19 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 20 C -0.02 -0.46 5.50 -17.43 -0.10 -0.56 16 21 N -0.93 -28.14 13.06 55.49 0.72 -27.41 16 22 Si 0.90 22.45 29.55 -169.99 -5.02 17.42 16 23 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 24 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 25 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 26 C -0.13 -1.31 4.65 -26.61 -0.12 -1.44 16 27 C 0.09 0.83 6.33 -3.71 -0.02 0.81 16 28 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.09 0.78 6.88 -51.93 -0.36 0.42 16 31 H 0.20 0.89 8.06 -52.49 -0.42 0.46 16 32 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.09 1.02 7.03 -51.93 -0.37 0.66 16 34 H 0.07 0.89 6.51 -51.93 -0.34 0.55 16 35 H 0.09 1.06 6.36 -51.93 -0.33 0.73 16 36 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.04 0.60 6.46 -51.93 -0.34 0.27 16 38 H 0.06 1.20 6.86 -51.93 -0.36 0.85 16 39 H 0.05 0.79 6.46 -51.93 -0.34 0.46 16 40 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.07 1.21 6.86 -51.92 -0.36 0.85 16 42 H 0.05 0.59 6.40 -51.93 -0.33 0.26 16 43 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 44 H 0.02 0.39 6.40 -51.93 -0.33 0.06 16 45 H 0.38 9.93 5.36 -40.82 -0.22 9.71 16 46 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 47 H 0.07 0.78 6.51 -51.93 -0.34 0.44 16 48 H 0.08 0.78 6.36 -51.93 -0.33 0.45 16 49 H 0.10 0.89 3.82 -54.75 -0.21 0.68 16 50 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 378.64 15.07 5.71 5.71 Total: -1.00 -31.97 378.64 -7.34 -39.31 By element: Atomic # 1 Polarization: 13.72 SS G_CDS: -7.46 Total: 6.26 kcal Atomic # 6 Polarization: -6.46 SS G_CDS: -1.03 Total: -7.49 kcal Atomic # 7 Polarization: -55.83 SS G_CDS: 0.28 Total: -55.56 kcal Atomic # 8 Polarization: -5.85 SS G_CDS: 0.20 Total: -5.65 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.42 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -31.97 -7.34 -39.31 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101587615.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.303 kcal (2) G-P(sol) polarization free energy of solvation -31.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.312 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds