Wall clock time and date at job start Tue Mar 31 2020 19:59:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.41259 * 128.07756 * 2 1 4 4 N 1.30125 * 106.58995 * 180.29645 * 3 2 1 5 5 O 1.20887 * 111.98642 * 359.74827 * 4 3 2 6 6 C 1.34642 * 111.46481 * 359.97438 * 5 4 3 7 7 C 1.47506 * 126.94612 * 180.02562 * 6 5 4 8 8 O 1.21584 * 120.00236 * 173.63796 * 7 6 5 9 9 N 1.34780 * 120.00015 * 353.91082 * 7 6 5 10 10 C 1.46927 * 120.63224 * 184.17760 * 9 7 6 11 11 C 1.53621 * 108.54162 * 126.37250 * 10 9 7 12 12 C 1.53038 * 109.24626 * 54.85511 * 11 10 9 13 13 C 1.53002 * 109.44933 * 178.50222 * 12 11 10 14 14 C 1.52999 * 109.47427 * 60.05662 * 13 12 11 15 15 C 1.52992 * 109.47048 * 180.02562 * 13 12 11 16 16 C 1.53002 * 109.46752 * 300.05976 * 13 12 11 17 17 N 1.46500 * 109.47256 * 180.02562 * 16 13 12 18 18 C 1.36938 * 120.00334 * 179.97438 * 17 16 13 19 19 H 1.08001 * 119.99991 * 359.97438 * 18 17 16 20 20 C 1.38805 * 120.00105 * 179.97438 * 18 17 16 21 21 N 1.31621 * 120.00017 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00104 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47035 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47660 * 120.00252 * 22 20 18 25 25 H 1.48509 * 109.47353 * 240.00613 * 22 20 18 26 26 C 1.53041 * 109.53619 * 298.50945 * 12 11 10 27 27 C 1.46932 * 120.62690 * 4.45467 * 9 7 6 28 28 H 1.08995 * 109.47564 * 270.10784 * 1 2 3 29 29 H 1.08992 * 109.46996 * 30.11291 * 1 2 3 30 30 H 1.09001 * 109.46752 * 150.10842 * 1 2 3 31 31 H 1.08001 * 126.70635 * 0.02886 * 3 2 1 32 32 H 1.09005 * 109.58296 * 246.19981 * 10 9 7 33 33 H 1.08996 * 109.58668 * 6.62421 * 10 9 7 34 34 H 1.09006 * 109.63116 * 294.86207 * 11 10 9 35 35 H 1.09000 * 109.43451 * 174.72605 * 11 10 9 36 36 H 1.08994 * 109.46033 * 58.52961 * 12 11 10 37 37 H 1.08995 * 109.47049 * 60.00543 * 14 13 12 38 38 H 1.09000 * 109.46869 * 180.02562 * 14 13 12 39 39 H 1.08996 * 109.47183 * 300.00038 * 14 13 12 40 40 H 1.09000 * 109.47856 * 59.99341 * 15 13 12 41 41 H 1.09007 * 109.47069 * 179.97438 * 15 13 12 42 42 H 1.09005 * 109.47180 * 299.99275 * 15 13 12 43 43 H 1.09003 * 109.47139 * 299.99770 * 16 13 12 44 44 H 1.08996 * 109.47502 * 60.00181 * 16 13 12 45 45 H 0.97001 * 119.99927 * 359.97438 * 17 16 13 46 46 H 0.97005 * 119.99781 * 179.97438 * 21 20 18 47 47 H 1.09000 * 109.50147 * 301.41524 * 26 12 11 48 48 H 1.09002 * 109.52574 * 181.33479 * 26 12 11 49 49 H 1.08995 * 109.58884 * 353.37554 * 27 9 7 50 50 H 1.09001 * 109.58395 * 113.65507 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3782 1.1120 0.0000 4 7 3.5890 0.6353 -0.0065 5 8 3.5996 -0.5735 -0.0054 6 6 2.3509 -1.0771 0.0027 7 6 1.9696 -2.5020 0.0068 8 8 0.8023 -2.8186 0.1309 9 7 2.9158 -3.4532 -0.1214 10 6 2.5440 -4.8718 -0.2108 11 6 3.1878 -5.4671 -1.4721 12 6 4.6968 -5.2143 -1.4355 13 6 5.3479 -5.8380 -2.6717 14 6 4.7564 -5.2062 -3.9333 15 6 6.8565 -5.5862 -2.6352 16 6 5.0817 -7.3446 -2.6829 17 7 5.7057 -7.9420 -3.8661 18 6 5.6003 -9.2889 -4.0895 19 1 5.0576 -9.9110 -3.3931 20 6 6.1911 -9.8548 -5.2109 21 7 6.8529 -9.0968 -6.0593 22 14 6.0468 -11.6920 -5.5159 23 1 5.2585 -12.3150 -4.4224 24 1 5.3646 -11.9263 -6.8140 25 1 7.4031 -12.2957 -5.5535 26 6 4.9631 -3.7073 -1.4246 27 6 4.3392 -3.0916 -0.1683 28 1 -0.3634 0.0019 1.0276 29 1 -0.3633 0.8889 -0.5155 30 1 -0.3633 -0.8910 -0.5122 31 1 2.0948 2.1541 0.0004 32 1 2.9052 -5.4005 0.6714 33 1 1.4596 -4.9620 -0.2749 34 1 2.7615 -4.9962 -2.3580 35 1 2.9994 -6.5402 -1.5036 36 1 5.1186 -5.6642 -0.5368 37 1 4.9460 -4.1329 -3.9254 38 1 5.2200 -5.6509 -4.8139 39 1 3.6815 -5.3851 -3.9596 40 1 7.2785 -6.0357 -1.7364 41 1 7.3205 -6.0309 -3.5157 42 1 7.0456 -4.5127 -2.6276 43 1 5.5031 -7.7948 -1.7840 44 1 4.0069 -7.5235 -2.7092 45 1 6.1934 -7.3834 -4.4914 46 1 7.2661 -9.4923 -6.8428 47 1 4.5201 -3.2531 -2.3108 48 1 6.0382 -3.5274 -1.4225 49 1 4.4396 -2.0069 -0.2044 50 1 4.8432 -3.4759 0.7185 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001101587615.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:59:48 Heat of formation + Delta-G solvation = 20.891063 kcal Electronic energy + Delta-G solvation = -30066.973557 eV Core-core repulsion = 26097.258822 eV Total energy + Delta-G solvation = -3969.714735 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -46.08671 -41.44987 -39.95820 -37.58541 -35.85907 -35.43347 -33.80384 -32.96269 -32.09874 -31.38120 -29.37547 -28.15090 -27.51644 -26.73013 -25.02837 -24.51914 -24.00335 -23.04428 -21.99196 -20.94727 -19.58374 -19.06111 -18.87346 -18.63603 -17.44132 -17.08475 -16.65845 -16.40864 -15.94717 -15.64788 -15.43212 -15.21166 -15.10426 -14.80530 -14.67916 -14.44379 -14.26585 -14.12566 -14.11292 -13.86071 -13.52832 -13.20545 -13.07490 -13.03610 -12.81560 -12.75628 -12.62366 -12.34195 -12.16532 -12.07180 -11.96064 -11.87908 -11.73868 -11.42494 -11.37668 -11.24056 -11.03327 -10.91475 -10.79612 -10.56383 -9.73963 -8.91572 -7.92543 -5.18896 -0.30724 1.07142 1.42263 1.47244 1.47527 1.57547 1.81790 2.04862 2.57612 3.16607 3.28117 3.41173 3.64783 3.71243 3.76060 3.82808 3.93195 4.11107 4.17495 4.28274 4.29384 4.32742 4.37615 4.39929 4.55770 4.60433 4.74110 4.78967 4.83543 4.86794 4.90178 4.92295 4.96196 4.98818 5.02057 5.04140 5.12830 5.17402 5.26086 5.26336 5.28924 5.32920 5.40141 5.50313 5.55380 5.66808 5.70393 6.12242 6.31117 6.73750 7.06194 7.37421 8.17615 8.39656 9.31496 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.025613 B = 0.002356 C = 0.002264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.935083 B =11881.443344 C =12362.543375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.120 4.120 3 C 0.000 4.000 4 N -0.367 5.367 5 O 0.106 5.894 6 C -0.108 4.108 7 C 0.600 3.400 8 O -0.544 6.544 9 N -0.592 5.592 10 C 0.118 3.882 11 C -0.129 4.129 12 C -0.064 4.064 13 C -0.055 4.055 14 C -0.132 4.132 15 C -0.133 4.133 16 C 0.159 3.841 17 N -0.741 5.741 18 C -0.237 4.237 19 H 0.073 0.927 20 C -0.078 4.078 21 N -0.970 5.970 22 Si 0.969 3.031 23 H -0.267 1.267 24 H -0.295 1.295 25 H -0.294 1.294 26 C -0.126 4.126 27 C 0.095 3.905 28 H 0.089 0.911 29 H 0.101 0.899 30 H 0.069 0.931 31 H 0.233 0.767 32 H 0.091 0.909 33 H 0.085 0.915 34 H 0.061 0.939 35 H 0.078 0.922 36 H 0.083 0.917 37 H 0.068 0.932 38 H 0.029 0.971 39 H 0.049 0.951 40 H 0.054 0.946 41 H 0.029 0.971 42 H 0.075 0.925 43 H 0.015 0.985 44 H 0.021 0.979 45 H 0.376 0.624 46 H 0.249 0.751 47 H 0.064 0.936 48 H 0.096 0.904 49 H 0.105 0.895 50 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.739 22.096 16.334 29.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.125 4.125 3 C -0.178 4.178 4 N -0.071 5.071 5 O 0.039 5.961 6 C -0.173 4.173 7 C 0.387 3.613 8 O -0.423 6.423 9 N -0.323 5.323 10 C -0.004 4.004 11 C -0.167 4.167 12 C -0.083 4.083 13 C -0.055 4.055 14 C -0.189 4.189 15 C -0.190 4.190 16 C 0.033 3.967 17 N -0.384 5.384 18 C -0.370 4.370 19 H 0.091 0.909 20 C -0.270 4.270 21 N -0.622 5.622 22 Si 0.799 3.201 23 H -0.191 1.191 24 H -0.222 1.222 25 H -0.222 1.222 26 C -0.164 4.164 27 C -0.027 4.027 28 H 0.107 0.893 29 H 0.120 0.880 30 H 0.088 0.912 31 H 0.249 0.751 32 H 0.109 0.891 33 H 0.104 0.896 34 H 0.079 0.921 35 H 0.097 0.903 36 H 0.102 0.898 37 H 0.087 0.913 38 H 0.048 0.952 39 H 0.068 0.932 40 H 0.073 0.927 41 H 0.048 0.952 42 H 0.094 0.906 43 H 0.033 0.967 44 H 0.039 0.961 45 H 0.209 0.791 46 H 0.058 0.942 47 H 0.083 0.917 48 H 0.114 0.886 49 H 0.122 0.878 50 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -9.200 22.271 16.453 29.178 hybrid contribution -0.329 -1.278 -0.986 1.647 sum -9.529 20.993 15.467 27.762 Atomic orbital electron populations 1.20371 0.85152 1.04430 1.04076 1.22035 0.99931 0.90277 1.00259 1.25543 0.86612 1.03348 1.02275 1.73734 1.24434 0.92148 1.16828 1.85039 1.27668 1.15205 1.68139 1.23989 0.85287 0.96000 1.12022 1.16807 0.85142 0.82134 0.77266 1.90816 1.18530 1.80917 1.52000 1.48144 1.07401 1.06986 1.69804 1.21849 1.01208 0.78504 0.98819 1.22129 0.95619 1.01555 0.97443 1.21035 0.94497 0.95546 0.97194 1.20588 0.95807 0.93590 0.95546 1.21820 1.00137 1.00195 0.96756 1.21802 0.94540 1.01637 1.01033 1.20926 0.95033 0.92076 0.88655 1.42654 1.64257 1.05183 1.26329 1.19671 1.26314 0.86087 1.04885 0.90911 1.25507 1.01579 1.01968 0.97977 1.69822 1.41748 1.35651 1.14967 0.85121 0.76888 0.80629 0.77441 1.19121 1.22250 1.22160 1.22042 1.02346 0.94500 0.97467 1.22419 0.78635 1.01903 0.99752 0.89261 0.88045 0.91247 0.75062 0.89122 0.89618 0.92073 0.90326 0.89834 0.91287 0.95209 0.93173 0.92677 0.95201 0.90592 0.96673 0.96144 0.79090 0.94175 0.91742 0.88567 0.87799 0.88617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.03 9.90 71.24 0.71 -0.33 16 2 C -0.12 -1.94 6.36 -19.45 -0.12 -2.06 16 3 C 0.00 0.00 12.14 85.69 1.04 1.04 16 4 N -0.37 -6.80 12.04 -58.55 -0.71 -7.51 16 5 O 0.11 2.01 7.75 65.82 0.51 2.52 16 6 C -0.11 -2.12 6.99 24.39 0.17 -1.95 16 7 C 0.60 13.40 7.69 86.69 0.67 14.07 16 8 O -0.54 -14.66 14.64 -3.98 -0.06 -14.72 16 9 N -0.59 -11.43 2.97 -821.86 -2.44 -13.87 16 10 C 0.12 2.25 6.45 86.51 0.56 2.81 16 11 C -0.13 -2.81 4.66 30.82 0.14 -2.67 16 12 C -0.06 -1.36 1.51 -10.77 -0.02 -1.38 16 13 C -0.05 -1.61 0.33 -52.18 -0.02 -1.62 16 14 C -0.13 -4.06 7.59 71.98 0.55 -3.52 16 15 C -0.13 -3.89 7.95 71.98 0.57 -3.32 16 16 C 0.16 6.13 4.80 86.38 0.41 6.54 16 17 N -0.74 -37.25 5.01 -343.45 -1.72 -38.97 16 18 C -0.24 -13.31 9.99 84.03 0.84 -12.47 16 19 H 0.07 3.94 7.83 -2.91 -0.02 3.91 16 20 C -0.08 -4.54 5.50 84.86 0.47 -4.08 16 21 N -0.97 -59.90 13.06 21.65 0.28 -59.62 16 22 Si 0.97 46.66 29.55 68.60 2.03 48.68 16 23 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 24 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 25 H -0.29 -14.14 7.11 99.48 0.71 -13.44 16 26 C -0.13 -2.20 4.65 30.67 0.14 -2.06 16 27 C 0.09 1.48 6.33 86.36 0.55 2.03 16 28 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.07 1.17 6.88 -2.39 -0.02 1.15 16 31 H 0.23 1.19 8.06 -2.91 -0.02 1.16 16 32 H 0.09 1.45 8.14 -2.38 -0.02 1.43 16 33 H 0.09 1.82 7.03 -2.39 -0.02 1.80 16 34 H 0.06 1.47 6.51 -2.38 -0.02 1.46 16 35 H 0.08 1.85 6.36 -2.39 -0.02 1.83 16 36 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 37 H 0.07 1.77 6.46 -2.39 -0.02 1.75 16 38 H 0.03 1.12 6.86 -2.39 -0.02 1.10 16 39 H 0.05 1.54 6.46 -2.39 -0.02 1.52 16 40 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 41 H 0.03 1.09 6.86 -2.38 -0.02 1.07 16 42 H 0.08 1.76 6.40 -2.38 -0.02 1.74 16 43 H 0.02 0.60 8.14 -2.39 -0.02 0.58 16 44 H 0.02 0.80 6.40 -2.39 -0.02 0.78 16 45 H 0.38 20.13 5.36 -92.71 -0.50 19.63 16 46 H 0.25 14.92 8.31 -92.70 -0.77 14.15 16 47 H 0.06 1.25 6.51 -2.39 -0.02 1.24 16 48 H 0.10 1.48 6.36 -2.39 -0.02 1.46 16 49 H 0.10 1.64 3.82 -47.02 -0.18 1.46 16 50 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 Total: -1.00 -70.39 378.64 4.86 -65.53 By element: Atomic # 1 Polarization: 26.60 SS G_CDS: 0.30 Total: 26.90 kcal Atomic # 6 Polarization: -15.61 SS G_CDS: 6.66 Total: -8.95 kcal Atomic # 7 Polarization: -115.39 SS G_CDS: -4.58 Total: -119.97 kcal Atomic # 8 Polarization: -12.65 SS G_CDS: 0.45 Total: -12.20 kcal Atomic # 14 Polarization: 46.66 SS G_CDS: 2.03 Total: 48.68 kcal Total: -70.39 4.86 -65.53 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101587615.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.424 kcal (2) G-P(sol) polarization free energy of solvation -70.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.533 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds