Wall clock time and date at job start Tue Mar 31 2020 19:01:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 C 1.52998 * 109.51044 * 2 1 4 4 N 1.46499 * 109.47060 * 60.10614 * 3 2 1 5 5 C 1.34782 * 119.99795 * 180.02562 * 4 3 2 6 6 O 1.21281 * 119.99544 * 359.97438 * 5 4 3 7 7 C 1.50694 * 119.99869 * 179.97438 * 5 4 3 8 8 C 1.53002 * 109.47117 * 179.97438 * 7 5 4 9 9 C 1.52992 * 109.47215 * 179.97438 * 8 7 5 10 10 N 1.46507 * 109.47271 * 180.02562 * 9 8 7 11 11 C 1.36339 * 125.63874 * 269.69997 * 10 9 8 12 12 C 1.34851 * 108.21779 * 179.82731 * 11 10 9 13 13 C 1.40888 * 107.41680 * 0.42650 * 12 11 10 14 14 C 1.34854 * 107.41666 * 359.72861 * 13 12 11 15 15 C 1.53290 * 109.55014 * 239.87269 * 2 1 3 16 16 N 1.47232 * 108.40967 * 292.35570 * 15 2 1 17 17 C 1.36937 * 121.03256 * 129.46000 * 16 15 2 18 18 H 1.07999 * 119.99830 * 333.77469 * 17 16 15 19 19 C 1.38814 * 119.99671 * 153.77042 * 17 16 15 20 20 N 1.31617 * 119.99660 * 160.02496 * 19 17 16 21 21 Si 1.86793 * 120.00266 * 340.02129 * 19 17 16 22 22 H 1.48503 * 109.46760 * 91.88567 * 21 19 17 23 23 H 1.48497 * 109.47347 * 211.88792 * 21 19 17 24 24 H 1.48498 * 109.47201 * 331.89168 * 21 19 17 25 25 C 1.47155 * 117.98347 * 309.49012 * 16 15 2 26 26 C 1.53294 * 108.41729 * 50.51829 * 25 16 15 27 27 O 1.42960 * 109.50956 * 120.10422 * 2 1 3 28 28 H 1.09001 * 109.46460 * 299.89523 * 1 2 3 29 29 H 1.08998 * 109.46862 * 59.89749 * 1 2 3 30 30 H 1.08998 * 109.46926 * 179.89857 * 1 2 3 31 31 H 1.09004 * 109.46468 * 180.10168 * 3 2 1 32 32 H 1.08996 * 109.47418 * 300.09885 * 3 2 1 33 33 H 0.96992 * 120.00094 * 359.97438 * 4 3 2 34 34 H 1.08993 * 109.47471 * 300.00068 * 7 5 4 35 35 H 1.09005 * 109.47207 * 60.00128 * 7 5 4 36 36 H 1.09002 * 109.47316 * 300.00763 * 8 7 5 37 37 H 1.09003 * 109.46684 * 59.99697 * 8 7 5 38 38 H 1.09001 * 109.47780 * 300.00077 * 9 8 7 39 39 H 1.09005 * 109.47123 * 60.00614 * 9 8 7 40 40 H 1.08007 * 125.88877 * 359.95086 * 11 10 9 41 41 H 1.08000 * 126.29018 * 180.15424 * 12 11 10 42 42 H 1.08004 * 126.29010 * 179.74441 * 13 12 11 43 43 H 1.08000 * 125.88866 * 179.97438 * 14 13 12 44 44 H 1.09001 * 109.68378 * 52.07916 * 15 2 1 45 45 H 1.09000 * 109.68200 * 172.63044 * 15 2 1 46 46 H 0.97002 * 120.00062 * 179.97438 * 20 19 17 47 47 H 1.08998 * 109.68049 * 290.77118 * 25 16 15 48 48 H 1.09003 * 109.67731 * 170.25941 * 25 16 15 49 49 H 1.08998 * 109.51349 * 67.59796 * 26 25 16 50 50 H 1.08996 * 109.51070 * 187.70400 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0411 1.4421 0.0000 4 7 1.5553 2.1323 1.1974 5 6 1.8818 3.4225 1.4107 6 8 2.5780 4.0118 0.6114 7 6 1.3816 4.1326 2.6421 8 6 1.8927 5.5748 2.6422 9 6 1.3844 6.2959 3.8920 10 7 1.8733 7.6770 3.8918 11 6 3.0409 8.1065 4.4496 12 6 3.1432 9.4351 4.2428 13 6 1.9922 9.8424 3.5399 14 6 1.2331 8.7461 3.3386 15 6 2.0431 -0.7250 -1.2494 16 7 1.6979 -2.1517 -1.1337 17 6 1.0641 -2.8096 -2.1537 18 1 0.4437 -2.2611 -2.8469 19 6 1.2192 -4.1816 -2.2967 20 7 0.3423 -4.8740 -2.9924 21 14 2.6723 -5.0453 -1.5020 22 1 2.2861 -5.5207 -0.1492 23 1 3.0766 -6.2045 -2.3374 24 1 3.8095 -4.0971 -1.3874 25 6 2.0542 -2.8494 0.1120 26 6 1.5405 -2.0209 1.2951 27 8 2.0075 -0.6759 1.1658 28 1 -0.3632 0.5122 0.8910 29 1 -0.3633 0.5154 -0.8891 30 1 -0.3633 -1.0277 -0.0018 31 1 3.1311 1.4413 -0.0018 32 1 1.6767 1.9567 -0.8890 33 1 0.9982 1.6610 1.8364 34 1 0.2917 4.1331 2.6438 35 1 1.7461 3.6183 3.5314 36 1 2.9827 5.5740 2.6406 37 1 1.5286 6.0892 1.7528 38 1 0.2944 6.2968 3.8931 39 1 1.7483 5.7816 4.7816 40 1 3.7607 7.4888 4.9662 41 1 3.9559 10.0710 4.5616 42 1 1.7604 10.8478 3.2206 43 1 0.2818 8.7197 2.8279 44 1 1.5715 -0.3044 -2.1376 45 1 3.1251 -0.6139 -1.3201 46 1 0.4508 -5.8327 -3.0927 47 1 3.1373 -2.9521 0.1784 48 1 1.5904 -3.8358 0.1257 49 1 0.4506 -2.0290 1.2993 50 1 1.9115 -2.4479 2.2268 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108415144.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:01:19 Heat of formation + Delta-G solvation = -4.933693 kcal Electronic energy + Delta-G solvation = -28742.168676 eV Core-core repulsion = 24771.334095 eV Total energy + Delta-G solvation = -3970.834581 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.34389 -40.08701 -39.11678 -35.57158 -35.07550 -34.49963 -32.36105 -31.62359 -31.31291 -28.99611 -28.49838 -27.57720 -26.47637 -25.52954 -23.23910 -22.76120 -21.50273 -20.69550 -20.44068 -20.18949 -19.11342 -17.95608 -17.14824 -16.82955 -16.41755 -16.19000 -15.66233 -15.51715 -14.94019 -14.75914 -14.54581 -14.26753 -14.10520 -13.92200 -13.83523 -13.63124 -13.33687 -13.02042 -12.64142 -12.47829 -12.43154 -12.34536 -12.28609 -12.14306 -12.00288 -11.90881 -11.67093 -11.51272 -11.25457 -11.08054 -10.88799 -10.44157 -10.35385 -10.01175 -9.73676 -9.59514 -9.47383 -9.07559 -8.84729 -8.64524 -8.38373 -7.09453 -6.05243 -3.42756 2.04042 2.54478 2.64049 2.85137 3.13872 3.22107 3.41524 3.44015 3.94812 4.25400 4.37985 4.42437 4.49353 4.67501 4.78323 4.78842 4.88151 4.98799 4.99612 5.08404 5.15318 5.18690 5.23309 5.31716 5.33397 5.43169 5.58545 5.66106 5.70882 5.75508 5.80604 5.82669 5.90929 6.00683 6.06763 6.09596 6.15027 6.16693 6.37371 6.41223 6.43602 6.50361 6.66798 6.76923 7.00435 7.14376 7.44004 7.54186 7.77515 8.14275 8.19972 8.77722 9.58761 9.94492 11.10211 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.038208 B = 0.001799 C = 0.001782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.647117 B =15564.428414 C =15709.659750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.087 3.913 3 C 0.138 3.862 4 N -0.718 5.718 5 C 0.509 3.491 6 O -0.545 6.545 7 C -0.138 4.138 8 C -0.119 4.119 9 C 0.104 3.896 10 N -0.446 5.446 11 C -0.016 4.016 12 C -0.205 4.205 13 C -0.205 4.205 14 C -0.016 4.016 15 C 0.130 3.870 16 N -0.603 5.603 17 C -0.261 4.261 18 H 0.088 0.912 19 C 0.024 3.976 20 N -0.906 5.906 21 Si 0.884 3.116 22 H -0.289 1.289 23 H -0.302 1.302 24 H -0.271 1.271 25 C 0.089 3.911 26 C 0.046 3.954 27 O -0.380 6.380 28 H 0.047 0.953 29 H 0.063 0.937 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.081 0.919 33 H 0.404 0.596 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.090 0.910 39 H 0.090 0.910 40 H 0.159 0.841 41 H 0.133 0.867 42 H 0.133 0.867 43 H 0.159 0.841 44 H 0.074 0.926 45 H 0.034 0.966 46 H 0.264 0.736 47 H 0.034 0.966 48 H 0.081 0.919 49 H 0.056 0.944 50 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.177 20.809 16.667 26.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.046 3.954 3 C 0.014 3.986 4 N -0.369 5.369 5 C 0.295 3.705 6 O -0.422 6.422 7 C -0.179 4.179 8 C -0.158 4.158 9 C -0.018 4.018 10 N -0.122 5.122 11 C -0.145 4.145 12 C -0.229 4.229 13 C -0.229 4.229 14 C -0.145 4.145 15 C 0.004 3.996 16 N -0.328 5.328 17 C -0.389 4.389 18 H 0.106 0.894 19 C -0.175 4.175 20 N -0.548 5.548 21 Si 0.715 3.285 22 H -0.216 1.216 23 H -0.230 1.230 24 H -0.196 1.196 25 C -0.037 4.037 26 C -0.032 4.032 27 O -0.300 6.300 28 H 0.066 0.934 29 H 0.082 0.918 30 H 0.098 0.902 31 H 0.092 0.908 32 H 0.099 0.901 33 H 0.239 0.761 34 H 0.114 0.886 35 H 0.114 0.886 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.108 0.892 39 H 0.108 0.892 40 H 0.176 0.824 41 H 0.151 0.849 42 H 0.151 0.849 43 H 0.176 0.824 44 H 0.092 0.908 45 H 0.052 0.948 46 H 0.074 0.926 47 H 0.052 0.948 48 H 0.099 0.901 49 H 0.074 0.926 50 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 0.258 20.776 16.105 26.288 hybrid contribution 0.390 -1.196 0.472 1.343 sum 0.648 19.580 16.577 25.663 Atomic orbital electron populations 1.22258 0.95058 1.03957 1.01151 1.22231 0.93988 0.90540 0.88684 1.21348 0.99909 0.89671 0.87702 1.45949 1.53557 1.11715 1.25725 1.20524 0.80484 0.81887 0.87572 1.90726 1.38071 1.66187 1.47234 1.21565 1.02781 0.96116 0.97451 1.21699 1.02695 0.93651 0.97741 1.21910 1.00385 0.79772 0.99726 1.44137 1.17435 1.07109 1.43517 1.21842 0.90945 0.95976 1.05779 1.20902 1.00578 0.94461 1.06987 1.20903 0.96868 0.98170 1.06987 1.21839 1.00520 0.86462 1.05721 1.21477 0.97747 0.85511 0.94900 1.44315 1.69317 1.05669 1.13483 1.18888 1.21848 0.91112 1.07058 0.89394 1.25242 0.97951 0.96479 0.97813 1.69816 1.34324 1.07095 1.43613 0.86972 0.85155 0.78893 0.77522 1.21643 1.23016 1.19591 1.22027 0.98207 0.96807 0.86642 1.23090 0.98970 0.82438 0.98717 1.87833 1.72922 1.26097 1.43111 0.93383 0.91762 0.90192 0.90833 0.90054 0.76106 0.88606 0.88553 0.90314 0.90317 0.89194 0.89182 0.82369 0.84930 0.84925 0.82362 0.90805 0.94839 0.92641 0.94829 0.90090 0.92565 0.89691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.39 7.92 37.16 0.29 -2.10 16 2 C 0.09 1.33 0.76 -90.47 -0.07 1.26 16 3 C 0.14 1.87 4.82 -4.04 -0.02 1.85 16 4 N -0.72 -8.02 5.15 -60.30 -0.31 -8.33 16 5 C 0.51 5.80 7.83 -10.99 -0.09 5.71 16 6 O -0.54 -8.52 15.98 5.56 0.09 -8.43 16 7 C -0.14 -0.92 5.70 -27.88 -0.16 -1.08 16 8 C -0.12 -0.90 4.83 -26.73 -0.13 -1.03 16 9 C 0.10 0.59 6.09 -4.04 -0.02 0.56 16 10 N -0.45 -3.71 2.75 -117.12 -0.32 -4.03 16 11 C -0.02 -0.14 11.43 -16.75 -0.19 -0.33 16 12 C -0.20 -1.92 10.86 -39.78 -0.43 -2.35 16 13 C -0.20 -1.92 10.86 -39.78 -0.43 -2.35 16 14 C -0.02 -0.14 11.43 -16.75 -0.19 -0.33 16 15 C 0.13 2.45 5.41 -3.49 -0.02 2.43 16 16 N -0.60 -13.59 2.36 -171.76 -0.41 -13.99 16 17 C -0.26 -6.96 10.10 -15.06 -0.15 -7.11 16 18 H 0.09 2.50 8.06 -52.49 -0.42 2.07 16 19 C 0.02 0.68 5.26 -17.43 -0.09 0.59 16 20 N -0.91 -26.88 13.97 55.49 0.78 -26.10 16 21 Si 0.88 21.77 24.28 -169.99 -4.13 17.64 16 22 H -0.29 -6.77 6.58 56.52 0.37 -6.40 16 23 H -0.30 -7.62 7.11 56.52 0.40 -7.22 16 24 H -0.27 -6.66 6.54 56.52 0.37 -6.29 16 25 C 0.09 1.84 4.38 -3.53 -0.02 1.83 16 26 C 0.05 0.76 6.60 37.31 0.25 1.00 16 27 O -0.38 -6.13 9.97 -35.23 -0.35 -6.48 16 28 H 0.05 0.56 6.87 -51.93 -0.36 0.20 16 29 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 30 H 0.08 1.37 6.12 -51.93 -0.32 1.05 16 31 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.40 3.81 7.20 -40.82 -0.29 3.51 16 34 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.10 0.47 8.14 -51.93 -0.42 0.04 16 36 H 0.08 0.75 8.10 -51.93 -0.42 0.33 16 37 H 0.08 0.74 8.10 -51.93 -0.42 0.32 16 38 H 0.09 0.37 8.14 -51.93 -0.42 -0.06 16 39 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.16 1.03 8.06 -52.48 -0.42 0.60 16 41 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 42 H 0.13 1.04 8.06 -52.48 -0.42 0.61 16 43 H 0.16 1.01 8.06 -52.49 -0.42 0.59 16 44 H 0.07 1.35 7.96 -51.93 -0.41 0.94 16 45 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 46 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 47 H 0.03 0.72 6.86 -51.93 -0.36 0.36 16 48 H 0.08 1.81 4.60 -51.93 -0.24 1.57 16 49 H 0.06 0.91 6.25 -51.93 -0.32 0.59 16 50 H 0.09 1.20 8.14 -51.93 -0.42 0.77 16 LS Contribution 392.92 15.07 5.92 5.92 Total: -1.00 -33.45 392.92 -8.46 -41.91 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: -8.26 Total: 3.34 kcal Atomic # 6 Polarization: 0.03 SS G_CDS: -1.47 Total: -1.44 kcal Atomic # 7 Polarization: -52.19 SS G_CDS: -0.26 Total: -52.45 kcal Atomic # 8 Polarization: -14.65 SS G_CDS: -0.26 Total: -14.91 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.13 Total: 17.64 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -33.45 -8.46 -41.91 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108415144.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.976 kcal (2) G-P(sol) polarization free energy of solvation -33.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds