Wall clock time and date at job start Tue Mar 31 2020 19:01:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 C 1.52998 * 109.51044 * 2 1 4 4 N 1.46499 * 109.47060 * 60.10614 * 3 2 1 5 5 C 1.34782 * 119.99795 * 180.02562 * 4 3 2 6 6 O 1.21281 * 119.99544 * 359.97438 * 5 4 3 7 7 C 1.50694 * 119.99869 * 179.97438 * 5 4 3 8 8 C 1.53002 * 109.47117 * 179.97438 * 7 5 4 9 9 C 1.52992 * 109.47215 * 179.97438 * 8 7 5 10 10 N 1.46507 * 109.47271 * 180.02562 * 9 8 7 11 11 C 1.36339 * 125.63874 * 269.69997 * 10 9 8 12 12 C 1.34851 * 108.21779 * 179.82731 * 11 10 9 13 13 C 1.40888 * 107.41680 * 0.42650 * 12 11 10 14 14 C 1.34854 * 107.41666 * 359.72861 * 13 12 11 15 15 C 1.53290 * 109.55014 * 239.87269 * 2 1 3 16 16 N 1.47232 * 108.40967 * 292.35570 * 15 2 1 17 17 C 1.36937 * 121.03256 * 129.46000 * 16 15 2 18 18 H 1.07999 * 119.99830 * 333.77469 * 17 16 15 19 19 C 1.38814 * 119.99671 * 153.77042 * 17 16 15 20 20 N 1.31617 * 119.99660 * 160.02496 * 19 17 16 21 21 Si 1.86793 * 120.00266 * 340.02129 * 19 17 16 22 22 H 1.48503 * 109.46760 * 91.88567 * 21 19 17 23 23 H 1.48497 * 109.47347 * 211.88792 * 21 19 17 24 24 H 1.48498 * 109.47201 * 331.89168 * 21 19 17 25 25 C 1.47155 * 117.98347 * 309.49012 * 16 15 2 26 26 C 1.53294 * 108.41729 * 50.51829 * 25 16 15 27 27 O 1.42960 * 109.50956 * 120.10422 * 2 1 3 28 28 H 1.09001 * 109.46460 * 299.89523 * 1 2 3 29 29 H 1.08998 * 109.46862 * 59.89749 * 1 2 3 30 30 H 1.08998 * 109.46926 * 179.89857 * 1 2 3 31 31 H 1.09004 * 109.46468 * 180.10168 * 3 2 1 32 32 H 1.08996 * 109.47418 * 300.09885 * 3 2 1 33 33 H 0.96992 * 120.00094 * 359.97438 * 4 3 2 34 34 H 1.08993 * 109.47471 * 300.00068 * 7 5 4 35 35 H 1.09005 * 109.47207 * 60.00128 * 7 5 4 36 36 H 1.09002 * 109.47316 * 300.00763 * 8 7 5 37 37 H 1.09003 * 109.46684 * 59.99697 * 8 7 5 38 38 H 1.09001 * 109.47780 * 300.00077 * 9 8 7 39 39 H 1.09005 * 109.47123 * 60.00614 * 9 8 7 40 40 H 1.08007 * 125.88877 * 359.95086 * 11 10 9 41 41 H 1.08000 * 126.29018 * 180.15424 * 12 11 10 42 42 H 1.08004 * 126.29010 * 179.74441 * 13 12 11 43 43 H 1.08000 * 125.88866 * 179.97438 * 14 13 12 44 44 H 1.09001 * 109.68378 * 52.07916 * 15 2 1 45 45 H 1.09000 * 109.68200 * 172.63044 * 15 2 1 46 46 H 0.97002 * 120.00062 * 179.97438 * 20 19 17 47 47 H 1.08998 * 109.68049 * 290.77118 * 25 16 15 48 48 H 1.09003 * 109.67731 * 170.25941 * 25 16 15 49 49 H 1.08998 * 109.51349 * 67.59796 * 26 25 16 50 50 H 1.08996 * 109.51070 * 187.70400 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0411 1.4421 0.0000 4 7 1.5553 2.1323 1.1974 5 6 1.8818 3.4225 1.4107 6 8 2.5780 4.0118 0.6114 7 6 1.3816 4.1326 2.6421 8 6 1.8927 5.5748 2.6422 9 6 1.3844 6.2959 3.8920 10 7 1.8733 7.6770 3.8918 11 6 3.0409 8.1065 4.4496 12 6 3.1432 9.4351 4.2428 13 6 1.9922 9.8424 3.5399 14 6 1.2331 8.7461 3.3386 15 6 2.0431 -0.7250 -1.2494 16 7 1.6979 -2.1517 -1.1337 17 6 1.0641 -2.8096 -2.1537 18 1 0.4437 -2.2611 -2.8469 19 6 1.2192 -4.1816 -2.2967 20 7 0.3423 -4.8740 -2.9924 21 14 2.6723 -5.0453 -1.5020 22 1 2.2861 -5.5207 -0.1492 23 1 3.0766 -6.2045 -2.3374 24 1 3.8095 -4.0971 -1.3874 25 6 2.0542 -2.8494 0.1120 26 6 1.5405 -2.0209 1.2951 27 8 2.0075 -0.6759 1.1658 28 1 -0.3632 0.5122 0.8910 29 1 -0.3633 0.5154 -0.8891 30 1 -0.3633 -1.0277 -0.0018 31 1 3.1311 1.4413 -0.0018 32 1 1.6767 1.9567 -0.8890 33 1 0.9982 1.6610 1.8364 34 1 0.2917 4.1331 2.6438 35 1 1.7461 3.6183 3.5314 36 1 2.9827 5.5740 2.6406 37 1 1.5286 6.0892 1.7528 38 1 0.2944 6.2968 3.8931 39 1 1.7483 5.7816 4.7816 40 1 3.7607 7.4888 4.9662 41 1 3.9559 10.0710 4.5616 42 1 1.7604 10.8478 3.2206 43 1 0.2818 8.7197 2.8279 44 1 1.5715 -0.3044 -2.1376 45 1 3.1251 -0.6139 -1.3201 46 1 0.4508 -5.8327 -3.0927 47 1 3.1373 -2.9521 0.1784 48 1 1.5904 -3.8358 0.1257 49 1 0.4506 -2.0290 1.2993 50 1 1.9115 -2.4479 2.2268 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108415144.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:01:18 Heat of formation + Delta-G solvation = -27.052511 kcal Electronic energy + Delta-G solvation = -28743.127820 eV Core-core repulsion = 24771.334095 eV Total energy + Delta-G solvation = -3971.793724 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.93585 -41.21216 -40.29861 -36.82579 -36.04038 -35.71362 -33.78175 -33.25869 -32.12492 -29.96342 -29.60839 -28.44501 -28.00608 -26.58979 -24.82133 -23.71124 -22.81747 -21.32277 -21.31758 -20.78380 -20.48509 -18.99934 -18.61875 -17.78002 -17.56463 -17.31351 -16.96423 -16.63592 -16.03591 -15.84556 -15.64032 -15.52783 -15.43026 -15.34822 -14.70118 -14.56524 -14.27562 -14.10557 -14.04409 -13.79471 -13.52717 -13.30881 -13.22006 -12.97556 -12.94478 -12.91252 -12.70889 -12.60364 -12.56676 -12.35167 -12.14873 -12.10203 -11.77816 -11.57179 -11.29570 -11.09467 -10.91509 -10.49349 -10.07222 -9.47369 -9.01998 -8.96287 -8.19753 -5.52811 1.25027 1.39820 1.41480 1.47284 1.69130 2.05074 2.18060 2.31867 2.37051 2.67427 3.00526 3.20422 3.70628 3.81790 3.83144 3.88193 3.95722 3.97656 4.24795 4.26817 4.29030 4.32863 4.39166 4.43108 4.45535 4.53592 4.56439 4.66443 4.67088 4.71623 4.74899 4.77232 4.82192 4.84327 4.93772 5.01463 5.03972 5.05009 5.24322 5.37327 5.42970 5.43702 5.47570 5.77155 6.07579 6.12894 6.22162 6.37714 6.58323 6.60522 6.80856 7.29710 7.53466 7.94033 8.99445 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.038208 B = 0.001799 C = 0.001782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.647117 B =15564.428414 C =15709.659750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.099 3.901 3 C 0.147 3.853 4 N -0.709 5.709 5 C 0.505 3.495 6 O -0.594 6.594 7 C -0.126 4.126 8 C -0.112 4.112 9 C 0.105 3.895 10 N -0.450 5.450 11 C -0.025 4.025 12 C -0.230 4.230 13 C -0.230 4.230 14 C -0.024 4.024 15 C 0.122 3.878 16 N -0.615 5.615 17 C -0.245 4.245 18 H 0.058 0.942 19 C -0.032 4.032 20 N -0.953 5.953 21 Si 0.945 3.055 22 H -0.268 1.268 23 H -0.312 1.312 24 H -0.270 1.270 25 C 0.080 3.920 26 C 0.055 3.945 27 O -0.375 6.375 28 H 0.082 0.918 29 H 0.064 0.936 30 H 0.052 0.948 31 H 0.059 0.941 32 H 0.081 0.919 33 H 0.416 0.584 34 H 0.129 0.871 35 H 0.126 0.874 36 H 0.053 0.947 37 H 0.055 0.945 38 H 0.114 0.886 39 H 0.113 0.887 40 H 0.178 0.822 41 H 0.139 0.861 42 H 0.139 0.861 43 H 0.179 0.821 44 H 0.069 0.931 45 H 0.031 0.969 46 H 0.262 0.738 47 H 0.031 0.969 48 H 0.064 0.936 49 H 0.062 0.938 50 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.516 21.441 19.929 29.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.058 3.942 3 C 0.021 3.979 4 N -0.362 5.362 5 C 0.294 3.706 6 O -0.475 6.475 7 C -0.166 4.166 8 C -0.151 4.151 9 C -0.015 4.015 10 N -0.125 5.125 11 C -0.155 4.155 12 C -0.254 4.254 13 C -0.254 4.254 14 C -0.155 4.155 15 C -0.003 4.003 16 N -0.341 5.341 17 C -0.374 4.374 18 H 0.076 0.924 19 C -0.227 4.227 20 N -0.599 5.599 21 Si 0.774 3.226 22 H -0.194 1.194 23 H -0.242 1.242 24 H -0.196 1.196 25 C -0.045 4.045 26 C -0.023 4.023 27 O -0.294 6.294 28 H 0.101 0.899 29 H 0.083 0.917 30 H 0.071 0.929 31 H 0.078 0.922 32 H 0.099 0.901 33 H 0.254 0.746 34 H 0.147 0.853 35 H 0.144 0.856 36 H 0.072 0.928 37 H 0.073 0.927 38 H 0.132 0.868 39 H 0.131 0.869 40 H 0.195 0.805 41 H 0.156 0.844 42 H 0.157 0.843 43 H 0.196 0.804 44 H 0.088 0.912 45 H 0.049 0.951 46 H 0.071 0.929 47 H 0.049 0.951 48 H 0.082 0.918 49 H 0.080 0.920 50 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -0.084 21.425 19.430 28.924 hybrid contribution 0.498 -1.293 -0.606 1.512 sum 0.414 20.132 18.824 27.565 Atomic orbital electron populations 1.22186 0.93957 1.02667 1.02936 1.22037 0.94616 0.90859 0.86670 1.21069 0.99051 0.88674 0.89058 1.45846 1.53470 1.11812 1.25036 1.21392 0.79376 0.81520 0.88342 1.90717 1.40334 1.67157 1.49284 1.21593 1.04612 0.94704 0.95725 1.21575 1.01092 0.94519 0.97879 1.22081 1.01764 0.78295 0.99395 1.44369 1.17183 1.08030 1.42936 1.22225 0.91495 0.96113 1.05685 1.21188 1.01125 0.95341 1.07775 1.21190 0.97429 0.99050 1.07771 1.22229 1.01196 0.86525 1.05504 1.21667 0.97722 0.83904 0.97051 1.44386 1.69255 1.06977 1.13444 1.18815 1.20484 0.91027 1.07084 0.92437 1.25821 1.00137 0.97382 0.99361 1.69938 1.36228 1.07257 1.46465 0.85982 0.81827 0.77318 0.77468 1.19413 1.24153 1.19556 1.22135 0.97957 0.96917 0.87485 1.23045 0.99338 0.81892 0.97980 1.87854 1.73031 1.25748 1.42811 0.89949 0.91716 0.92896 0.92231 0.90120 0.74634 0.85304 0.85587 0.92830 0.92658 0.86821 0.86919 0.80495 0.84363 0.84345 0.80427 0.91204 0.95094 0.92893 0.95092 0.91765 0.92008 0.86238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.22 7.92 71.99 0.57 -3.65 16 2 C 0.10 2.84 0.76 -10.69 -0.01 2.83 16 3 C 0.15 3.71 4.82 86.38 0.42 4.13 16 4 N -0.71 -13.61 5.15 -463.07 -2.39 -16.00 16 5 C 0.51 10.21 7.83 87.65 0.69 10.89 16 6 O -0.59 -18.14 15.98 -3.03 -0.05 -18.19 16 7 C -0.13 -1.16 5.70 29.85 0.17 -0.99 16 8 C -0.11 -1.43 4.83 30.59 0.15 -1.28 16 9 C 0.11 0.83 6.09 86.38 0.53 1.35 16 10 N -0.45 -6.60 2.75 -524.46 -1.44 -8.04 16 11 C -0.03 -0.41 11.43 83.21 0.95 0.55 16 12 C -0.23 -4.25 10.86 22.14 0.24 -4.01 16 13 C -0.23 -4.24 10.86 22.14 0.24 -4.00 16 14 C -0.02 -0.39 11.43 83.21 0.95 0.56 16 15 C 0.12 4.54 5.41 86.34 0.47 5.01 16 16 N -0.62 -27.53 2.36 -697.34 -1.65 -29.18 16 17 C -0.24 -13.31 10.10 84.03 0.85 -12.46 16 18 H 0.06 3.41 8.06 -2.91 -0.02 3.39 16 19 C -0.03 -1.81 5.26 84.86 0.45 -1.36 16 20 N -0.95 -58.15 13.97 21.65 0.30 -57.85 16 21 Si 0.94 45.41 24.28 68.60 1.67 47.07 16 22 H -0.27 -11.84 6.58 99.48 0.65 -11.18 16 23 H -0.31 -15.44 7.11 99.48 0.71 -14.73 16 24 H -0.27 -12.81 6.54 99.48 0.65 -12.16 16 25 C 0.08 3.18 4.38 86.35 0.38 3.56 16 26 C 0.06 1.65 6.60 72.08 0.48 2.12 16 27 O -0.38 -10.86 9.97 -148.98 -1.49 -12.35 16 28 H 0.08 1.59 6.87 -2.39 -0.02 1.58 16 29 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.05 1.72 6.12 -2.39 -0.01 1.70 16 31 H 0.06 1.70 8.14 -2.38 -0.02 1.68 16 32 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 33 H 0.42 5.94 7.20 -92.71 -0.67 5.27 16 34 H 0.13 0.44 8.14 -2.39 -0.02 0.42 16 35 H 0.13 0.52 8.14 -2.38 -0.02 0.50 16 36 H 0.05 0.96 8.10 -2.39 -0.02 0.94 16 37 H 0.05 0.97 8.10 -2.39 -0.02 0.95 16 38 H 0.11 0.40 8.14 -2.39 -0.02 0.38 16 39 H 0.11 0.42 8.14 -2.38 -0.02 0.40 16 40 H 0.18 1.98 8.06 -2.91 -0.02 1.96 16 41 H 0.14 2.19 8.06 -2.91 -0.02 2.17 16 42 H 0.14 2.18 8.06 -2.91 -0.02 2.16 16 43 H 0.18 1.95 8.06 -2.91 -0.02 1.93 16 44 H 0.07 2.60 7.96 -2.39 -0.02 2.58 16 45 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 46 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 47 H 0.03 1.26 6.86 -2.39 -0.02 1.24 16 48 H 0.06 2.78 4.60 -2.39 -0.01 2.77 16 49 H 0.06 1.82 6.25 -2.39 -0.01 1.80 16 50 H 0.12 2.81 8.14 -2.39 -0.02 2.79 16 Total: -1.00 -76.01 392.92 2.62 -73.38 By element: Atomic # 1 Polarization: 17.74 SS G_CDS: 0.15 Total: 17.89 kcal Atomic # 6 Polarization: -4.26 SS G_CDS: 7.51 Total: 3.25 kcal Atomic # 7 Polarization: -105.89 SS G_CDS: -5.17 Total: -111.06 kcal Atomic # 8 Polarization: -29.00 SS G_CDS: -1.53 Total: -30.54 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 1.67 Total: 47.07 kcal Total: -76.01 2.62 -73.38 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108415144.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.332 kcal (2) G-P(sol) polarization free energy of solvation -76.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds