Wall clock time and date at job start Tue Mar 31 2020 18:56:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50703 * 110.85626 * 2 1 4 4 O 1.21277 * 119.99598 * 236.20608 * 3 2 1 5 5 N 1.34778 * 119.99999 * 56.20818 * 3 2 1 6 6 C 1.48118 * 127.84313 * 0.02760 * 5 3 2 7 7 C 1.54327 * 104.69659 * 140.22348 * 6 5 3 8 8 H 1.09004 * 112.58949 * 262.02923 * 7 6 5 9 9 C 1.54154 * 109.65781 * 137.79872 * 7 6 5 10 10 C 1.54841 * 104.32506 * 223.42146 * 9 7 6 11 11 C 1.54839 * 102.73866 * 38.18480 * 10 9 7 12 12 C 1.54160 * 104.32836 * 321.81475 * 11 10 9 13 13 C 1.52994 * 111.82609 * 261.24511 * 12 11 10 14 14 N 1.46510 * 109.46884 * 298.98514 * 13 12 11 15 15 C 1.36935 * 119.99776 * 180.02562 * 14 13 12 16 16 H 1.07997 * 120.00259 * 359.97438 * 15 14 13 17 17 C 1.38813 * 119.99472 * 179.97438 * 15 14 13 18 18 N 1.31618 * 120.00240 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99684 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46845 * 90.00337 * 19 17 15 21 21 H 1.48503 * 109.47399 * 209.99827 * 19 17 15 22 22 H 1.48498 * 109.47295 * 330.00433 * 19 17 15 23 23 C 1.50621 * 127.74187 * 180.30586 * 5 3 2 24 24 C 1.54477 * 110.97220 * 236.20670 * 2 1 3 25 25 N 1.46756 * 105.47493 * 267.26306 * 24 2 1 26 26 C 1.34420 * 111.30268 * 342.97820 * 25 24 2 27 27 O 1.21285 * 124.94323 * 180.40191 * 26 25 24 28 28 C 1.51280 * 110.11268 * 0.41371 * 26 25 24 29 29 H 1.09003 * 109.47130 * 60.70447 * 1 2 3 30 30 H 1.09007 * 109.47277 * 180.69941 * 1 2 3 31 31 H 1.09004 * 109.47483 * 300.69886 * 1 2 3 32 32 H 1.09004 * 110.39513 * 21.41108 * 6 5 3 33 33 H 1.09008 * 110.38908 * 259.02687 * 6 5 3 34 34 H 1.09006 * 110.46564 * 104.71145 * 9 7 6 35 35 H 1.08997 * 110.57209 * 342.18400 * 9 7 6 36 36 H 1.09004 * 110.75787 * 279.87437 * 10 9 7 37 37 H 1.09005 * 110.92031 * 156.57354 * 10 9 7 38 38 H 1.08998 * 110.46353 * 203.10275 * 11 10 9 39 39 H 1.09003 * 110.56903 * 80.57593 * 11 10 9 40 40 H 1.08995 * 109.47727 * 178.98526 * 13 12 11 41 41 H 1.09001 * 109.47087 * 58.98003 * 13 12 11 42 42 H 0.96998 * 119.99423 * 359.97438 * 14 13 12 43 43 H 0.97000 * 119.99789 * 359.97438 * 18 17 15 44 44 H 1.09004 * 110.77783 * 101.42587 * 23 5 3 45 45 H 1.08999 * 111.15550 * 338.24102 * 23 5 3 46 46 H 1.09004 * 110.24374 * 26.26254 * 24 2 1 47 47 H 1.09000 * 110.24426 * 148.17136 * 24 2 1 48 48 H 0.97008 * 124.35069 * 163.00689 * 25 24 2 49 49 H 1.08996 * 110.48327 * 257.56799 * 28 26 25 50 50 H 1.09005 * 110.48690 * 134.92861 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0665 1.4083 0.0000 4 8 2.8283 1.7669 -0.8729 5 7 1.6998 2.2691 0.9700 6 6 0.7884 2.0186 2.1104 7 6 1.4426 2.7488 3.3022 8 1 2.0258 2.0793 3.9345 9 6 0.3598 3.4808 4.1196 10 6 0.9814 4.8655 4.4256 11 6 1.7343 5.1991 3.1143 12 6 2.3229 3.8492 2.6584 13 6 3.7941 3.7076 3.0535 14 7 4.5762 4.7676 2.4121 15 6 5.9275 4.8429 2.6204 16 1 6.4167 4.1212 3.2577 17 6 6.6685 5.8469 2.0122 18 7 6.0723 6.7261 1.2350 19 14 8.5118 5.9501 2.2968 20 1 9.2175 5.1471 1.2660 21 1 8.9483 7.3666 2.2052 22 1 8.8350 5.4187 3.6452 23 6 2.1208 3.7059 1.1351 24 6 2.0829 -0.8023 -1.1987 25 7 2.2861 -2.1663 -0.6967 26 6 2.2968 -2.1955 0.6471 27 8 2.4539 -3.1929 1.3190 28 6 2.0841 -0.8033 1.1994 29 1 -0.3633 0.5029 -0.8963 30 1 -0.3634 -1.0276 0.0125 31 1 -0.3634 0.5247 0.8837 32 1 0.7174 0.9498 2.3122 33 1 -0.1986 2.4337 1.9060 34 1 0.1524 2.9433 5.0450 35 1 -0.5519 3.5936 3.5331 36 1 1.6754 4.8008 5.2637 37 1 0.2057 5.6050 4.6246 38 1 2.5315 5.9175 3.3049 39 1 1.0444 5.5866 2.3646 40 1 4.1655 2.7355 2.7296 41 1 3.8891 3.7905 4.1362 42 1 4.1367 5.4155 1.8394 43 1 5.1152 6.6722 1.0870 44 1 1.3369 4.3805 0.7908 45 1 3.0536 3.9056 0.6078 46 1 1.3615 -0.8047 -2.0159 47 1 3.0292 -0.3770 -1.5329 48 1 2.3986 -2.9465 -1.2621 49 1 3.0291 -0.3791 1.5388 50 1 1.3593 -0.8224 2.0134 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001112487651.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:56:06 Heat of formation + Delta-G solvation = -80.002608 kcal Electronic energy + Delta-G solvation = -31017.799645 eV Core-core repulsion = 27043.709832 eV Total energy + Delta-G solvation = -3974.089813 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -42.31991 -41.20491 -39.76038 -37.55758 -36.81444 -35.83557 -33.92033 -33.36240 -31.01965 -30.34026 -29.57276 -27.46273 -27.31675 -26.54827 -25.46857 -24.25894 -22.61868 -21.84004 -21.44139 -19.99290 -19.75244 -19.30457 -18.58387 -17.76924 -17.39196 -16.95026 -16.77764 -16.40787 -16.07875 -15.88371 -15.76157 -15.51403 -15.14347 -14.96870 -14.83740 -14.55080 -14.49522 -14.31875 -13.96534 -13.63248 -13.52227 -13.21036 -13.08060 -12.84422 -12.77672 -12.62707 -12.41344 -12.27038 -12.07155 -11.90507 -11.88414 -11.75842 -11.62531 -11.47094 -11.43129 -11.26438 -11.17289 -10.97008 -10.73695 -10.22337 -9.80658 -9.12404 -8.43569 -5.35961 1.38118 1.47869 1.53403 1.64224 1.71893 1.78544 2.30341 2.66796 2.98653 3.13464 3.30691 3.35213 3.42445 3.58810 3.62736 3.69704 3.84597 3.99427 4.12394 4.16081 4.24532 4.38236 4.39254 4.39309 4.44421 4.50925 4.53486 4.65368 4.69084 4.73002 4.77649 4.82660 4.84646 4.86561 4.93075 4.98290 5.04266 5.16420 5.17915 5.22533 5.27265 5.37729 5.42995 5.53684 5.55452 5.65265 5.88028 6.46588 6.51668 7.01349 7.06986 7.10575 7.97603 8.08053 9.08578 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010583 B = 0.003881 C = 0.003226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2645.118546 B = 7213.527073 C = 8678.250283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.079 4.079 3 C 0.541 3.459 4 O -0.586 6.586 5 N -0.615 5.615 6 C 0.103 3.897 7 C -0.094 4.094 8 H 0.087 0.913 9 C -0.101 4.101 10 C -0.118 4.118 11 C -0.114 4.114 12 C -0.072 4.072 13 C 0.182 3.818 14 N -0.749 5.749 15 C -0.336 4.336 16 H 0.059 0.941 17 C -0.100 4.100 18 N -0.972 5.972 19 Si 1.127 2.873 20 H -0.289 1.289 21 H -0.288 1.288 22 H -0.273 1.273 23 C 0.118 3.882 24 C 0.118 3.882 25 N -0.714 5.714 26 C 0.522 3.478 27 O -0.575 6.575 28 C -0.141 4.141 29 H 0.076 0.924 30 H 0.086 0.914 31 H 0.091 0.909 32 H 0.106 0.894 33 H 0.110 0.890 34 H 0.087 0.913 35 H 0.095 0.905 36 H 0.052 0.948 37 H 0.084 0.916 38 H 0.038 0.962 39 H 0.080 0.920 40 H -0.003 1.003 41 H 0.019 0.981 42 H 0.362 0.638 43 H 0.244 0.756 44 H 0.092 0.908 45 H 0.040 0.960 46 H 0.117 0.883 47 H 0.068 0.932 48 H 0.422 0.578 49 H 0.092 0.908 50 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.727 -13.763 1.362 25.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.083 4.083 3 C 0.329 3.671 4 O -0.466 6.466 5 N -0.347 5.347 6 C -0.018 4.018 7 C -0.114 4.114 8 H 0.106 0.894 9 C -0.139 4.139 10 C -0.155 4.155 11 C -0.152 4.152 12 C -0.073 4.073 13 C 0.056 3.944 14 N -0.394 5.394 15 C -0.467 4.467 16 H 0.077 0.923 17 C -0.292 4.292 18 N -0.620 5.620 19 Si 0.952 3.048 20 H -0.216 1.216 21 H -0.214 1.214 22 H -0.198 1.198 23 C -0.004 4.004 24 C -0.007 4.007 25 N -0.369 5.369 26 C 0.309 3.691 27 O -0.455 6.455 28 C -0.181 4.181 29 H 0.095 0.905 30 H 0.104 0.896 31 H 0.110 0.890 32 H 0.124 0.876 33 H 0.128 0.872 34 H 0.106 0.894 35 H 0.113 0.887 36 H 0.071 0.929 37 H 0.102 0.898 38 H 0.057 0.943 39 H 0.099 0.901 40 H 0.015 0.985 41 H 0.037 0.963 42 H 0.195 0.805 43 H 0.054 0.946 44 H 0.110 0.890 45 H 0.059 0.941 46 H 0.135 0.865 47 H 0.087 0.913 48 H 0.263 0.737 49 H 0.110 0.890 50 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -19.762 -13.406 1.022 23.902 hybrid contribution -0.371 -0.537 -0.403 0.767 sum -20.133 -13.943 0.620 24.498 Atomic orbital electron populations 1.22043 0.87764 1.04760 1.05003 1.21573 1.00221 0.89846 0.96623 1.20282 0.79891 0.86802 0.80079 1.90746 1.37859 1.79015 1.38956 1.49576 1.46968 1.11672 1.26484 1.23078 0.93262 1.02535 0.82960 1.22761 0.96390 0.95841 0.96378 0.89446 1.22407 0.96891 0.94155 1.00416 1.22456 0.99100 0.98266 0.95690 1.22440 0.98942 0.94792 0.99014 1.22162 0.93881 0.97430 0.93859 1.20522 0.89818 0.89529 0.94557 1.42517 1.04943 1.33838 1.58060 1.20365 0.86337 1.12974 1.27064 0.92267 1.27140 1.10075 0.94392 0.97587 1.70961 1.10636 1.38793 1.41578 0.82631 0.69929 0.75988 0.76228 1.21645 1.21406 1.19814 1.22930 0.99687 0.82114 0.95684 1.22091 1.02662 0.80045 0.95911 1.46148 1.72759 1.10896 1.07102 1.20926 0.74458 0.90499 0.83180 1.90751 1.52359 1.38606 1.63803 1.22501 1.04682 0.92023 0.98924 0.90519 0.89558 0.89035 0.87557 0.87197 0.89400 0.88701 0.92876 0.89762 0.94329 0.90107 0.98488 0.96340 0.80498 0.94611 0.88993 0.94118 0.86507 0.91328 0.73726 0.88966 0.84335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.30 8.20 71.98 0.59 -0.71 16 2 C -0.08 -1.37 0.60 -51.87 -0.03 -1.40 16 3 C 0.54 14.70 6.62 87.66 0.58 15.28 16 4 O -0.59 -22.48 15.83 -3.02 -0.05 -22.53 16 5 N -0.62 -15.00 3.35 -801.62 -2.69 -17.69 16 6 C 0.10 1.46 4.72 86.52 0.41 1.87 16 7 C -0.09 -1.75 3.52 -9.29 -0.03 -1.78 16 8 H 0.09 1.71 7.88 -2.38 -0.02 1.69 16 9 C -0.10 -1.32 6.38 31.61 0.20 -1.12 16 10 C -0.12 -2.28 6.90 31.85 0.22 -2.06 16 11 C -0.11 -3.07 5.68 31.61 0.18 -2.89 16 12 C -0.07 -2.09 0.61 -50.68 -0.03 -2.12 16 13 C 0.18 7.51 5.20 86.38 0.45 7.96 16 14 N -0.75 -39.11 4.59 -343.45 -1.58 -40.69 16 15 C -0.34 -19.86 9.99 84.03 0.84 -19.02 16 16 H 0.06 3.47 7.83 -2.91 -0.02 3.45 16 17 C -0.10 -6.06 5.50 84.86 0.47 -5.60 16 18 N -0.97 -62.61 13.70 21.65 0.30 -62.31 16 19 Si 1.13 54.35 29.92 68.60 2.05 56.41 16 20 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 21 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 22 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 23 C 0.12 3.65 6.08 86.02 0.52 4.17 16 24 C 0.12 2.02 6.70 86.83 0.58 2.61 16 25 N -0.71 -12.15 6.24 -459.82 -2.87 -15.02 16 26 C 0.52 11.69 8.43 87.90 0.74 12.43 16 27 O -0.58 -17.53 18.03 -3.04 -0.05 -17.59 16 28 C -0.14 -2.59 5.12 30.59 0.16 -2.44 16 29 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.09 0.61 8.14 -2.38 -0.02 0.59 16 31 H 0.09 0.57 5.05 -2.39 -0.01 0.56 16 32 H 0.11 1.00 4.50 -2.38 -0.01 0.99 16 33 H 0.11 0.94 7.15 -2.38 -0.02 0.92 16 34 H 0.09 0.87 8.14 -2.38 -0.02 0.85 16 35 H 0.09 0.81 7.25 -2.39 -0.02 0.79 16 36 H 0.05 1.19 8.14 -2.38 -0.02 1.17 16 37 H 0.08 1.33 8.14 -2.38 -0.02 1.31 16 38 H 0.04 1.37 7.16 -2.39 -0.02 1.35 16 39 H 0.08 1.88 7.19 -2.39 -0.02 1.87 16 40 H 0.00 -0.13 8.14 -2.39 -0.02 -0.14 16 41 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 42 H 0.36 19.45 5.44 -92.71 -0.50 18.95 16 43 H 0.24 15.63 6.77 -92.71 -0.63 15.00 16 44 H 0.09 2.44 7.20 -2.38 -0.02 2.43 16 45 H 0.04 1.74 6.98 -2.39 -0.02 1.72 16 46 H 0.12 1.35 7.91 -2.38 -0.02 1.33 16 47 H 0.07 1.61 6.96 -2.39 -0.02 1.60 16 48 H 0.42 5.59 8.96 -92.70 -0.83 4.76 16 49 H 0.09 2.12 7.89 -2.39 -0.02 2.10 16 50 H 0.14 1.73 6.60 -2.38 -0.02 1.71 16 Total: -1.00 -85.81 378.94 0.74 -85.07 By element: Atomic # 1 Polarization: 29.37 SS G_CDS: -0.21 Total: 29.16 kcal Atomic # 6 Polarization: -0.65 SS G_CDS: 5.84 Total: 5.20 kcal Atomic # 7 Polarization: -128.87 SS G_CDS: -6.84 Total: -135.71 kcal Atomic # 8 Polarization: -40.02 SS G_CDS: -0.10 Total: -40.12 kcal Atomic # 14 Polarization: 54.35 SS G_CDS: 2.05 Total: 56.41 kcal Total: -85.81 0.74 -85.07 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112487651.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.069 kcal (2) G-P(sol) polarization free energy of solvation -85.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds