Wall clock time and date at job start Tue Mar 31 2020 18:56:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50696 * 110.86268 * 2 1 4 4 O 1.21283 * 119.99939 * 121.47943 * 3 2 1 5 5 N 1.34783 * 120.00149 * 301.49070 * 3 2 1 6 6 C 1.48115 * 127.84313 * 354.83694 * 5 3 2 7 7 C 1.54330 * 104.69210 * 219.71748 * 6 5 3 8 8 H 1.09003 * 111.84960 * 213.63030 * 7 6 5 9 9 C 1.54157 * 108.86334 * 89.55740 * 7 6 5 10 10 C 1.54844 * 104.33087 * 271.22377 * 9 7 6 11 11 C 1.54840 * 102.73724 * 321.82245 * 10 9 7 12 12 C 1.54160 * 104.32576 * 38.18620 * 11 10 9 13 13 C 1.53008 * 111.82311 * 213.79060 * 12 11 10 14 14 N 1.46494 * 109.47237 * 299.26022 * 13 12 11 15 15 C 1.36929 * 119.99996 * 179.97438 * 14 13 12 16 16 H 1.08001 * 120.00681 * 0.02562 * 15 14 13 17 17 C 1.38817 * 120.00213 * 180.02562 * 15 14 13 18 18 N 1.31620 * 120.00265 * 180.02562 * 17 15 14 19 19 Si 1.86804 * 119.99737 * 359.97438 * 17 15 14 20 20 H 1.48498 * 109.46989 * 90.00158 * 19 17 15 21 21 H 1.48497 * 109.46954 * 210.00197 * 19 17 15 22 22 H 1.48500 * 109.46983 * 330.00145 * 19 17 15 23 23 C 1.48112 * 127.83922 * 174.79633 * 5 3 2 24 24 C 1.54475 * 111.00137 * 123.82121 * 2 1 3 25 25 N 1.46764 * 105.47645 * 92.71170 * 24 2 1 26 26 C 1.34423 * 111.30169 * 17.01743 * 25 24 2 27 27 O 1.21276 * 124.94081 * 179.63039 * 26 25 24 28 28 C 1.51284 * 110.11399 * 359.59225 * 26 25 24 29 29 H 1.09004 * 109.47114 * 65.72540 * 1 2 3 30 30 H 1.08994 * 109.47382 * 185.72901 * 1 2 3 31 31 H 1.09005 * 109.46636 * 305.73270 * 1 2 3 32 32 H 1.08997 * 110.39109 * 100.90798 * 6 5 3 33 33 H 1.09001 * 110.39127 * 338.51522 * 6 5 3 34 34 H 1.08998 * 110.46355 * 29.94081 * 9 7 6 35 35 H 1.09003 * 110.45855 * 152.51407 * 9 7 6 36 36 H 1.09006 * 110.75328 * 80.13200 * 10 9 7 37 37 H 1.08996 * 110.76079 * 203.32367 * 10 9 7 38 38 H 1.08994 * 110.46550 * 156.89598 * 11 10 9 39 39 H 1.09003 * 110.46000 * 279.35212 * 11 10 9 40 40 H 1.09004 * 109.46823 * 59.26185 * 13 12 11 41 41 H 1.09001 * 109.46775 * 179.25508 * 13 12 11 42 42 H 0.97001 * 119.99773 * 359.97438 * 14 13 12 43 43 H 0.96992 * 119.99809 * 179.97438 * 18 17 15 44 44 H 1.08993 * 110.39900 * 21.48595 * 23 5 3 45 45 H 1.08997 * 110.49084 * 259.14112 * 23 5 3 46 46 H 1.09003 * 110.24533 * 211.71572 * 24 2 1 47 47 H 1.08994 * 110.24767 * 333.71005 * 24 2 1 48 48 H 0.97001 * 124.34523 * 197.03520 * 25 24 2 49 49 H 1.08999 * 110.48444 * 225.07377 * 28 26 25 50 50 H 1.08994 * 110.48829 * 102.42286 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0667 1.4082 0.0000 4 8 2.7952 1.7795 0.8958 5 7 1.7370 2.2551 -0.9953 6 6 0.9549 1.9597 -2.2180 7 6 1.6680 2.7462 -3.3382 8 1 0.9661 3.1097 -4.0888 9 6 2.7585 1.8509 -3.9593 10 6 4.0153 2.1234 -3.0969 11 6 3.9151 3.6433 -2.8182 12 6 2.4087 3.8939 -2.6072 13 6 1.9830 5.2694 -3.1248 14 7 2.7136 6.3117 -2.3995 15 6 2.4963 7.6311 -2.6939 16 1 1.7861 7.9036 -3.4606 17 6 3.1890 8.6188 -2.0071 18 7 2.9798 9.8871 -2.2897 19 14 4.4170 8.1477 -0.6805 20 1 5.7608 7.9759 -1.2885 21 1 4.4715 9.2190 0.3464 22 1 3.9947 6.8738 -0.0450 23 6 2.0737 3.6925 -1.1142 24 6 2.0836 -0.8027 1.1981 25 7 2.2865 -2.1666 0.6955 26 6 2.2962 -2.1954 -0.6484 27 8 2.4523 -3.1927 -1.3206 28 6 2.0833 -0.8030 -1.2002 29 1 -0.3633 0.4225 -0.9368 30 1 -0.3634 -1.0225 0.1026 31 1 -0.3633 0.6002 0.8343 32 1 -0.0722 2.3065 -2.1049 33 1 0.9745 0.8912 -2.4326 34 1 2.4722 0.8012 -3.8946 35 1 2.9391 2.1343 -4.9962 36 1 3.9757 1.5567 -2.1666 37 1 4.9233 1.8886 -3.6522 38 1 4.4742 3.9036 -1.9195 39 1 4.2820 4.2123 -3.6725 40 1 2.2069 5.3423 -4.1891 41 1 0.9122 5.4007 -2.9689 42 1 3.3512 6.0670 -1.7107 43 1 3.4635 10.5772 -1.8095 44 1 2.9381 3.9326 -0.4953 45 1 1.2210 4.3089 -0.8298 46 1 3.0310 -0.3785 1.5309 47 1 1.3629 -0.8053 2.0157 48 1 2.3988 -2.9470 1.2606 49 1 1.3579 -0.8218 -2.0135 50 1 3.0280 -0.3787 -1.5399 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001112487652.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:56:11 Heat of formation + Delta-G solvation = -52.681036 kcal Electronic energy + Delta-G solvation = -31236.643410 eV Core-core repulsion = 27263.738349 eV Total energy + Delta-G solvation = -3972.905061 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.62487 -40.39226 -38.73531 -36.69471 -35.12725 -34.36561 -33.14208 -31.76422 -30.19684 -29.59559 -28.92361 -26.82124 -26.20125 -25.59888 -24.02206 -22.22615 -21.88250 -21.14201 -20.17783 -19.27040 -18.86159 -17.96686 -17.48792 -16.84768 -16.50617 -16.19334 -15.56899 -14.98823 -14.95293 -14.78376 -14.46986 -14.18372 -13.96979 -13.83273 -13.70565 -13.60786 -13.30725 -13.19948 -12.96644 -12.70307 -12.60456 -12.50397 -12.32672 -11.79946 -11.73286 -11.69632 -11.48260 -10.97770 -10.92294 -10.86824 -10.70455 -10.59026 -10.51047 -10.45873 -10.32955 -10.08845 -9.87669 -9.60123 -9.49253 -8.93046 -8.74253 -7.25850 -5.78899 -3.14557 2.18938 2.35332 2.63553 2.99473 3.37167 3.40563 3.45654 3.70337 3.83420 4.12479 4.26865 4.32331 4.43916 4.50974 4.57928 4.60672 4.94843 5.01953 5.03942 5.11358 5.13640 5.16310 5.21453 5.26346 5.32430 5.40965 5.41691 5.45592 5.52827 5.59184 5.62169 5.63817 5.70083 5.78490 5.81077 5.95761 6.02841 6.08691 6.11552 6.31222 6.32937 6.34172 6.44449 6.57127 6.59390 6.63904 7.40286 7.82980 7.92638 7.96588 8.40108 9.18997 9.91457 10.10710 11.39478 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.019124 B = 0.003321 C = 0.003133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.760519 B = 8430.124198 C = 8934.645017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.091 4.091 3 C 0.550 3.450 4 O -0.535 6.535 5 N -0.610 5.610 6 C 0.098 3.902 7 C -0.097 4.097 8 H 0.099 0.901 9 C -0.116 4.116 10 C -0.123 4.123 11 C -0.109 4.109 12 C -0.078 4.078 13 C 0.179 3.821 14 N -0.754 5.754 15 C -0.244 4.244 16 H 0.090 0.910 17 C 0.006 3.994 18 N -0.934 5.934 19 Si 0.880 3.120 20 H -0.284 1.284 21 H -0.291 1.291 22 H -0.276 1.276 23 C 0.118 3.882 24 C 0.118 3.882 25 N -0.729 5.729 26 C 0.524 3.476 27 O -0.533 6.533 28 C -0.147 4.147 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.076 0.924 33 H 0.082 0.918 34 H 0.063 0.937 35 H 0.070 0.930 36 H 0.059 0.941 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.075 0.925 40 H 0.033 0.967 41 H 0.029 0.971 42 H 0.361 0.639 43 H 0.260 0.740 44 H 0.083 0.917 45 H 0.080 0.920 46 H 0.094 0.906 47 H 0.088 0.912 48 H 0.413 0.587 49 H 0.112 0.888 50 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.571 -24.354 2.531 25.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.095 4.095 3 C 0.337 3.663 4 O -0.411 6.411 5 N -0.342 5.342 6 C -0.025 4.025 7 C -0.117 4.117 8 H 0.117 0.883 9 C -0.153 4.153 10 C -0.160 4.160 11 C -0.146 4.146 12 C -0.079 4.079 13 C 0.051 3.949 14 N -0.400 5.400 15 C -0.374 4.374 16 H 0.108 0.892 17 C -0.189 4.189 18 N -0.582 5.582 19 Si 0.711 3.289 20 H -0.210 1.210 21 H -0.217 1.217 22 H -0.203 1.203 23 C -0.004 4.004 24 C -0.006 4.006 25 N -0.385 5.385 26 C 0.310 3.690 27 O -0.409 6.409 28 C -0.187 4.187 29 H 0.092 0.908 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.094 0.906 33 H 0.100 0.900 34 H 0.082 0.918 35 H 0.089 0.911 36 H 0.078 0.922 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.094 0.906 40 H 0.051 0.949 41 H 0.047 0.953 42 H 0.194 0.806 43 H 0.070 0.930 44 H 0.101 0.899 45 H 0.098 0.902 46 H 0.112 0.888 47 H 0.106 0.894 48 H 0.252 0.748 49 H 0.130 0.870 50 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -5.181 -24.432 2.578 25.108 hybrid contribution 0.921 -0.318 1.301 1.625 sum -4.261 -24.750 3.879 25.412 Atomic orbital electron populations 1.21913 0.90662 1.03310 1.03891 1.21619 0.98295 0.92911 0.96698 1.19473 0.80349 0.85508 0.80972 1.90743 1.36743 1.77308 1.36340 1.48816 1.53453 1.11156 1.20819 1.22763 0.95278 1.00398 0.84043 1.22712 0.97468 0.94970 0.96545 0.88303 1.22418 0.94911 0.98492 0.99524 1.22474 0.97557 0.96793 0.99214 1.22385 0.94609 0.95275 1.02335 1.22306 0.95869 0.95855 0.93860 1.20557 0.95056 0.84169 0.95092 1.42683 1.49891 1.02873 1.44514 1.19028 1.20374 0.80668 1.17322 0.89197 1.24652 0.99778 0.95041 0.99474 1.69695 1.45389 0.98599 1.44490 0.86611 0.82230 0.77495 0.82599 1.21040 1.21696 1.20253 1.22501 1.02029 0.79521 0.96329 1.22048 1.02935 0.80491 0.95160 1.46219 1.74160 1.10474 1.07672 1.20713 0.75077 0.90542 0.82664 1.90776 1.50133 1.37211 1.62789 1.22577 1.04613 0.93348 0.98133 0.90773 0.91142 0.91059 0.90627 0.89994 0.91844 0.91120 0.92247 0.91834 0.91824 0.90592 0.94879 0.95316 0.80582 0.93040 0.89865 0.90220 0.88836 0.89376 0.74823 0.86957 0.87128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.84 8.21 37.16 0.31 -0.54 16 2 C -0.09 -0.72 0.60 -154.03 -0.09 -0.82 16 3 C 0.55 6.30 6.56 -10.98 -0.07 6.23 16 4 O -0.53 -8.21 15.77 5.56 0.09 -8.12 16 5 N -0.61 -6.69 2.51 -169.44 -0.43 -7.12 16 6 C 0.10 0.80 4.64 -2.46 -0.01 0.79 16 7 C -0.10 -0.94 3.60 -88.30 -0.32 -1.26 16 8 H 0.10 0.87 7.92 -51.93 -0.41 0.46 16 9 C -0.12 -1.05 6.27 -25.15 -0.16 -1.21 16 10 C -0.12 -1.35 6.51 -24.79 -0.16 -1.51 16 11 C -0.11 -1.49 5.28 -25.16 -0.13 -1.63 16 12 C -0.08 -1.04 0.67 -152.18 -0.10 -1.14 16 13 C 0.18 3.08 5.16 -4.04 -0.02 3.06 16 14 N -0.75 -16.86 5.05 -59.91 -0.30 -17.16 16 15 C -0.24 -6.68 10.47 -15.06 -0.16 -6.84 16 16 H 0.09 2.63 8.06 -52.49 -0.42 2.21 16 17 C 0.01 0.19 5.50 -17.43 -0.10 0.09 16 18 N -0.93 -29.03 13.97 55.49 0.78 -28.26 16 19 Si 0.88 22.02 27.74 -169.99 -4.71 17.31 16 20 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 21 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 22 H -0.28 -6.54 6.52 56.52 0.37 -6.17 16 23 C 0.12 1.65 5.65 -2.46 -0.01 1.64 16 24 C 0.12 0.88 6.68 -3.12 -0.02 0.86 16 25 N -0.73 -5.44 6.24 -59.20 -0.37 -5.81 16 26 C 0.52 5.20 8.43 -10.86 -0.09 5.10 16 27 O -0.53 -7.37 18.03 5.56 0.10 -7.27 16 28 C -0.15 -1.16 4.81 -26.73 -0.13 -1.28 16 29 H 0.07 0.39 5.80 -51.93 -0.30 0.09 16 30 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.08 0.55 8.03 -51.93 -0.42 0.13 16 33 H 0.08 0.51 3.82 -51.93 -0.20 0.31 16 34 H 0.06 0.48 7.45 -51.93 -0.39 0.09 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.06 0.68 7.08 -51.93 -0.37 0.32 16 37 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.06 0.97 7.45 -51.93 -0.39 0.59 16 39 H 0.08 1.12 7.96 -51.93 -0.41 0.71 16 40 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.36 8.06 4.96 -40.82 -0.20 7.85 16 43 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 44 H 0.08 1.37 7.14 -51.93 -0.37 1.00 16 45 H 0.08 1.18 7.98 -51.93 -0.41 0.76 16 46 H 0.09 0.85 7.00 -51.93 -0.36 0.49 16 47 H 0.09 0.51 7.91 -51.93 -0.41 0.09 16 48 H 0.41 2.39 8.96 -40.82 -0.37 2.02 16 49 H 0.11 0.71 6.42 -51.93 -0.33 0.38 16 50 H 0.11 0.94 7.30 -51.93 -0.38 0.56 16 LS Contribution 377.47 15.07 5.69 5.69 Total: -1.00 -34.65 377.47 -8.28 -42.93 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: -7.85 Total: 6.26 kcal Atomic # 6 Polarization: 2.83 SS G_CDS: -1.27 Total: 1.55 kcal Atomic # 7 Polarization: -58.02 SS G_CDS: -0.32 Total: -58.35 kcal Atomic # 8 Polarization: -15.58 SS G_CDS: 0.19 Total: -15.39 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -4.71 Total: 17.31 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -34.65 -8.28 -42.93 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112487652.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.750 kcal (2) G-P(sol) polarization free energy of solvation -34.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds