Wall clock time and date at job start Tue Mar 31 2020 18:56:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50696 * 110.86268 * 2 1 4 4 O 1.21283 * 119.99939 * 121.47943 * 3 2 1 5 5 N 1.34783 * 120.00149 * 301.49070 * 3 2 1 6 6 C 1.48115 * 127.84313 * 354.83694 * 5 3 2 7 7 C 1.54330 * 104.69210 * 219.71748 * 6 5 3 8 8 H 1.09003 * 111.84960 * 213.63030 * 7 6 5 9 9 C 1.54157 * 108.86334 * 89.55740 * 7 6 5 10 10 C 1.54844 * 104.33087 * 271.22377 * 9 7 6 11 11 C 1.54840 * 102.73724 * 321.82245 * 10 9 7 12 12 C 1.54160 * 104.32576 * 38.18620 * 11 10 9 13 13 C 1.53008 * 111.82311 * 213.79060 * 12 11 10 14 14 N 1.46494 * 109.47237 * 299.26022 * 13 12 11 15 15 C 1.36929 * 119.99996 * 179.97438 * 14 13 12 16 16 H 1.08001 * 120.00681 * 0.02562 * 15 14 13 17 17 C 1.38817 * 120.00213 * 180.02562 * 15 14 13 18 18 N 1.31620 * 120.00265 * 180.02562 * 17 15 14 19 19 Si 1.86804 * 119.99737 * 359.97438 * 17 15 14 20 20 H 1.48498 * 109.46989 * 90.00158 * 19 17 15 21 21 H 1.48497 * 109.46954 * 210.00197 * 19 17 15 22 22 H 1.48500 * 109.46983 * 330.00145 * 19 17 15 23 23 C 1.48112 * 127.83922 * 174.79633 * 5 3 2 24 24 C 1.54475 * 111.00137 * 123.82121 * 2 1 3 25 25 N 1.46764 * 105.47645 * 92.71170 * 24 2 1 26 26 C 1.34423 * 111.30169 * 17.01743 * 25 24 2 27 27 O 1.21276 * 124.94081 * 179.63039 * 26 25 24 28 28 C 1.51284 * 110.11399 * 359.59225 * 26 25 24 29 29 H 1.09004 * 109.47114 * 65.72540 * 1 2 3 30 30 H 1.08994 * 109.47382 * 185.72901 * 1 2 3 31 31 H 1.09005 * 109.46636 * 305.73270 * 1 2 3 32 32 H 1.08997 * 110.39109 * 100.90798 * 6 5 3 33 33 H 1.09001 * 110.39127 * 338.51522 * 6 5 3 34 34 H 1.08998 * 110.46355 * 29.94081 * 9 7 6 35 35 H 1.09003 * 110.45855 * 152.51407 * 9 7 6 36 36 H 1.09006 * 110.75328 * 80.13200 * 10 9 7 37 37 H 1.08996 * 110.76079 * 203.32367 * 10 9 7 38 38 H 1.08994 * 110.46550 * 156.89598 * 11 10 9 39 39 H 1.09003 * 110.46000 * 279.35212 * 11 10 9 40 40 H 1.09004 * 109.46823 * 59.26185 * 13 12 11 41 41 H 1.09001 * 109.46775 * 179.25508 * 13 12 11 42 42 H 0.97001 * 119.99773 * 359.97438 * 14 13 12 43 43 H 0.96992 * 119.99809 * 179.97438 * 18 17 15 44 44 H 1.08993 * 110.39900 * 21.48595 * 23 5 3 45 45 H 1.08997 * 110.49084 * 259.14112 * 23 5 3 46 46 H 1.09003 * 110.24533 * 211.71572 * 24 2 1 47 47 H 1.08994 * 110.24767 * 333.71005 * 24 2 1 48 48 H 0.97001 * 124.34523 * 197.03520 * 25 24 2 49 49 H 1.08999 * 110.48444 * 225.07377 * 28 26 25 50 50 H 1.08994 * 110.48829 * 102.42286 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0667 1.4082 0.0000 4 8 2.7952 1.7795 0.8958 5 7 1.7370 2.2551 -0.9953 6 6 0.9549 1.9597 -2.2180 7 6 1.6680 2.7462 -3.3382 8 1 0.9661 3.1097 -4.0888 9 6 2.7585 1.8509 -3.9593 10 6 4.0153 2.1234 -3.0969 11 6 3.9151 3.6433 -2.8182 12 6 2.4087 3.8939 -2.6072 13 6 1.9830 5.2694 -3.1248 14 7 2.7136 6.3117 -2.3995 15 6 2.4963 7.6311 -2.6939 16 1 1.7861 7.9036 -3.4606 17 6 3.1890 8.6188 -2.0071 18 7 2.9798 9.8871 -2.2897 19 14 4.4170 8.1477 -0.6805 20 1 5.7608 7.9759 -1.2885 21 1 4.4715 9.2190 0.3464 22 1 3.9947 6.8738 -0.0450 23 6 2.0737 3.6925 -1.1142 24 6 2.0836 -0.8027 1.1981 25 7 2.2865 -2.1666 0.6955 26 6 2.2962 -2.1954 -0.6484 27 8 2.4523 -3.1927 -1.3206 28 6 2.0833 -0.8030 -1.2002 29 1 -0.3633 0.4225 -0.9368 30 1 -0.3634 -1.0225 0.1026 31 1 -0.3633 0.6002 0.8343 32 1 -0.0722 2.3065 -2.1049 33 1 0.9745 0.8912 -2.4326 34 1 2.4722 0.8012 -3.8946 35 1 2.9391 2.1343 -4.9962 36 1 3.9757 1.5567 -2.1666 37 1 4.9233 1.8886 -3.6522 38 1 4.4742 3.9036 -1.9195 39 1 4.2820 4.2123 -3.6725 40 1 2.2069 5.3423 -4.1891 41 1 0.9122 5.4007 -2.9689 42 1 3.3512 6.0670 -1.7107 43 1 3.4635 10.5772 -1.8095 44 1 2.9381 3.9326 -0.4953 45 1 1.2210 4.3089 -0.8298 46 1 3.0310 -0.3785 1.5309 47 1 1.3629 -0.8053 2.0157 48 1 2.3988 -2.9470 1.2606 49 1 1.3579 -0.8218 -2.0135 50 1 3.0280 -0.3787 -1.5399 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001112487652.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:56:09 Heat of formation + Delta-G solvation = -78.008886 kcal Electronic energy + Delta-G solvation = -31237.741708 eV Core-core repulsion = 27263.738349 eV Total energy + Delta-G solvation = -3974.003359 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.43326 -41.25661 -39.67820 -37.51793 -36.67460 -35.49666 -33.92116 -33.55624 -31.34067 -30.78715 -29.53749 -27.55131 -27.39178 -26.48976 -25.36085 -23.65128 -22.89026 -21.83651 -21.08902 -20.26196 -20.11234 -19.28017 -18.53997 -17.62688 -17.47748 -17.09616 -16.55071 -16.35352 -15.90845 -15.77488 -15.66464 -15.33640 -14.99517 -14.93788 -14.75145 -14.53336 -14.37734 -14.24569 -14.06476 -13.75654 -13.62499 -13.38529 -13.21969 -13.15625 -12.98828 -12.71792 -12.36801 -12.24535 -12.19240 -11.90261 -11.82792 -11.74953 -11.64425 -11.57295 -11.48213 -11.46365 -11.23400 -10.97645 -10.75871 -10.18243 -9.68255 -9.27035 -8.03227 -5.34334 1.35581 1.35778 1.42834 1.43342 1.50253 1.77951 2.35111 2.45722 3.01598 3.15845 3.28962 3.30020 3.48812 3.58669 3.61190 3.71798 3.87530 3.93611 4.15554 4.19783 4.26688 4.36725 4.41151 4.47712 4.50460 4.56023 4.63060 4.69682 4.71798 4.74052 4.76173 4.83643 4.85906 4.95292 4.96281 5.05175 5.06787 5.13819 5.21814 5.23982 5.33572 5.33795 5.45867 5.47221 5.70261 5.77685 5.93322 6.21763 6.54376 7.02700 7.08727 7.15556 7.86556 8.02965 9.18608 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.019124 B = 0.003321 C = 0.003133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.760519 B = 8430.124198 C = 8934.645017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.080 4.080 3 C 0.548 3.452 4 O -0.581 6.581 5 N -0.605 5.605 6 C 0.097 3.903 7 C -0.091 4.091 8 H 0.116 0.884 9 C -0.109 4.109 10 C -0.117 4.117 11 C -0.113 4.113 12 C -0.072 4.072 13 C 0.176 3.824 14 N -0.757 5.757 15 C -0.224 4.224 16 H 0.064 0.936 17 C -0.059 4.059 18 N -0.983 5.983 19 Si 0.942 3.058 20 H -0.280 1.280 21 H -0.296 1.296 22 H -0.260 1.260 23 C 0.121 3.879 24 C 0.119 3.881 25 N -0.717 5.717 26 C 0.522 3.478 27 O -0.575 6.575 28 C -0.141 4.141 29 H 0.088 0.912 30 H 0.084 0.916 31 H 0.069 0.931 32 H 0.096 0.904 33 H 0.112 0.888 34 H 0.091 0.909 35 H 0.076 0.924 36 H 0.054 0.946 37 H 0.069 0.931 38 H 0.038 0.962 39 H 0.062 0.938 40 H 0.034 0.966 41 H 0.035 0.965 42 H 0.362 0.638 43 H 0.257 0.743 44 H 0.050 0.950 45 H 0.070 0.930 46 H 0.075 0.925 47 H 0.110 0.890 48 H 0.421 0.579 49 H 0.137 0.863 50 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.954 -27.545 2.210 28.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.084 4.084 3 C 0.337 3.663 4 O -0.460 6.460 5 N -0.336 5.336 6 C -0.024 4.024 7 C -0.110 4.110 8 H 0.135 0.865 9 C -0.147 4.147 10 C -0.155 4.155 11 C -0.150 4.150 12 C -0.074 4.074 13 C 0.050 3.950 14 N -0.402 5.402 15 C -0.355 4.355 16 H 0.082 0.918 17 C -0.251 4.251 18 N -0.634 5.634 19 Si 0.771 3.229 20 H -0.207 1.207 21 H -0.223 1.223 22 H -0.185 1.185 23 C -0.003 4.003 24 C -0.006 4.006 25 N -0.372 5.372 26 C 0.309 3.691 27 O -0.455 6.455 28 C -0.181 4.181 29 H 0.106 0.894 30 H 0.103 0.897 31 H 0.088 0.912 32 H 0.114 0.886 33 H 0.130 0.870 34 H 0.109 0.891 35 H 0.095 0.905 36 H 0.073 0.927 37 H 0.087 0.913 38 H 0.057 0.943 39 H 0.081 0.919 40 H 0.052 0.948 41 H 0.053 0.947 42 H 0.195 0.805 43 H 0.066 0.934 44 H 0.069 0.931 45 H 0.088 0.912 46 H 0.094 0.906 47 H 0.128 0.872 48 H 0.261 0.739 49 H 0.155 0.845 50 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -6.593 -27.685 2.256 28.549 hybrid contribution 1.329 0.697 1.377 2.037 sum -5.264 -26.988 3.633 27.736 Atomic orbital electron populations 1.21957 0.88530 1.04361 1.04686 1.21558 0.99669 0.90210 0.96960 1.20101 0.79472 0.86632 0.80136 1.90728 1.38776 1.78400 1.38144 1.48818 1.53416 1.09661 1.21738 1.23030 0.95505 1.02046 0.81833 1.22746 0.97736 0.93428 0.97113 0.86549 1.22434 0.93163 0.99911 0.99154 1.22424 0.99261 0.94171 0.99602 1.22367 0.94557 0.97546 1.00561 1.22151 0.96164 0.95002 0.94040 1.20748 0.94688 0.84967 0.94618 1.42747 1.50379 1.02172 1.44945 1.19062 1.18262 0.82838 1.15339 0.91812 1.25352 1.02399 0.95004 1.02342 1.69852 1.47353 0.99786 1.46411 0.85598 0.79955 0.77519 0.79863 1.20676 1.22269 1.18527 1.22234 1.00291 0.81669 0.96062 1.22068 1.02715 0.80070 0.95733 1.46195 1.72849 1.10872 1.07247 1.20986 0.74416 0.90665 0.83072 1.90760 1.52345 1.38698 1.63745 1.22599 1.05152 0.91778 0.98609 0.89354 0.89744 0.91194 0.88608 0.87047 0.89074 0.90544 0.92707 0.91267 0.94285 0.91950 0.94784 0.94742 0.80512 0.93428 0.93093 0.91179 0.90646 0.87205 0.73877 0.84478 0.87522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.08 8.21 71.98 0.59 -0.49 16 2 C -0.08 -1.03 0.60 -51.87 -0.03 -1.06 16 3 C 0.55 11.58 6.56 87.65 0.57 12.16 16 4 O -0.58 -17.73 15.77 -3.04 -0.05 -17.78 16 5 N -0.60 -11.93 2.51 -808.36 -2.03 -13.96 16 6 C 0.10 1.17 4.64 86.52 0.40 1.57 16 7 C -0.09 -1.42 3.60 -9.29 -0.03 -1.46 16 8 H 0.12 1.53 7.92 -2.39 -0.02 1.51 16 9 C -0.11 -1.54 6.27 31.62 0.20 -1.34 16 10 C -0.12 -2.33 6.51 31.85 0.21 -2.13 16 11 C -0.11 -3.05 5.28 31.62 0.17 -2.88 16 12 C -0.07 -1.83 0.67 -50.67 -0.03 -1.87 16 13 C 0.18 5.93 5.16 86.38 0.45 6.38 16 14 N -0.76 -34.01 5.05 -343.44 -1.73 -35.74 16 15 C -0.22 -12.48 10.47 84.04 0.88 -11.60 16 16 H 0.06 3.84 8.06 -2.91 -0.02 3.82 16 17 C -0.06 -3.50 5.50 84.86 0.47 -3.03 16 18 N -0.98 -62.92 13.97 21.65 0.30 -62.61 16 19 Si 0.94 46.52 27.74 68.60 1.90 48.42 16 20 H -0.28 -13.58 7.11 99.48 0.71 -12.88 16 21 H -0.30 -14.80 7.11 99.48 0.71 -14.09 16 22 H -0.26 -11.96 6.52 99.48 0.65 -11.31 16 23 C 0.12 3.30 5.65 86.52 0.49 3.78 16 24 C 0.12 1.51 6.68 86.83 0.58 2.09 16 25 N -0.72 -9.08 6.24 -459.81 -2.87 -11.95 16 26 C 0.52 9.06 8.43 87.90 0.74 9.80 16 27 O -0.58 -14.89 18.03 -3.02 -0.05 -14.95 16 28 C -0.14 -1.74 4.81 30.59 0.15 -1.59 16 29 H 0.09 0.46 5.80 -2.39 -0.01 0.45 16 30 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.07 0.62 8.14 -2.38 -0.02 0.60 16 32 H 0.10 0.88 8.03 -2.39 -0.02 0.86 16 33 H 0.11 0.73 3.82 -2.39 -0.01 0.72 16 34 H 0.09 0.85 7.45 -2.39 -0.02 0.83 16 35 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.05 1.16 7.08 -2.38 -0.02 1.14 16 37 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.04 1.22 7.45 -2.39 -0.02 1.20 16 39 H 0.06 1.83 7.96 -2.39 -0.02 1.81 16 40 H 0.03 1.17 8.14 -2.38 -0.02 1.15 16 41 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 42 H 0.36 16.21 4.96 -92.71 -0.46 15.75 16 43 H 0.26 15.74 8.31 -92.71 -0.77 14.97 16 44 H 0.05 1.72 7.14 -2.39 -0.02 1.70 16 45 H 0.07 2.03 7.98 -2.39 -0.02 2.01 16 46 H 0.08 1.30 7.00 -2.39 -0.02 1.28 16 47 H 0.11 0.95 7.91 -2.39 -0.02 0.93 16 48 H 0.42 4.01 8.96 -92.71 -0.83 3.18 16 49 H 0.14 1.00 6.42 -2.39 -0.02 0.99 16 50 H 0.11 1.48 7.30 -2.39 -0.02 1.46 16 Total: -1.00 -79.09 377.47 0.89 -78.20 By element: Atomic # 1 Polarization: 22.41 SS G_CDS: -0.38 Total: 22.03 kcal Atomic # 6 Polarization: 2.54 SS G_CDS: 5.79 Total: 8.34 kcal Atomic # 7 Polarization: -117.93 SS G_CDS: -6.33 Total: -124.26 kcal Atomic # 8 Polarization: -32.62 SS G_CDS: -0.10 Total: -32.73 kcal Atomic # 14 Polarization: 46.52 SS G_CDS: 1.90 Total: 48.42 kcal Total: -79.09 0.89 -78.20 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112487652.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.195 kcal (2) G-P(sol) polarization free energy of solvation -79.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds