Wall clock time and date at job start Tue Mar 31 2020 19:07:34
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50694 * 1
3 3 C 1.34332 * 126.44371 * 2 1
4 4 N 1.34481 * 107.66529 * 179.72234 * 3 2 1
5 5 C 1.30248 * 108.70560 * 0.42028 * 4 3 2
6 6 C 1.50692 * 125.62315 * 179.83722 * 5 4 3
7 7 C 1.53003 * 109.47445 * 89.69155 * 6 5 4
8 8 C 1.52996 * 109.47495 * 180.02562 * 7 6 5
9 9 C 1.50699 * 109.47096 * 180.02562 * 8 7 6
10 10 O 1.21282 * 119.99863 * 0.02562 * 9 8 7
11 11 N 1.34771 * 120.00095 * 179.97438 * 9 8 7
12 12 C 1.46503 * 120.00183 * 179.72537 * 11 9 8
13 13 H 1.08998 * 109.49846 * 325.27925 * 12 11 9
14 14 C 1.53044 * 109.49684 * 205.21395 * 12 11 9
15 15 C 1.53039 * 109.53775 * 178.71771 * 14 12 11
16 16 C 1.53190 * 109.34133 * 61.31457 * 15 14 12
17 17 H 1.08997 * 109.58478 * 65.16973 * 16 15 14
18 18 C 1.52996 * 109.70389 * 185.52633 * 16 15 14
19 19 N 1.46929 * 108.77589 * 305.38376 * 16 15 14
20 20 C 1.36936 * 120.62809 * 233.58107 * 19 16 15
21 21 H 1.08001 * 120.00012 * 29.05091 * 20 19 16
22 22 C 1.38809 * 119.99840 * 209.03758 * 20 19 16
23 23 N 1.31619 * 120.00258 * 15.02013 * 22 20 19
24 24 Si 1.86805 * 119.99930 * 195.01519 * 22 20 19
25 25 H 1.48497 * 109.47362 * 90.00688 * 24 22 20
26 26 H 1.48510 * 109.46944 * 210.00312 * 24 22 20
27 27 H 1.48499 * 109.47135 * 330.00264 * 24 22 20
28 28 C 1.46926 * 118.73902 * 53.60391 * 19 16 15
29 29 O 1.33974 * 108.76010 * 359.57446 * 5 4 3
30 30 H 1.09002 * 109.47384 * 270.02904 * 1 2 3
31 31 H 1.08999 * 109.47256 * 30.02628 * 1 2 3
32 32 H 1.08996 * 109.47358 * 150.02738 * 1 2 3
33 33 H 1.08001 * 126.16515 * 359.97438 * 3 2 1
34 34 H 1.09008 * 109.47030 * 329.69456 * 6 5 4
35 35 H 1.08999 * 109.47470 * 209.69546 * 6 5 4
36 36 H 1.09008 * 109.46254 * 59.99991 * 7 6 5
37 37 H 1.08999 * 109.47106 * 300.00614 * 7 6 5
38 38 H 1.09004 * 109.46711 * 60.00601 * 8 7 6
39 39 H 1.08999 * 109.47408 * 300.00383 * 8 7 6
40 40 H 0.97001 * 120.00174 * 0.02562 * 11 9 8
41 41 H 1.09001 * 109.46038 * 298.70643 * 14 12 11
42 42 H 1.08997 * 109.45749 * 58.66486 * 14 12 11
43 43 H 1.09003 * 109.46707 * 301.36331 * 15 14 12
44 44 H 1.08996 * 109.52624 * 181.30148 * 15 14 12
45 45 H 1.09002 * 109.46872 * 179.36605 * 18 16 15
46 46 H 1.09000 * 109.47327 * 299.35866 * 18 16 15
47 47 H 1.08999 * 109.47369 * 59.36489 * 18 16 15
48 48 H 0.97002 * 120.00251 * 179.97438 * 23 22 20
49 49 H 1.09001 * 109.58744 * 186.60246 * 28 19 16
50 50 H 1.09001 * 109.70045 * 66.25087 * 28 19 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5069 0.0000 0.0000
3 6 2.3049 1.0806 0.0000
4 7 3.5781 0.6477 0.0062
5 6 3.5765 -0.6547 0.0009
6 6 4.8003 -1.5340 0.0015
7 6 5.2142 -1.8312 1.4442
8 6 6.4571 -2.7233 1.4448
9 6 6.8643 -3.0165 2.8659
10 8 6.2232 -2.5574 3.7873
11 7 7.9403 -3.7896 3.1127
12 6 8.3397 -4.0697 4.4941
13 1 8.1351 -3.1981 5.1158
14 6 9.8357 -4.3890 4.5385
15 6 10.2606 -4.6505 5.9853
16 6 9.4913 -5.8582 6.5297
17 1 9.7812 -6.7539 5.9803
18 6 9.8061 -6.0434 8.0154
19 7 8.0519 -5.6189 6.3572
20 6 7.1957 -5.7189 7.4212
21 1 7.5485 -5.5080 8.4200
22 6 5.8743 -6.0912 7.2161
23 7 5.5123 -6.6291 6.0707
24 14 4.6097 -5.8288 8.5658
25 1 3.9948 -4.4857 8.4137
26 1 3.5555 -6.8701 8.4655
27 1 5.2734 -5.9223 9.8909
28 6 7.5487 -5.2708 5.0215
29 8 2.3074 -1.0840 0.0006
30 1 -0.3634 0.0005 1.0277
31 1 -0.3634 0.8897 -0.5142
32 1 -0.3634 -0.8902 -0.5134
33 1 1.9821 2.1113 -0.0004
34 1 5.6149 -1.0233 -0.5122
35 1 4.5764 -2.4689 -0.5121
36 1 4.3996 -2.3419 1.9579
37 1 5.4382 -0.8962 1.9579
38 1 7.2715 -2.2122 0.9313
39 1 6.2336 -3.6583 0.9311
40 1 8.4528 -4.1571 2.3757
41 1 10.0360 -5.2751 3.9360
42 1 10.3992 -3.5449 4.1410
43 1 10.0384 -3.7734 6.5933
44 1 11.3306 -4.8552 6.0195
45 1 9.2483 -6.8966 8.4013
46 1 10.8742 -6.2208 8.1411
47 1 9.5201 -5.1449 8.5622
48 1 4.5890 -6.8896 5.9274
49 1 6.4915 -5.0128 5.0851
50 1 7.6781 -6.1179 4.3478
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001132087693.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 19:07:34
Heat of formation + Delta-G solvation = -40.055261 kcal
Electronic energy + Delta-G solvation = -28941.719414 eV
Core-core repulsion = 24969.361848 eV
Total energy + Delta-G solvation = -3972.357566 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 335.200 amu
Computer time = 1.51 seconds
Orbital eigenvalues (eV)
-44.34485 -40.92911 -39.27250 -36.37760 -35.89979 -35.59252 -34.65064 -33.32594
-32.26560 -31.72719 -30.02269 -27.77413 -27.03457 -26.30477 -24.18005 -23.77557
-23.04501 -22.11982 -21.79425 -21.32348 -20.75222 -18.35439 -18.29879 -17.80953
-17.59800 -17.27715 -16.79246 -16.61675 -15.84206 -15.62834 -15.46031 -15.28547
-15.08031 -14.94158 -14.53988 -14.40559 -14.23207 -14.08145 -13.95711 -13.58375
-13.27229 -13.21075 -13.04820 -12.91702 -12.74846 -12.70638 -12.56849 -12.54386
-12.32421 -12.27721 -12.10182 -11.96533 -11.77190 -11.65021 -11.57978 -11.39811
-11.13265 -10.73710 -10.54789 -9.99729 -9.63649 -8.62407 -7.85744 -5.31588
0.40748 1.38122 1.43530 1.48695 1.62087 1.71089 1.78838 2.32247
2.50117 3.09883 3.30370 3.64635 3.79883 3.82879 3.97915 4.00549
4.01410 4.09596 4.11305 4.26775 4.31547 4.39091 4.41724 4.60629
4.61428 4.64095 4.65651 4.69346 4.72191 4.78307 4.84574 4.90699
5.01012 5.03373 5.08007 5.09062 5.17276 5.19773 5.24995 5.32667
5.35173 5.37849 5.54122 5.56340 5.62634 5.69883 5.84211 6.41160
6.70640 6.74163 7.15879 7.47107 7.90469 8.38808 9.18896
Molecular weight = 335.20amu
Principal moments of inertia in cm(-1)
A = 0.012477 B = 0.002572 C = 0.002216
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2243.504140 B =10883.432788 C =12629.637935
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.067 4.067
2 C -0.058 4.058
3 C -0.065 4.065
4 N -0.510 5.510
5 C 0.179 3.821
6 C -0.014 4.014
7 C -0.095 4.095
8 C -0.122 4.122
9 C 0.496 3.504
10 O -0.599 6.599
11 N -0.709 5.709
12 C 0.130 3.870
13 H 0.044 0.956
14 C -0.106 4.106
15 C -0.119 4.119
16 C 0.153 3.847
17 H 0.023 0.977
18 C -0.130 4.130
19 N -0.604 5.604
20 C -0.249 4.249
21 H 0.074 0.926
22 C -0.055 4.055
23 N -0.932 5.932
24 Si 0.954 3.046
25 H -0.299 1.299
26 H -0.293 1.293
27 H -0.261 1.261
28 C 0.179 3.821
29 O -0.219 6.219
30 H 0.090 0.910
31 H 0.118 0.882
32 H 0.084 0.916
33 H 0.206 0.794
34 H 0.132 0.868
35 H 0.120 0.880
36 H 0.042 0.958
37 H 0.052 0.948
38 H 0.138 0.862
39 H 0.125 0.875
40 H 0.416 0.584
41 H 0.075 0.925
42 H 0.085 0.915
43 H 0.049 0.951
44 H 0.096 0.904
45 H 0.037 0.963
46 H 0.079 0.921
47 H 0.044 0.956
48 H 0.244 0.756
49 H 0.041 0.959
50 H -0.001 1.001
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.966 10.272 -17.376 20.281
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.123 4.123
2 C -0.111 4.111
3 C -0.202 4.202
4 N -0.240 5.240
5 C -0.028 4.028
6 C -0.052 4.052
7 C -0.134 4.134
8 C -0.161 4.161
9 C 0.285 3.715
10 O -0.479 6.479
11 N -0.361 5.361
12 C 0.023 3.977
13 H 0.062 0.938
14 C -0.144 4.144
15 C -0.158 4.158
16 C 0.048 3.952
17 H 0.041 0.959
18 C -0.187 4.187
19 N -0.329 5.329
20 C -0.379 4.379
21 H 0.091 0.909
22 C -0.250 4.250
23 N -0.579 5.579
24 Si 0.784 3.216
25 H -0.227 1.227
26 H -0.219 1.219
27 H -0.185 1.185
28 C 0.052 3.948
29 O -0.106 6.106
30 H 0.109 0.891
31 H 0.137 0.863
32 H 0.103 0.897
33 H 0.223 0.777
34 H 0.150 0.850
35 H 0.138 0.862
36 H 0.060 0.940
37 H 0.071 0.929
38 H 0.156 0.844
39 H 0.143 0.857
40 H 0.253 0.747
41 H 0.093 0.907
42 H 0.104 0.896
43 H 0.067 0.933
44 H 0.114 0.886
45 H 0.057 0.943
46 H 0.098 0.902
47 H 0.063 0.937
48 H 0.053 0.947
49 H 0.059 0.941
50 H 0.017 0.983
Dipole moment (debyes) X Y Z Total
from point charges 1.921 10.835 -16.734 20.028
hybrid contribution -1.803 -0.529 0.762 2.028
sum 0.118 10.306 -15.972 19.009
Atomic orbital electron populations
1.20487 0.81178 1.05904 1.04762 1.24305 0.96760 0.84044 1.05989
1.23568 0.87419 1.01761 1.07490 1.70403 1.24407 1.09991 1.19168
1.26884 0.85031 0.90630 1.00221 1.20279 0.88623 0.98424 0.97838
1.21178 0.97318 0.99695 0.95233 1.21643 0.99704 1.03384 0.91403
1.21606 0.79615 0.77312 0.92985 1.90736 1.54278 1.53938 1.48959
1.45908 1.30246 1.51350 1.08622 1.21452 0.96221 0.97634 0.82413
0.93798 1.21634 0.92376 1.02440 0.97955 1.21953 1.00347 0.98199
0.95339 1.20808 0.83467 0.95165 0.95760 0.95910 1.21736 1.00771
1.00812 0.95401 1.44340 1.02888 1.80015 1.05618 1.19481 0.91532
1.37641 0.89273 0.90877 1.25774 1.00758 0.99391 0.99041 1.70150
1.16415 1.45284 1.26068 0.85444 0.79497 0.76453 0.80241 1.22682
1.21901 1.18526 1.20778 0.97093 0.91863 0.85045 1.84410 1.18488
1.37686 1.70064 0.89125 0.86324 0.89712 0.77681 0.84980 0.86161
0.93955 0.92880 0.84377 0.85661 0.74693 0.90650 0.89616 0.93255
0.88588 0.94350 0.90208 0.93721 0.94715 0.94069 0.98290
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.07 -0.78 10.43 71.23 0.74 -0.03 16
2 C -0.06 -1.24 7.39 24.79 0.18 -1.06 16
3 C -0.06 -1.45 11.80 83.39 0.98 -0.47 16
4 N -0.51 -13.94 11.29 -303.83 -3.43 -17.37 16
5 C 0.18 4.51 7.60 88.34 0.67 5.18 16
6 C -0.01 -0.25 5.84 29.85 0.17 -0.07 16
7 C -0.10 -2.33 4.49 30.59 0.14 -2.19 16
8 C -0.12 -2.42 5.70 29.85 0.17 -2.25 16
9 C 0.50 16.67 7.80 87.66 0.68 17.35 16
10 O -0.60 -28.19 15.64 -3.04 -0.05 -28.24 16
11 N -0.71 -21.56 5.08 -442.17 -2.25 -23.81 16
12 C 0.13 5.03 2.60 45.07 0.12 5.14 16
13 H 0.04 2.04 7.57 -2.39 -0.02 2.02 16
14 C -0.11 -3.08 5.36 30.62 0.16 -2.92 16
15 C -0.12 -3.71 5.38 30.67 0.16 -3.55 16
16 C 0.15 6.12 3.49 44.97 0.16 6.28 16
17 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16
18 C -0.13 -4.72 7.95 71.98 0.57 -4.15 16
19 N -0.60 -30.98 2.99 -675.25 -2.02 -33.00 16
20 C -0.25 -14.17 8.60 84.03 0.72 -13.45 16
21 H 0.07 4.03 6.21 -2.91 -0.02 4.01 16
22 C -0.05 -3.25 4.96 84.86 0.42 -2.83 16
23 N -0.93 -58.48 11.14 21.65 0.24 -58.24 16
24 Si 0.95 48.44 29.58 68.60 2.03 50.46 16
25 H -0.30 -15.61 7.11 99.48 0.71 -14.91 16
26 H -0.29 -14.73 7.11 99.48 0.71 -14.02 16
27 H -0.26 -12.31 7.11 99.48 0.71 -11.61 16
28 C 0.18 9.04 4.87 86.36 0.42 9.46 16
29 O -0.22 -5.72 10.78 -3.83 -0.04 -5.76 16
30 H 0.09 0.97 8.14 -2.39 -0.02 0.96 16
31 H 0.12 0.71 8.14 -2.39 -0.02 0.69 16
32 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16
33 H 0.21 3.18 8.06 -2.91 -0.02 3.16 16
34 H 0.13 1.65 8.14 -2.38 -0.02 1.63 16
35 H 0.12 1.50 8.14 -2.39 -0.02 1.48 16
36 H 0.04 1.31 8.10 -2.38 -0.02 1.29 16
37 H 0.05 1.56 8.10 -2.39 -0.02 1.54 16
38 H 0.14 1.58 8.14 -2.39 -0.02 1.56 16
39 H 0.13 1.82 8.14 -2.39 -0.02 1.80 16
40 H 0.42 8.59 8.60 -92.71 -0.80 7.79 16
41 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16
42 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16
43 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16
44 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16
45 H 0.04 1.54 7.62 -2.39 -0.02 1.53 16
46 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16
47 H 0.04 1.68 7.44 -2.39 -0.02 1.66 16
48 H 0.24 15.01 8.31 -92.71 -0.77 14.24 16
49 H 0.04 2.52 6.06 -2.39 -0.01 2.50 16
50 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16
Total: -1.00 -87.57 402.14 1.10 -86.47
By element:
Atomic # 1 Polarization: 18.91 SS G_CDS: 0.13 Total: 19.05 kcal
Atomic # 6 Polarization: 3.96 SS G_CDS: 6.49 Total: 10.44 kcal
Atomic # 7 Polarization: -124.97 SS G_CDS: -7.46 Total: -132.42 kcal
Atomic # 8 Polarization: -33.91 SS G_CDS: -0.09 Total: -34.00 kcal
Atomic # 14 Polarization: 48.44 SS G_CDS: 2.03 Total: 50.46 kcal
Total: -87.57 1.10 -86.47 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001132087693.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 46.411 kcal
(2) G-P(sol) polarization free energy of solvation -87.568 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.157 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.102 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.466 kcal
(6) G-S(sol) free energy of system = (1) + (5) -40.055 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.51 seconds