Wall clock time and date at job start Tue Mar 31 2020 20:00:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.33690 * 126.27315 * 2 1 4 4 C 1.30623 * 108.99497 * 179.97438 * 3 2 1 5 5 C 1.50700 * 125.41952 * 180.02562 * 4 3 2 6 6 C 1.52996 * 109.47236 * 89.97828 * 5 4 3 7 7 C 1.53004 * 117.49943 * 243.74257 * 6 5 4 8 8 C 1.53005 * 117.50068 * 175.08655 * 6 5 4 9 9 O 1.33656 * 109.15242 * 359.73439 * 4 3 2 10 10 C 1.35338 * 107.68792 * 0.43412 * 9 4 3 11 11 C 1.46728 * 126.64692 * 179.84286 * 10 9 4 12 12 O 1.21686 * 119.99853 * 179.68675 * 11 10 9 13 13 N 1.34778 * 119.99834 * 359.68364 * 11 10 9 14 14 C 1.46495 * 119.99718 * 180.02562 * 13 11 10 15 15 H 1.08994 * 109.47210 * 324.99916 * 14 13 11 16 16 C 1.52999 * 109.47389 * 85.00140 * 14 13 11 17 17 C 1.53006 * 109.46696 * 204.99517 * 14 13 11 18 18 C 1.52997 * 109.46841 * 65.00499 * 17 14 13 19 19 H 1.09005 * 109.47159 * 54.99606 * 18 17 14 20 20 C 1.52999 * 109.47264 * 174.99605 * 18 17 14 21 21 N 1.46498 * 109.47167 * 294.99436 * 18 17 14 22 22 C 1.36935 * 120.00239 * 154.99975 * 21 18 17 23 23 H 1.08004 * 120.00069 * 0.02562 * 22 21 18 24 24 C 1.38811 * 120.00368 * 180.02562 * 22 21 18 25 25 N 1.31624 * 119.99540 * 359.72375 * 24 22 21 26 26 Si 1.86800 * 120.00451 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.46758 * 269.72270 * 26 24 22 28 28 H 1.48499 * 109.47026 * 29.72118 * 26 24 22 29 29 H 1.48496 * 109.47474 * 149.72153 * 26 24 22 30 30 H 1.08997 * 109.47269 * 270.04076 * 1 2 3 31 31 H 1.09003 * 109.47464 * 30.04197 * 1 2 3 32 32 H 1.09003 * 109.47060 * 150.03402 * 1 2 3 33 33 H 1.09001 * 109.47066 * 209.97722 * 5 4 3 34 34 H 1.09002 * 109.47501 * 329.97291 * 5 4 3 35 35 H 1.08997 * 115.55023 * 29.41599 * 6 5 4 36 36 H 1.09001 * 117.49613 * 0.02562 * 7 6 5 37 37 H 1.09003 * 117.49687 * 145.01375 * 7 6 5 38 38 H 1.08995 * 117.49751 * 214.97734 * 8 6 5 39 39 H 1.09000 * 117.49577 * 359.97438 * 8 6 5 40 40 H 0.96997 * 119.99976 * 359.97438 * 13 11 10 41 41 H 1.09007 * 109.47428 * 59.99518 * 16 14 13 42 42 H 1.09001 * 109.47632 * 179.97438 * 16 14 13 43 43 H 1.09000 * 109.47086 * 299.99744 * 16 14 13 44 44 H 1.08996 * 109.47489 * 304.99916 * 17 14 13 45 45 H 1.09001 * 109.46720 * 184.99882 * 17 14 13 46 46 H 1.08994 * 109.47102 * 299.99987 * 20 18 17 47 47 H 1.09005 * 109.47033 * 59.99923 * 20 18 17 48 48 H 1.08994 * 109.47214 * 179.97438 * 20 18 17 49 49 H 0.97004 * 119.99747 * 335.00715 * 21 18 17 50 50 H 0.97000 * 120.00481 * 0.27542 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2979 1.0778 0.0000 4 6 3.5452 0.6898 0.0006 5 6 4.7439 1.6031 0.0013 6 6 5.1486 1.9124 1.4440 7 6 5.0483 3.3664 1.9096 8 6 6.4203 2.7353 1.6601 9 8 3.5889 -0.6460 0.0068 10 6 2.3137 -1.0992 0.0004 11 6 1.8827 -2.5017 0.0006 12 8 0.6966 -2.7737 0.0002 13 7 2.8004 -3.4887 0.0012 14 6 2.3701 -4.8890 0.0008 15 1 1.4583 -4.9891 0.5896 16 6 2.1011 -5.3396 -1.4364 17 6 3.4696 -5.7606 0.6110 18 6 3.6519 -5.3936 2.0851 19 1 2.6953 -5.4761 2.6011 20 6 4.6615 -6.3474 2.7270 21 7 4.1456 -4.0182 2.1885 22 6 3.9123 -3.2906 3.3248 23 1 3.3647 -3.7308 4.1451 24 6 4.3796 -1.9872 3.4226 25 7 5.0517 -1.4525 2.4251 26 14 4.0620 -0.9948 4.9730 27 1 2.7816 -0.2555 4.8338 28 1 3.9804 -1.9108 6.1390 29 1 5.1713 -0.0292 5.1787 30 1 -0.3633 0.0007 1.0276 31 1 -0.3634 0.8896 -0.5145 32 1 -0.3633 -0.8903 -0.5133 33 1 5.5727 1.1153 -0.5119 34 1 4.4941 2.5312 -0.5129 35 1 4.9230 1.1339 2.1727 36 1 4.6936 4.1025 1.1882 37 1 4.7569 3.5444 2.9448 38 1 7.0310 2.4983 2.5313 39 1 6.9688 3.0559 0.7745 40 1 3.7458 -3.2719 0.0011 41 1 3.0129 -5.2395 -2.0253 42 1 1.7813 -6.3816 -1.4368 43 1 1.3178 -4.7187 -1.8712 44 1 4.4046 -5.5932 0.0765 45 1 3.1878 -6.8104 0.5302 46 1 4.2942 -7.3707 2.6501 47 1 5.6181 -6.2649 2.2111 48 1 4.7917 -6.0857 3.7770 49 1 4.6377 -3.6229 1.4519 50 1 5.2170 -1.9679 1.6202 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134379504.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:00:59 Heat of formation + Delta-G solvation = 14.375820 kcal Electronic energy + Delta-G solvation = -31340.608970 eV Core-core repulsion = 27370.611713 eV Total energy + Delta-G solvation = -3969.997257 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.77935 -39.31361 -37.19735 -36.94059 -34.79410 -34.27488 -32.49461 -31.93025 -30.63426 -28.87051 -28.28932 -26.84733 -26.38103 -23.46793 -22.61536 -22.04281 -21.48004 -20.66370 -20.39701 -20.08686 -19.71637 -17.55363 -17.35421 -16.27065 -15.97744 -15.77114 -15.10050 -14.85135 -14.37335 -14.18649 -13.89743 -13.75072 -13.58196 -13.39884 -13.10173 -12.97945 -12.82856 -12.66314 -12.47769 -12.20984 -12.04509 -11.78837 -11.78117 -11.63285 -11.26296 -11.20458 -11.13662 -10.79032 -10.49090 -10.47584 -10.40154 -10.29709 -10.15442 -10.05693 -9.97120 -9.61302 -9.55945 -9.16112 -8.97726 -8.60885 -8.11646 -6.98209 -6.06402 -3.04469 1.45594 2.90206 3.05558 3.49503 3.53152 3.60178 3.64091 3.77134 4.17235 4.34623 4.63989 4.95774 5.05180 5.16633 5.17627 5.28344 5.32340 5.37567 5.43871 5.53887 5.59242 5.63734 5.76033 5.82008 5.85011 5.89050 5.90375 5.93586 5.97021 6.01582 6.04273 6.12356 6.14508 6.19573 6.25570 6.31946 6.37290 6.40087 6.42879 6.43783 6.48106 6.77199 6.79959 6.93030 6.94653 7.00188 7.83843 7.88678 8.22610 8.60131 8.76968 9.23404 10.07390 10.23133 11.39715 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.009729 B = 0.005623 C = 0.004254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2877.161834 B = 4978.346245 C = 6580.153416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.062 3.938 3 N -0.498 5.498 4 C 0.239 3.761 5 C 0.013 3.987 6 C -0.143 4.143 7 C -0.184 4.184 8 C -0.173 4.173 9 O -0.152 6.152 10 C -0.102 4.102 11 C 0.620 3.380 12 O -0.537 6.537 13 N -0.687 5.687 14 C 0.150 3.850 15 H 0.087 0.913 16 C -0.163 4.163 17 C -0.135 4.135 18 C 0.175 3.825 19 H 0.048 0.952 20 C -0.162 4.162 21 N -0.726 5.726 22 C -0.324 4.324 23 H 0.059 0.941 24 C -0.035 4.035 25 N -0.928 5.928 26 Si 1.065 2.935 27 H -0.299 1.299 28 H -0.297 1.297 29 H -0.288 1.288 30 H 0.075 0.925 31 H 0.068 0.932 32 H 0.089 0.911 33 H 0.094 0.906 34 H 0.097 0.903 35 H 0.141 0.859 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.094 0.906 39 H 0.089 0.911 40 H 0.403 0.597 41 H 0.053 0.947 42 H 0.063 0.937 43 H 0.058 0.942 44 H 0.063 0.937 45 H 0.076 0.924 46 H 0.036 0.964 47 H 0.043 0.957 48 H 0.053 0.947 49 H 0.360 0.640 50 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.561 0.544 -7.807 7.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.062 4.062 3 N -0.229 5.229 4 C 0.033 3.967 5 C -0.025 4.025 6 C -0.161 4.161 7 C -0.221 4.221 8 C -0.210 4.210 9 O -0.036 6.036 10 C -0.159 4.159 11 C 0.407 3.593 12 O -0.418 6.418 13 N -0.338 5.338 14 C 0.046 3.954 15 H 0.105 0.895 16 C -0.221 4.221 17 C -0.173 4.173 18 C 0.065 3.935 19 H 0.066 0.934 20 C -0.222 4.222 21 N -0.371 5.371 22 C -0.456 4.456 23 H 0.077 0.923 24 C -0.234 4.234 25 N -0.573 5.573 26 Si 0.898 3.102 27 H -0.227 1.227 28 H -0.224 1.224 29 H -0.214 1.214 30 H 0.094 0.906 31 H 0.087 0.913 32 H 0.108 0.892 33 H 0.113 0.887 34 H 0.115 0.885 35 H 0.158 0.842 36 H 0.109 0.891 37 H 0.108 0.892 38 H 0.113 0.887 39 H 0.108 0.892 40 H 0.241 0.759 41 H 0.072 0.928 42 H 0.082 0.918 43 H 0.078 0.922 44 H 0.081 0.919 45 H 0.095 0.905 46 H 0.055 0.945 47 H 0.062 0.938 48 H 0.072 0.928 49 H 0.194 0.806 50 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -1.360 2.299 -6.870 7.371 hybrid contribution 0.693 -2.018 -0.512 2.194 sum -0.668 0.281 -7.382 7.417 Atomic orbital electron populations 1.20251 0.86208 1.03330 1.03201 1.21845 0.97833 0.86878 0.99694 1.70238 1.00497 1.31050 1.21072 1.26028 0.94836 0.79740 0.96091 1.19603 0.90245 0.95236 0.97400 1.22385 1.01312 0.95555 0.96891 1.23045 1.00672 0.96200 1.02211 1.22893 0.90743 1.04254 1.03114 1.84540 1.28608 1.23020 1.67436 1.22694 0.81903 0.95918 1.15349 1.16208 0.85498 0.81603 0.76003 1.90759 1.16035 1.82328 1.52637 1.45863 1.09805 1.05343 1.72793 1.20883 0.98641 0.80145 0.95775 0.89531 1.22214 1.01771 1.01249 0.96865 1.22233 0.98080 0.99032 0.97975 1.20207 0.95673 0.85883 0.91730 0.93371 1.22399 1.00156 0.97869 1.01810 1.42446 1.66800 1.09650 1.18194 1.19931 1.33534 0.97380 0.94723 0.92345 1.25372 0.99169 0.94611 1.04263 1.70760 1.42164 1.38675 1.05708 0.83417 0.76001 0.75825 0.74960 1.22663 1.22436 1.21427 0.90617 0.91273 0.89211 0.88717 0.88484 0.84169 0.89109 0.89164 0.88734 0.89228 0.75932 0.92771 0.91830 0.92241 0.91860 0.90520 0.94524 0.93798 0.92827 0.80552 0.93604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.23 9.87 36.00 0.36 -0.88 16 2 C 0.06 1.26 7.16 -82.47 -0.59 0.67 16 3 N -0.50 -9.92 11.26 -7.07 -0.08 -10.00 16 4 C 0.24 4.58 7.53 -12.79 -0.10 4.48 16 5 C 0.01 0.20 6.12 -27.89 -0.17 0.03 16 6 C -0.14 -2.41 5.72 -90.62 -0.52 -2.93 16 7 C -0.18 -2.63 10.18 -26.69 -0.27 -2.90 16 8 C -0.17 -2.42 10.25 -26.69 -0.27 -2.69 16 9 O -0.15 -3.15 9.73 4.46 0.04 -3.11 16 10 C -0.10 -2.15 7.18 -36.84 -0.26 -2.41 16 11 C 0.62 12.75 7.75 -12.83 -0.10 12.65 16 12 O -0.54 -11.53 14.45 5.20 0.08 -11.45 16 13 N -0.69 -12.56 3.79 -55.10 -0.21 -12.77 16 14 C 0.15 2.38 2.57 -67.93 -0.17 2.20 16 15 H 0.09 1.54 7.58 -51.93 -0.39 1.15 16 16 C -0.16 -2.12 9.48 37.16 0.35 -1.77 16 17 C -0.13 -1.99 4.43 -26.73 -0.12 -2.11 16 18 C 0.17 3.26 2.89 -67.93 -0.20 3.06 16 19 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 20 C -0.16 -2.80 9.49 37.16 0.35 -2.45 16 21 N -0.73 -16.29 3.84 -53.43 -0.21 -16.49 16 22 C -0.32 -8.52 9.93 -15.06 -0.15 -8.67 16 23 H 0.06 1.60 7.83 -52.48 -0.41 1.19 16 24 C -0.04 -0.94 5.50 -17.43 -0.10 -1.04 16 25 N -0.93 -24.35 12.49 55.49 0.69 -23.66 16 26 Si 1.07 25.60 29.92 -169.99 -5.09 20.51 16 27 H -0.30 -7.33 7.11 56.52 0.40 -6.93 16 28 H -0.30 -6.97 7.11 56.52 0.40 -6.56 16 29 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 30 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 31 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 32 H 0.09 1.52 6.47 -51.93 -0.34 1.18 16 33 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 34 H 0.10 1.26 7.88 -51.93 -0.41 0.85 16 35 H 0.14 3.03 7.44 -51.93 -0.39 2.65 16 36 H 0.09 1.13 8.03 -51.93 -0.42 0.71 16 37 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 38 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 39 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 40 H 0.40 7.57 6.31 -40.82 -0.26 7.31 16 41 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 42 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 43 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 44 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 45 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 46 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 47 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 48 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 49 H 0.36 8.16 4.54 -40.82 -0.19 7.97 16 50 H 0.25 6.59 6.53 -40.82 -0.27 6.33 16 LS Contribution 407.52 15.07 6.14 6.14 Total: -1.00 -29.15 407.52 -8.78 -37.93 By element: Atomic # 1 Polarization: 25.86 SS G_CDS: -8.20 Total: 17.66 kcal Atomic # 6 Polarization: -2.79 SS G_CDS: -1.96 Total: -4.75 kcal Atomic # 7 Polarization: -63.12 SS G_CDS: 0.20 Total: -62.92 kcal Atomic # 8 Polarization: -14.68 SS G_CDS: 0.12 Total: -14.56 kcal Atomic # 14 Polarization: 25.60 SS G_CDS: -5.09 Total: 20.51 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -29.15 -8.78 -37.93 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134379504.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.304 kcal (2) G-P(sol) polarization free energy of solvation -29.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.928 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds