Wall clock time and date at job start Tue Mar 31 2020 20:00:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.33690 * 126.27315 * 2 1 4 4 C 1.30623 * 108.99497 * 179.97438 * 3 2 1 5 5 C 1.50700 * 125.41952 * 180.02562 * 4 3 2 6 6 C 1.52996 * 109.47236 * 89.97828 * 5 4 3 7 7 C 1.53004 * 117.49943 * 243.74257 * 6 5 4 8 8 C 1.53005 * 117.50068 * 175.08655 * 6 5 4 9 9 O 1.33656 * 109.15242 * 359.73439 * 4 3 2 10 10 C 1.35338 * 107.68792 * 0.43412 * 9 4 3 11 11 C 1.46728 * 126.64692 * 179.84286 * 10 9 4 12 12 O 1.21686 * 119.99853 * 179.68675 * 11 10 9 13 13 N 1.34778 * 119.99834 * 359.68364 * 11 10 9 14 14 C 1.46495 * 119.99718 * 180.02562 * 13 11 10 15 15 H 1.08994 * 109.47210 * 324.99916 * 14 13 11 16 16 C 1.52999 * 109.47389 * 85.00140 * 14 13 11 17 17 C 1.53006 * 109.46696 * 204.99517 * 14 13 11 18 18 C 1.52997 * 109.46841 * 65.00499 * 17 14 13 19 19 H 1.09005 * 109.47159 * 54.99606 * 18 17 14 20 20 C 1.52999 * 109.47264 * 174.99605 * 18 17 14 21 21 N 1.46498 * 109.47167 * 294.99436 * 18 17 14 22 22 C 1.36935 * 120.00239 * 154.99975 * 21 18 17 23 23 H 1.08004 * 120.00069 * 0.02562 * 22 21 18 24 24 C 1.38811 * 120.00368 * 180.02562 * 22 21 18 25 25 N 1.31624 * 119.99540 * 359.72375 * 24 22 21 26 26 Si 1.86800 * 120.00451 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.46758 * 269.72270 * 26 24 22 28 28 H 1.48499 * 109.47026 * 29.72118 * 26 24 22 29 29 H 1.48496 * 109.47474 * 149.72153 * 26 24 22 30 30 H 1.08997 * 109.47269 * 270.04076 * 1 2 3 31 31 H 1.09003 * 109.47464 * 30.04197 * 1 2 3 32 32 H 1.09003 * 109.47060 * 150.03402 * 1 2 3 33 33 H 1.09001 * 109.47066 * 209.97722 * 5 4 3 34 34 H 1.09002 * 109.47501 * 329.97291 * 5 4 3 35 35 H 1.08997 * 115.55023 * 29.41599 * 6 5 4 36 36 H 1.09001 * 117.49613 * 0.02562 * 7 6 5 37 37 H 1.09003 * 117.49687 * 145.01375 * 7 6 5 38 38 H 1.08995 * 117.49751 * 214.97734 * 8 6 5 39 39 H 1.09000 * 117.49577 * 359.97438 * 8 6 5 40 40 H 0.96997 * 119.99976 * 359.97438 * 13 11 10 41 41 H 1.09007 * 109.47428 * 59.99518 * 16 14 13 42 42 H 1.09001 * 109.47632 * 179.97438 * 16 14 13 43 43 H 1.09000 * 109.47086 * 299.99744 * 16 14 13 44 44 H 1.08996 * 109.47489 * 304.99916 * 17 14 13 45 45 H 1.09001 * 109.46720 * 184.99882 * 17 14 13 46 46 H 1.08994 * 109.47102 * 299.99987 * 20 18 17 47 47 H 1.09005 * 109.47033 * 59.99923 * 20 18 17 48 48 H 1.08994 * 109.47214 * 179.97438 * 20 18 17 49 49 H 0.97004 * 119.99747 * 335.00715 * 21 18 17 50 50 H 0.97000 * 120.00481 * 0.27542 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2979 1.0778 0.0000 4 6 3.5452 0.6898 0.0006 5 6 4.7439 1.6031 0.0013 6 6 5.1486 1.9124 1.4440 7 6 5.0483 3.3664 1.9096 8 6 6.4203 2.7353 1.6601 9 8 3.5889 -0.6460 0.0068 10 6 2.3137 -1.0992 0.0004 11 6 1.8827 -2.5017 0.0006 12 8 0.6966 -2.7737 0.0002 13 7 2.8004 -3.4887 0.0012 14 6 2.3701 -4.8890 0.0008 15 1 1.4583 -4.9891 0.5896 16 6 2.1011 -5.3396 -1.4364 17 6 3.4696 -5.7606 0.6110 18 6 3.6519 -5.3936 2.0851 19 1 2.6953 -5.4761 2.6011 20 6 4.6615 -6.3474 2.7270 21 7 4.1456 -4.0182 2.1885 22 6 3.9123 -3.2906 3.3248 23 1 3.3647 -3.7308 4.1451 24 6 4.3796 -1.9872 3.4226 25 7 5.0517 -1.4525 2.4251 26 14 4.0620 -0.9948 4.9730 27 1 2.7816 -0.2555 4.8338 28 1 3.9804 -1.9108 6.1390 29 1 5.1713 -0.0292 5.1787 30 1 -0.3633 0.0007 1.0276 31 1 -0.3634 0.8896 -0.5145 32 1 -0.3633 -0.8903 -0.5133 33 1 5.5727 1.1153 -0.5119 34 1 4.4941 2.5312 -0.5129 35 1 4.9230 1.1339 2.1727 36 1 4.6936 4.1025 1.1882 37 1 4.7569 3.5444 2.9448 38 1 7.0310 2.4983 2.5313 39 1 6.9688 3.0559 0.7745 40 1 3.7458 -3.2719 0.0011 41 1 3.0129 -5.2395 -2.0253 42 1 1.7813 -6.3816 -1.4368 43 1 1.3178 -4.7187 -1.8712 44 1 4.4046 -5.5932 0.0765 45 1 3.1878 -6.8104 0.5302 46 1 4.2942 -7.3707 2.6501 47 1 5.6181 -6.2649 2.2111 48 1 4.7917 -6.0857 3.7770 49 1 4.6377 -3.6229 1.4519 50 1 5.2170 -1.9679 1.6202 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001134379504.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:00:58 Heat of formation + Delta-G solvation = -3.350288 kcal Electronic energy + Delta-G solvation = -31341.377632 eV Core-core repulsion = 27370.611713 eV Total energy + Delta-G solvation = -3970.765919 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -44.29668 -40.81440 -38.53887 -38.33418 -36.34599 -35.88213 -34.20602 -33.36660 -32.07435 -30.19051 -30.00613 -28.26109 -27.66163 -25.41531 -24.03694 -23.15654 -22.93349 -22.14492 -21.80773 -21.46931 -21.16919 -19.31662 -19.04972 -17.79394 -17.41820 -17.11589 -16.74621 -16.26041 -15.91785 -15.82911 -15.57713 -15.25013 -15.04556 -14.75849 -14.47349 -14.40017 -14.22962 -13.92221 -13.83136 -13.55868 -13.41921 -13.21710 -13.09518 -12.91650 -12.80074 -12.59097 -12.51152 -12.28324 -12.20367 -11.95642 -11.90961 -11.84826 -11.80093 -11.64854 -11.21795 -11.11377 -11.07699 -10.87400 -10.77423 -10.14438 -9.62252 -8.86385 -8.13630 -5.06715 -0.08900 1.39670 1.49614 1.55724 1.57906 1.68506 2.08868 2.29883 2.66993 2.91896 3.03234 3.54438 3.63039 3.75460 3.81070 3.87656 3.90652 4.05979 4.08701 4.19221 4.26209 4.33773 4.46498 4.55790 4.57794 4.61231 4.65411 4.70638 4.75202 4.77538 4.77629 4.80367 4.84289 4.96610 4.97852 5.00615 5.02704 5.05279 5.09707 5.29050 5.31312 5.33994 5.37430 5.51464 5.56051 5.57173 5.75330 6.35471 6.69594 6.72123 7.06046 7.28987 8.14414 8.27791 9.32178 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.009729 B = 0.005623 C = 0.004254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2877.161834 B = 4978.346245 C = 6580.153416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.052 3.948 3 N -0.509 5.509 4 C 0.237 3.763 5 C 0.018 3.982 6 C -0.172 4.172 7 C -0.174 4.174 8 C -0.154 4.154 9 O -0.164 6.164 10 C -0.131 4.131 11 C 0.612 3.388 12 O -0.556 6.556 13 N -0.681 5.681 14 C 0.145 3.855 15 H 0.063 0.937 16 C -0.151 4.151 17 C -0.120 4.120 18 C 0.167 3.833 19 H 0.026 0.974 20 C -0.152 4.152 21 N -0.730 5.730 22 C -0.331 4.331 23 H 0.038 0.962 24 C -0.073 4.073 25 N -0.925 5.925 26 Si 1.096 2.904 27 H -0.310 1.310 28 H -0.289 1.289 29 H -0.286 1.286 30 H 0.073 0.927 31 H 0.093 0.907 32 H 0.087 0.913 33 H 0.109 0.891 34 H 0.128 0.872 35 H 0.089 0.911 36 H 0.116 0.884 37 H 0.081 0.919 38 H 0.085 0.915 39 H 0.121 0.879 40 H 0.401 0.599 41 H 0.066 0.934 42 H 0.091 0.909 43 H 0.043 0.957 44 H 0.074 0.926 45 H 0.114 0.886 46 H 0.071 0.929 47 H 0.046 0.954 48 H 0.025 0.975 49 H 0.359 0.641 50 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.302 0.378 -9.274 9.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.073 4.073 3 N -0.240 5.240 4 C 0.031 3.969 5 C -0.019 4.019 6 C -0.191 4.191 7 C -0.211 4.211 8 C -0.191 4.191 9 O -0.049 6.049 10 C -0.187 4.187 11 C 0.398 3.602 12 O -0.438 6.438 13 N -0.330 5.330 14 C 0.042 3.958 15 H 0.081 0.919 16 C -0.209 4.209 17 C -0.158 4.158 18 C 0.059 3.941 19 H 0.044 0.956 20 C -0.211 4.211 21 N -0.374 5.374 22 C -0.463 4.463 23 H 0.057 0.943 24 C -0.270 4.270 25 N -0.570 5.570 26 Si 0.928 3.072 27 H -0.239 1.239 28 H -0.215 1.215 29 H -0.212 1.212 30 H 0.091 0.909 31 H 0.112 0.888 32 H 0.106 0.894 33 H 0.128 0.872 34 H 0.146 0.854 35 H 0.108 0.892 36 H 0.134 0.866 37 H 0.100 0.900 38 H 0.104 0.896 39 H 0.139 0.861 40 H 0.237 0.763 41 H 0.086 0.914 42 H 0.110 0.890 43 H 0.062 0.938 44 H 0.093 0.907 45 H 0.132 0.868 46 H 0.089 0.911 47 H 0.065 0.935 48 H 0.044 0.956 49 H 0.193 0.807 50 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -0.487 2.083 -8.340 8.610 hybrid contribution 0.424 -1.977 -0.004 2.022 sum -0.063 0.106 -8.344 8.345 Atomic orbital electron populations 1.20288 0.84435 1.04431 1.03302 1.22392 0.99195 0.86860 0.98814 1.70264 1.00865 1.30955 1.21905 1.26960 0.95861 0.79640 0.94399 1.19842 0.89271 0.95826 0.96994 1.22148 1.04695 0.95712 0.96554 1.23137 1.00756 0.94812 1.02377 1.22976 0.90153 1.02064 1.03910 1.84524 1.28664 1.23906 1.67851 1.22914 0.82288 0.96529 1.16937 1.16333 0.85626 0.81996 0.76199 1.90727 1.16587 1.82652 1.53874 1.45935 1.09244 1.06107 1.71744 1.21083 0.98050 0.79057 0.97636 0.91850 1.22115 1.01948 1.02464 0.94422 1.22150 0.98240 1.00709 0.94716 1.20417 0.94789 0.84376 0.94550 0.95606 1.22245 0.99888 0.99268 0.99737 1.42447 1.66999 1.11024 1.16979 1.19937 1.33132 0.97762 0.95492 0.94339 1.26053 0.99773 0.95512 1.05682 1.70845 1.42296 1.38383 1.05522 0.82967 0.75217 0.75128 0.73911 1.23882 1.21511 1.21244 0.90851 0.88805 0.89419 0.87243 0.85431 0.89233 0.86588 0.90002 0.89644 0.86116 0.76255 0.91447 0.88981 0.93799 0.90690 0.86783 0.91054 0.93455 0.95613 0.80712 0.94101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.30 9.87 71.23 0.70 -1.59 16 2 C 0.05 2.13 7.16 41.83 0.30 2.43 16 3 N -0.51 -20.27 11.26 -291.07 -3.28 -23.55 16 4 C 0.24 9.09 7.53 88.29 0.66 9.75 16 5 C 0.02 0.54 6.12 29.85 0.18 0.72 16 6 C -0.17 -5.70 5.72 -10.79 -0.06 -5.76 16 7 C -0.17 -4.65 10.18 30.62 0.31 -4.34 16 8 C -0.15 -4.00 10.25 30.62 0.31 -3.68 16 9 O -0.16 -6.97 9.73 -6.95 -0.07 -7.04 16 10 C -0.13 -5.64 7.18 24.05 0.17 -5.47 16 11 C 0.61 25.83 7.75 86.46 0.67 26.50 16 12 O -0.56 -24.55 14.45 -4.30 -0.06 -24.62 16 13 N -0.68 -25.13 3.79 -446.46 -1.69 -26.83 16 14 C 0.15 4.47 2.57 44.99 0.12 4.59 16 15 H 0.06 2.26 7.58 -2.39 -0.02 2.24 16 16 C -0.15 -3.62 9.48 71.98 0.68 -2.93 16 17 C -0.12 -3.27 4.43 30.60 0.14 -3.14 16 18 C 0.17 6.13 2.89 44.99 0.13 6.26 16 19 H 0.03 1.06 8.08 -2.38 -0.02 1.04 16 20 C -0.15 -5.01 9.49 71.98 0.68 -4.32 16 21 N -0.73 -33.15 3.84 -322.94 -1.24 -34.39 16 22 C -0.33 -17.85 9.93 84.03 0.83 -17.02 16 23 H 0.04 2.19 7.83 -2.91 -0.02 2.17 16 24 C -0.07 -3.98 5.50 84.86 0.47 -3.52 16 25 N -0.92 -49.60 12.49 21.65 0.27 -49.33 16 26 Si 1.10 53.32 29.92 68.60 2.05 55.37 16 27 H -0.31 -15.53 7.11 99.48 0.71 -14.83 16 28 H -0.29 -13.46 7.11 99.48 0.71 -12.76 16 29 H -0.29 -13.71 7.11 99.48 0.71 -13.01 16 30 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 31 H 0.09 2.66 8.14 -2.39 -0.02 2.64 16 32 H 0.09 3.00 6.47 -2.39 -0.02 2.99 16 33 H 0.11 2.85 8.14 -2.39 -0.02 2.83 16 34 H 0.13 2.94 7.88 -2.39 -0.02 2.92 16 35 H 0.09 3.98 7.44 -2.39 -0.02 3.96 16 36 H 0.12 2.51 8.03 -2.39 -0.02 2.49 16 37 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 38 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 39 H 0.12 2.38 8.14 -2.39 -0.02 2.36 16 40 H 0.40 15.20 6.31 -92.71 -0.58 14.62 16 41 H 0.07 1.45 8.14 -2.38 -0.02 1.43 16 42 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 43 H 0.04 1.19 8.14 -2.39 -0.02 1.18 16 44 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 45 H 0.11 2.33 8.14 -2.39 -0.02 2.31 16 46 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 47 H 0.05 1.52 8.14 -2.38 -0.02 1.50 16 48 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 49 H 0.36 16.41 4.54 -92.71 -0.42 15.99 16 50 H 0.25 13.22 6.53 -92.71 -0.61 12.61 16 Total: -1.00 -66.15 407.52 2.39 -63.75 By element: Atomic # 1 Polarization: 48.05 SS G_CDS: 0.11 Total: 48.16 kcal Atomic # 6 Polarization: -7.83 SS G_CDS: 6.31 Total: -1.52 kcal Atomic # 7 Polarization: -128.16 SS G_CDS: -5.94 Total: -134.11 kcal Atomic # 8 Polarization: -31.53 SS G_CDS: -0.13 Total: -31.66 kcal Atomic # 14 Polarization: 53.32 SS G_CDS: 2.05 Total: 55.37 kcal Total: -66.15 2.39 -63.75 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134379504.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.404 kcal (2) G-P(sol) polarization free energy of solvation -66.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds