Wall clock time and date at job start Tue Mar 31 2020 19:50:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42897 * 114.00445 * 2 1 4 4 C 1.52996 * 109.47272 * 179.97438 * 3 2 1 5 5 C 1.52991 * 109.46071 * 299.96998 * 4 3 2 6 6 N 1.46500 * 109.47310 * 60.02787 * 5 4 3 7 7 C 1.34777 * 120.00492 * 180.02562 * 6 5 4 8 8 O 1.21634 * 119.99488 * 359.97438 * 7 6 5 9 9 C 1.47261 * 120.00546 * 180.02562 * 7 6 5 10 10 C 1.36769 * 126.93807 * 0.02562 * 9 7 6 11 11 N 1.34657 * 108.39617 * 180.02562 * 10 9 7 12 12 H 0.97004 * 124.85264 * 180.02562 * 11 10 9 13 13 C 1.36444 * 110.29690 * 359.97438 * 11 10 9 14 14 C 1.34491 * 108.85837 * 359.71041 * 13 11 10 15 15 C 1.50691 * 126.83688 * 180.26678 * 14 13 11 16 16 C 1.53042 * 109.45987 * 179.97438 * 4 3 2 17 17 C 1.53196 * 109.31301 * 178.62714 * 16 4 3 18 18 N 1.46919 * 108.77357 * 54.63738 * 17 16 4 19 19 C 1.36935 * 120.62952 * 126.36714 * 18 17 16 20 20 H 1.07992 * 120.00276 * 332.45452 * 19 18 17 21 21 C 1.38815 * 120.00026 * 152.17450 * 19 18 17 22 22 N 1.31620 * 119.99785 * 343.17001 * 21 19 18 23 23 Si 1.86799 * 120.00242 * 163.17219 * 21 19 18 24 24 H 1.48499 * 109.47051 * 59.99668 * 23 21 19 25 25 H 1.48497 * 109.47273 * 180.02562 * 23 21 19 26 26 H 1.48505 * 109.46803 * 299.99780 * 23 21 19 27 27 C 1.46930 * 118.74055 * 306.64082 * 18 17 16 28 28 C 1.52762 * 109.00426 * 53.31040 * 27 18 17 29 29 H 1.08996 * 109.47609 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47368 * 300.00942 * 1 2 3 31 31 H 1.09007 * 109.46981 * 60.00195 * 1 2 3 32 32 H 1.08996 * 109.47051 * 59.99220 * 3 2 1 33 33 H 1.09008 * 109.46718 * 299.99574 * 3 2 1 34 34 H 1.09006 * 109.47543 * 180.02562 * 5 4 3 35 35 H 1.09001 * 109.47293 * 300.02529 * 5 4 3 36 36 H 0.96998 * 119.99663 * 359.97438 * 6 5 4 37 37 H 1.08003 * 125.80479 * 359.97438 * 10 9 7 38 38 H 1.08009 * 125.57255 * 180.02562 * 13 11 10 39 39 H 1.09000 * 109.47234 * 270.20537 * 15 14 13 40 40 H 1.09009 * 109.47314 * 30.20409 * 15 14 13 41 41 H 1.08997 * 109.47387 * 150.20573 * 15 14 13 42 42 H 1.09005 * 109.49382 * 58.67827 * 16 4 3 43 43 H 1.08998 * 109.50244 * 298.58001 * 16 4 3 44 44 H 1.09000 * 109.58299 * 294.85003 * 17 16 4 45 45 H 1.08994 * 109.70288 * 174.49711 * 17 16 4 46 46 H 0.97003 * 120.00199 * 179.97438 * 22 21 19 47 47 H 1.08999 * 109.58738 * 173.14187 * 27 18 17 48 48 H 1.08996 * 109.58558 * 293.57263 * 27 18 17 49 49 H 1.09005 * 109.56252 * 185.54994 * 28 27 18 50 50 H 1.08999 * 109.38709 * 65.51901 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 6 3.9861 0.4261 1.2506 6 7 3.3906 -0.9124 1.2509 7 6 3.6487 -1.7646 2.2627 8 8 4.3764 -1.4225 3.1753 9 6 3.0505 -3.1103 2.2628 10 6 2.2190 -3.6402 1.3150 11 7 1.8949 -4.8932 1.6866 12 1 1.3154 -5.4878 1.1850 13 6 2.4990 -5.2074 2.8690 14 6 3.2315 -4.1554 3.2759 15 6 4.0679 -4.0664 4.5262 16 6 4.1577 2.5827 0.0000 17 6 5.6842 2.4579 0.0353 18 7 6.1149 1.6053 -1.0810 19 6 7.0604 2.0436 -1.9692 20 1 7.1785 3.1010 -2.1543 21 6 7.8713 1.1291 -2.6274 22 7 7.9743 -0.1031 -2.1762 23 14 8.8162 1.6472 -4.1532 24 1 9.7363 2.7614 -3.8110 25 1 9.6015 0.4950 -4.6641 26 1 7.8612 2.0968 -5.1978 27 6 5.5073 0.2759 -1.2298 28 6 3.9868 0.4229 -1.2477 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5140 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.6886 1.8463 0.8899 33 1 1.6887 1.8463 -0.8901 34 1 5.0728 0.3402 1.2515 35 1 3.6637 0.9675 2.1400 36 1 2.8100 -1.1850 0.5233 37 1 1.8792 -3.1386 0.4209 38 1 2.4083 -6.1490 3.3902 39 1 3.4583 -3.6838 5.3448 40 1 4.4422 -5.0572 4.7844 41 1 4.9084 -3.3941 4.3541 42 1 3.8173 3.1328 0.8773 43 1 3.8570 3.1144 -0.9027 44 1 5.9922 2.0077 0.9790 45 1 6.1360 3.4449 -0.0633 46 1 8.5406 -0.7423 -2.6363 47 1 5.8403 -0.1756 -2.1644 48 1 5.8007 -0.3559 -0.3915 49 1 3.5248 -0.5643 -1.2585 50 1 3.6871 0.9746 -2.1387 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001162604130.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:40 Heat of formation + Delta-G solvation = -14.576921 kcal Electronic energy + Delta-G solvation = -30868.611079 eV Core-core repulsion = 26897.358337 eV Total energy + Delta-G solvation = -3971.252742 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.09801 -39.70206 -38.02137 -37.05690 -34.36512 -32.93071 -32.32015 -30.93584 -29.91490 -29.73016 -27.63834 -26.47008 -26.16997 -25.51416 -23.80456 -22.51365 -22.06078 -20.83558 -19.74251 -19.19304 -18.39672 -17.90034 -16.70470 -16.27318 -15.80777 -15.62806 -15.42269 -14.98480 -14.76692 -14.56849 -14.04910 -13.87593 -13.73388 -13.41282 -13.36811 -13.14554 -13.09419 -12.69360 -12.65568 -12.56079 -12.22573 -12.13909 -11.85369 -11.55001 -11.38368 -11.27579 -11.20484 -10.85514 -10.67936 -10.48192 -10.21130 -10.11440 -9.83633 -9.70083 -9.47330 -9.33630 -9.30662 -8.62209 -8.39982 -8.27660 -8.19852 -6.58699 -5.71788 -3.14251 1.94469 2.47217 3.20494 3.41900 3.47702 3.48489 3.55990 3.97012 4.05199 4.54632 4.90335 5.02590 5.05767 5.08227 5.20839 5.26323 5.34461 5.35666 5.46326 5.48926 5.53829 5.57241 5.62477 5.71543 5.78167 5.81900 5.90583 5.97174 6.10341 6.13849 6.21047 6.32181 6.39136 6.47163 6.48197 6.66937 6.69591 6.78465 6.88605 6.89924 6.95078 7.00332 7.14005 7.15424 7.43244 7.45747 7.76514 7.85411 8.26285 8.51510 8.91309 9.28041 9.91658 10.48546 11.36366 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011949 B = 0.003648 C = 0.003228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2342.678453 B = 7674.410799 C = 8671.893751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.390 6.390 3 C 0.073 3.927 4 C -0.059 4.059 5 C 0.135 3.865 6 N -0.708 5.708 7 C 0.580 3.420 8 O -0.555 6.555 9 C -0.216 4.216 10 C 0.045 3.955 11 N -0.553 5.553 12 H 0.414 0.586 13 C -0.033 4.033 14 C -0.111 4.111 15 C -0.082 4.082 16 C -0.119 4.119 17 C 0.143 3.857 18 N -0.591 5.591 19 C -0.254 4.254 20 H 0.064 0.936 21 C 0.003 3.997 22 N -0.900 5.900 23 Si 0.901 3.099 24 H -0.283 1.283 25 H -0.291 1.291 26 H -0.285 1.285 27 C 0.170 3.830 28 C -0.124 4.124 29 H 0.080 0.920 30 H 0.038 0.962 31 H 0.039 0.961 32 H 0.046 0.954 33 H 0.050 0.950 34 H 0.083 0.917 35 H 0.053 0.947 36 H 0.405 0.595 37 H 0.171 0.829 38 H 0.166 0.834 39 H 0.060 0.940 40 H 0.055 0.945 41 H 0.080 0.920 42 H 0.054 0.946 43 H 0.065 0.935 44 H 0.023 0.977 45 H 0.055 0.945 46 H 0.254 0.746 47 H 0.085 0.915 48 H 0.023 0.977 49 H 0.053 0.947 50 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.609 -6.858 6.437 20.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.309 6.309 3 C -0.003 4.003 4 C -0.060 4.060 5 C 0.011 3.989 6 N -0.364 5.364 7 C 0.368 3.632 8 O -0.434 6.434 9 C -0.226 4.226 10 C -0.091 4.091 11 N -0.147 5.147 12 H 0.250 0.750 13 C -0.160 4.160 14 C -0.117 4.117 15 C -0.140 4.140 16 C -0.159 4.159 17 C 0.017 3.983 18 N -0.313 5.313 19 C -0.383 4.383 20 H 0.082 0.918 21 C -0.195 4.195 22 N -0.544 5.544 23 Si 0.731 3.269 24 H -0.209 1.209 25 H -0.217 1.217 26 H -0.212 1.212 27 C 0.045 3.955 28 C -0.164 4.164 29 H 0.099 0.901 30 H 0.056 0.944 31 H 0.058 0.942 32 H 0.064 0.936 33 H 0.068 0.932 34 H 0.101 0.899 35 H 0.072 0.928 36 H 0.246 0.754 37 H 0.188 0.812 38 H 0.183 0.817 39 H 0.079 0.921 40 H 0.074 0.926 41 H 0.099 0.901 42 H 0.073 0.927 43 H 0.083 0.917 44 H 0.041 0.959 45 H 0.074 0.926 46 H 0.064 0.936 47 H 0.103 0.897 48 H 0.041 0.959 49 H 0.072 0.928 50 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -17.929 -6.996 6.945 20.460 hybrid contribution -0.410 0.037 -1.517 1.572 sum -18.339 -6.959 5.428 20.352 Atomic orbital electron populations 1.22681 0.81595 1.02234 0.99777 1.87568 1.19106 1.28927 1.95314 1.22762 0.94017 0.83822 0.99736 1.20803 0.91313 0.97260 0.96606 1.21386 0.99449 0.82032 0.96041 1.46048 1.50504 1.14615 1.25195 1.17397 0.80350 0.83429 0.82014 1.90716 1.38369 1.77670 1.36668 1.20495 1.07250 0.96025 0.98879 1.21952 1.00840 0.85955 1.00342 1.41442 1.40162 1.13283 1.19856 0.74958 1.21509 1.03138 1.00971 0.90385 1.20569 1.01030 0.92432 0.97713 1.20180 0.99246 1.01541 0.93005 1.21984 0.99349 0.93598 1.00942 1.20927 0.90567 0.95385 0.91461 1.44015 1.44605 1.14907 1.27815 1.19132 1.10401 0.92230 1.16574 0.91785 1.25029 0.97532 0.96632 1.00338 1.70039 1.40749 1.04420 1.39230 0.86402 0.79592 0.77380 0.83567 1.20936 1.21707 1.21153 1.20712 0.86356 0.86759 1.01686 1.22095 1.00925 0.98318 0.95018 0.90115 0.94363 0.94236 0.93598 0.93213 0.89913 0.92831 0.75448 0.81185 0.81719 0.92104 0.92645 0.90098 0.92723 0.91666 0.95915 0.92633 0.93639 0.89703 0.95930 0.92816 0.92696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 101.05 1.11 1.41 16 2 O -0.39 -4.77 6.73 -35.23 -0.24 -5.00 16 3 C 0.07 0.95 4.80 37.16 0.18 1.13 16 4 C -0.06 -0.95 0.51 -154.47 -0.08 -1.03 16 5 C 0.13 2.39 3.80 -4.05 -0.02 2.37 16 6 N -0.71 -11.79 4.62 -61.44 -0.28 -12.07 16 7 C 0.58 10.61 7.81 -12.59 -0.10 10.51 16 8 O -0.55 -12.01 15.32 5.25 0.08 -11.93 16 9 C -0.22 -3.29 6.29 -103.35 -0.65 -3.94 16 10 C 0.04 0.51 11.40 -16.84 -0.19 0.32 16 11 N -0.55 -4.85 5.90 -12.84 -0.08 -4.93 16 12 H 0.41 2.04 8.96 -40.82 -0.37 1.68 16 13 C -0.03 -0.34 11.82 -16.82 -0.20 -0.53 16 14 C -0.11 -1.53 6.35 -102.54 -0.65 -2.19 16 15 C -0.08 -1.09 9.97 36.00 0.36 -0.73 16 16 C -0.12 -1.97 4.91 -26.61 -0.13 -2.10 16 17 C 0.14 2.97 6.05 -3.71 -0.02 2.95 16 18 N -0.59 -14.69 3.00 -172.59 -0.52 -15.21 16 19 C -0.25 -6.97 9.58 -15.06 -0.14 -7.11 16 20 H 0.06 1.72 7.88 -52.49 -0.41 1.31 16 21 C 0.00 0.10 4.92 -17.43 -0.09 0.01 16 22 N -0.90 -26.52 11.18 55.49 0.62 -25.90 16 23 Si 0.90 21.83 29.59 -169.99 -5.03 16.81 16 24 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 25 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 26 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 27 C 0.17 4.06 4.81 -3.93 -0.02 4.04 16 28 C -0.12 -2.31 4.57 -26.83 -0.12 -2.43 16 29 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.05 0.62 8.14 -51.92 -0.42 0.19 16 34 H 0.08 1.78 4.99 -51.93 -0.26 1.52 16 35 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 36 H 0.40 6.02 3.65 -40.82 -0.15 5.87 16 37 H 0.17 1.55 7.45 -52.48 -0.39 1.16 16 38 H 0.17 1.15 8.06 -52.48 -0.42 0.73 16 39 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 40 H 0.05 0.59 8.14 -51.92 -0.42 0.17 16 41 H 0.08 1.30 6.86 -51.93 -0.36 0.94 16 42 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 44 H 0.02 0.50 6.69 -51.93 -0.35 0.15 16 45 H 0.06 1.13 7.93 -51.93 -0.41 0.72 16 46 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 47 H 0.08 2.29 6.05 -51.93 -0.31 1.97 16 48 H 0.02 0.59 6.70 -51.93 -0.35 0.24 16 49 H 0.05 0.93 6.49 -51.93 -0.34 0.59 16 50 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 385.88 15.07 5.82 5.82 Total: -1.00 -34.26 385.88 -8.29 -42.55 By element: Atomic # 1 Polarization: 15.10 SS G_CDS: -7.90 Total: 7.19 kcal Atomic # 6 Polarization: 3.43 SS G_CDS: -0.76 Total: 2.67 kcal Atomic # 7 Polarization: -57.85 SS G_CDS: -0.26 Total: -58.11 kcal Atomic # 8 Polarization: -16.78 SS G_CDS: -0.16 Total: -16.93 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.03 Total: 16.81 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -34.26 -8.29 -42.55 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162604130.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.977 kcal (2) G-P(sol) polarization free energy of solvation -34.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds