Wall clock time and date at job start Tue Mar 31 2020 19:50:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42897 * 114.00445 * 2 1 4 4 C 1.52996 * 109.47272 * 179.97438 * 3 2 1 5 5 C 1.52991 * 109.46071 * 299.96998 * 4 3 2 6 6 N 1.46500 * 109.47310 * 60.02787 * 5 4 3 7 7 C 1.34777 * 120.00492 * 180.02562 * 6 5 4 8 8 O 1.21634 * 119.99488 * 359.97438 * 7 6 5 9 9 C 1.47261 * 120.00546 * 180.02562 * 7 6 5 10 10 C 1.36769 * 126.93807 * 0.02562 * 9 7 6 11 11 N 1.34657 * 108.39617 * 180.02562 * 10 9 7 12 12 H 0.97004 * 124.85264 * 180.02562 * 11 10 9 13 13 C 1.36444 * 110.29690 * 359.97438 * 11 10 9 14 14 C 1.34491 * 108.85837 * 359.71041 * 13 11 10 15 15 C 1.50691 * 126.83688 * 180.26678 * 14 13 11 16 16 C 1.53042 * 109.45987 * 179.97438 * 4 3 2 17 17 C 1.53196 * 109.31301 * 178.62714 * 16 4 3 18 18 N 1.46919 * 108.77357 * 54.63738 * 17 16 4 19 19 C 1.36935 * 120.62952 * 126.36714 * 18 17 16 20 20 H 1.07992 * 120.00276 * 332.45452 * 19 18 17 21 21 C 1.38815 * 120.00026 * 152.17450 * 19 18 17 22 22 N 1.31620 * 119.99785 * 343.17001 * 21 19 18 23 23 Si 1.86799 * 120.00242 * 163.17219 * 21 19 18 24 24 H 1.48499 * 109.47051 * 59.99668 * 23 21 19 25 25 H 1.48497 * 109.47273 * 180.02562 * 23 21 19 26 26 H 1.48505 * 109.46803 * 299.99780 * 23 21 19 27 27 C 1.46930 * 118.74055 * 306.64082 * 18 17 16 28 28 C 1.52762 * 109.00426 * 53.31040 * 27 18 17 29 29 H 1.08996 * 109.47609 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47368 * 300.00942 * 1 2 3 31 31 H 1.09007 * 109.46981 * 60.00195 * 1 2 3 32 32 H 1.08996 * 109.47051 * 59.99220 * 3 2 1 33 33 H 1.09008 * 109.46718 * 299.99574 * 3 2 1 34 34 H 1.09006 * 109.47543 * 180.02562 * 5 4 3 35 35 H 1.09001 * 109.47293 * 300.02529 * 5 4 3 36 36 H 0.96998 * 119.99663 * 359.97438 * 6 5 4 37 37 H 1.08003 * 125.80479 * 359.97438 * 10 9 7 38 38 H 1.08009 * 125.57255 * 180.02562 * 13 11 10 39 39 H 1.09000 * 109.47234 * 270.20537 * 15 14 13 40 40 H 1.09009 * 109.47314 * 30.20409 * 15 14 13 41 41 H 1.08997 * 109.47387 * 150.20573 * 15 14 13 42 42 H 1.09005 * 109.49382 * 58.67827 * 16 4 3 43 43 H 1.08998 * 109.50244 * 298.58001 * 16 4 3 44 44 H 1.09000 * 109.58299 * 294.85003 * 17 16 4 45 45 H 1.08994 * 109.70288 * 174.49711 * 17 16 4 46 46 H 0.97003 * 120.00199 * 179.97438 * 22 21 19 47 47 H 1.08999 * 109.58738 * 173.14187 * 27 18 17 48 48 H 1.08996 * 109.58558 * 293.57263 * 27 18 17 49 49 H 1.09005 * 109.56252 * 185.54994 * 28 27 18 50 50 H 1.08999 * 109.38709 * 65.51901 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 6 3.9861 0.4261 1.2506 6 7 3.3906 -0.9124 1.2509 7 6 3.6487 -1.7646 2.2627 8 8 4.3764 -1.4225 3.1753 9 6 3.0505 -3.1103 2.2628 10 6 2.2190 -3.6402 1.3150 11 7 1.8949 -4.8932 1.6866 12 1 1.3154 -5.4878 1.1850 13 6 2.4990 -5.2074 2.8690 14 6 3.2315 -4.1554 3.2759 15 6 4.0679 -4.0664 4.5262 16 6 4.1577 2.5827 0.0000 17 6 5.6842 2.4579 0.0353 18 7 6.1149 1.6053 -1.0810 19 6 7.0604 2.0436 -1.9692 20 1 7.1785 3.1010 -2.1543 21 6 7.8713 1.1291 -2.6274 22 7 7.9743 -0.1031 -2.1762 23 14 8.8162 1.6472 -4.1532 24 1 9.7363 2.7614 -3.8110 25 1 9.6015 0.4950 -4.6641 26 1 7.8612 2.0968 -5.1978 27 6 5.5073 0.2759 -1.2298 28 6 3.9868 0.4229 -1.2477 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5140 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.6886 1.8463 0.8899 33 1 1.6887 1.8463 -0.8901 34 1 5.0728 0.3402 1.2515 35 1 3.6637 0.9675 2.1400 36 1 2.8100 -1.1850 0.5233 37 1 1.8792 -3.1386 0.4209 38 1 2.4083 -6.1490 3.3902 39 1 3.4583 -3.6838 5.3448 40 1 4.4422 -5.0572 4.7844 41 1 4.9084 -3.3941 4.3541 42 1 3.8173 3.1328 0.8773 43 1 3.8570 3.1144 -0.9027 44 1 5.9922 2.0077 0.9790 45 1 6.1360 3.4449 -0.0633 46 1 8.5406 -0.7423 -2.6363 47 1 5.8403 -0.1756 -2.1644 48 1 5.8007 -0.3559 -0.3915 49 1 3.5248 -0.5643 -1.2585 50 1 3.6871 0.9746 -2.1387 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162604130.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:39 Heat of formation + Delta-G solvation = -38.134492 kcal Electronic energy + Delta-G solvation = -30869.632612 eV Core-core repulsion = 26897.358337 eV Total energy + Delta-G solvation = -3972.274275 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.04068 -41.04157 -39.39404 -38.25534 -36.01359 -34.53486 -33.28368 -32.73387 -31.61772 -30.80963 -28.93986 -27.46003 -27.38924 -26.72830 -25.46142 -23.96980 -23.43050 -22.49384 -20.76223 -20.47932 -19.60279 -19.13324 -18.35222 -17.38720 -17.03059 -16.86750 -16.75712 -16.48564 -16.12221 -15.87560 -15.34013 -15.28819 -15.13759 -14.85737 -14.65692 -14.49574 -14.26845 -14.10953 -13.93548 -13.57968 -13.53308 -13.29491 -13.23328 -13.03456 -12.92529 -12.59610 -12.52570 -12.29690 -12.27487 -12.26279 -11.98443 -11.80736 -11.41911 -11.19593 -11.08777 -10.74974 -10.52299 -10.44593 -9.90929 -9.41669 -9.12114 -8.63494 -7.84016 -5.29920 0.88215 1.47191 1.49365 1.55224 1.56498 2.35145 2.51638 2.53685 2.70010 2.96269 3.30381 3.69786 3.77010 3.95106 4.02276 4.05121 4.20373 4.31030 4.35618 4.49186 4.52595 4.53861 4.58578 4.65890 4.69122 4.70556 4.74290 4.82141 4.90150 4.92542 4.94466 4.96027 4.99013 5.06103 5.18375 5.20924 5.26582 5.31417 5.37048 5.40256 5.51332 5.66325 5.76547 5.82144 5.89042 6.01775 6.29669 6.41214 6.75881 6.96708 7.17618 7.57747 7.89752 8.41811 9.21982 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011949 B = 0.003648 C = 0.003228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2342.678453 B = 7674.410799 C = 8671.893751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.407 6.407 3 C 0.083 3.917 4 C -0.051 4.051 5 C 0.143 3.857 6 N -0.697 5.697 7 C 0.570 3.430 8 O -0.605 6.605 9 C -0.267 4.267 10 C 0.067 3.933 11 N -0.531 5.531 12 H 0.438 0.562 13 C -0.006 4.006 14 C -0.156 4.156 15 C -0.077 4.077 16 C -0.108 4.108 17 C 0.137 3.863 18 N -0.608 5.608 19 C -0.263 4.263 20 H 0.070 0.930 21 C -0.052 4.052 22 N -0.937 5.937 23 Si 0.968 3.032 24 H -0.276 1.276 25 H -0.297 1.297 26 H -0.275 1.275 27 C 0.183 3.817 28 C -0.108 4.108 29 H 0.100 0.900 30 H 0.042 0.958 31 H 0.050 0.950 32 H 0.061 0.939 33 H 0.066 0.934 34 H 0.034 0.966 35 H 0.055 0.945 36 H 0.414 0.586 37 H 0.195 0.805 38 H 0.205 0.795 39 H 0.061 0.939 40 H 0.080 0.920 41 H 0.039 0.961 42 H 0.087 0.913 43 H 0.075 0.925 44 H 0.005 0.995 45 H 0.057 0.943 46 H 0.248 0.752 47 H 0.048 0.952 48 H -0.015 1.015 49 H 0.066 0.934 50 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.260 -7.376 5.351 24.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.327 6.327 3 C 0.006 3.994 4 C -0.052 4.052 5 C 0.019 3.981 6 N -0.353 5.353 7 C 0.360 3.640 8 O -0.488 6.488 9 C -0.277 4.277 10 C -0.071 4.071 11 N -0.126 5.126 12 H 0.279 0.721 13 C -0.134 4.134 14 C -0.162 4.162 15 C -0.135 4.135 16 C -0.147 4.147 17 C 0.012 3.988 18 N -0.332 5.332 19 C -0.393 4.393 20 H 0.087 0.913 21 C -0.247 4.247 22 N -0.584 5.584 23 Si 0.796 3.204 24 H -0.202 1.202 25 H -0.223 1.223 26 H -0.200 1.200 27 C 0.058 3.942 28 C -0.147 4.147 29 H 0.118 0.882 30 H 0.061 0.939 31 H 0.069 0.931 32 H 0.079 0.921 33 H 0.084 0.916 34 H 0.053 0.947 35 H 0.074 0.926 36 H 0.257 0.743 37 H 0.212 0.788 38 H 0.222 0.778 39 H 0.079 0.921 40 H 0.099 0.901 41 H 0.058 0.942 42 H 0.105 0.895 43 H 0.094 0.906 44 H 0.023 0.977 45 H 0.076 0.924 46 H 0.057 0.943 47 H 0.066 0.934 48 H 0.003 0.997 49 H 0.085 0.915 50 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -21.652 -7.516 5.832 23.649 hybrid contribution 0.717 0.134 -1.111 1.329 sum -20.934 -7.383 4.721 22.694 Atomic orbital electron populations 1.22898 0.79368 1.03876 1.00541 1.87501 1.21341 1.28327 1.95501 1.22540 0.90852 0.84696 1.01288 1.20695 0.94331 0.96168 0.94016 1.21161 0.96696 0.83107 0.97160 1.45955 1.50180 1.14026 1.25175 1.18044 0.79729 0.84793 0.81419 1.90675 1.40714 1.78865 1.38588 1.20460 1.10239 0.95238 1.01761 1.22155 0.98757 0.86512 0.99658 1.41473 1.39237 1.12618 1.19313 0.72124 1.21965 1.00591 1.00919 0.89960 1.20817 1.03330 0.93752 0.98298 1.20080 0.97986 1.01898 0.93511 1.21844 0.95549 0.94379 1.02950 1.21078 0.93977 0.94389 0.89354 1.44291 1.44640 1.15479 1.28741 1.19540 1.10486 0.92577 1.16743 0.91281 1.25829 0.98955 0.96677 1.03275 1.70233 1.41960 1.05596 1.40582 0.85333 0.78304 0.76740 0.80014 1.20209 1.22317 1.20047 1.20415 0.89937 0.85809 0.98068 1.21844 0.96570 0.99666 0.96586 0.88162 0.93888 0.93118 0.92081 0.91557 0.94739 0.92645 0.74263 0.78803 0.77817 0.92057 0.90106 0.94200 0.89490 0.90624 0.97693 0.92418 0.94329 0.93378 0.99676 0.91547 0.92270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 11.01 113.37 1.25 1.65 16 2 O -0.41 -8.69 6.73 -148.98 -1.00 -9.69 16 3 C 0.08 1.90 4.80 71.98 0.35 2.24 16 4 C -0.05 -1.61 0.51 -52.16 -0.03 -1.64 16 5 C 0.14 5.26 3.80 86.38 0.33 5.58 16 6 N -0.70 -23.75 4.62 -466.52 -2.15 -25.90 16 7 C 0.57 21.92 7.81 86.62 0.68 22.60 16 8 O -0.60 -28.44 15.32 -4.14 -0.06 -28.51 16 9 C -0.27 -8.13 6.29 -19.04 -0.12 -8.25 16 10 C 0.07 1.37 11.40 83.92 0.96 2.32 16 11 N -0.53 -7.29 5.90 -194.55 -1.15 -8.44 16 12 H 0.44 2.17 8.96 -92.71 -0.83 1.34 16 13 C -0.01 -0.10 11.82 83.12 0.98 0.88 16 14 C -0.16 -4.24 6.35 -18.52 -0.12 -4.36 16 15 C -0.08 -2.14 9.97 71.23 0.71 -1.42 16 16 C -0.11 -3.43 4.91 30.67 0.15 -3.28 16 17 C 0.14 5.85 6.05 86.37 0.52 6.38 16 18 N -0.61 -31.37 3.00 -699.95 -2.10 -33.47 16 19 C -0.26 -14.82 9.58 84.03 0.81 -14.02 16 20 H 0.07 3.74 7.88 -2.91 -0.02 3.72 16 21 C -0.05 -3.00 4.92 84.86 0.42 -2.59 16 22 N -0.94 -57.96 11.18 21.65 0.24 -57.71 16 23 Si 0.97 45.87 29.59 68.60 2.03 47.90 16 24 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 25 H -0.30 -14.21 7.11 99.48 0.71 -13.51 16 26 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 27 C 0.18 9.18 4.81 86.22 0.41 9.59 16 28 C -0.11 -3.99 4.57 30.53 0.14 -3.85 16 29 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.04 0.56 8.14 -2.38 -0.02 0.55 16 31 H 0.05 0.60 8.14 -2.38 -0.02 0.58 16 32 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.07 1.35 8.14 -2.38 -0.02 1.34 16 34 H 0.03 1.61 4.99 -2.38 -0.01 1.59 16 35 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 36 H 0.41 12.03 3.65 -92.71 -0.34 11.69 16 37 H 0.20 2.88 7.45 -2.91 -0.02 2.86 16 38 H 0.21 1.86 8.06 -2.91 -0.02 1.84 16 39 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 40 H 0.08 1.70 8.14 -2.38 -0.02 1.68 16 41 H 0.04 1.40 6.86 -2.39 -0.02 1.39 16 42 H 0.09 2.24 8.14 -2.38 -0.02 2.22 16 43 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 44 H 0.01 0.24 6.69 -2.39 -0.02 0.22 16 45 H 0.06 2.38 7.93 -2.39 -0.02 2.36 16 46 H 0.25 14.89 8.31 -92.71 -0.77 14.12 16 47 H 0.05 2.74 6.05 -2.39 -0.01 2.72 16 48 H -0.01 -0.84 6.70 -2.39 -0.02 -0.85 16 49 H 0.07 2.27 6.49 -2.38 -0.02 2.25 16 50 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 Total: -1.00 -82.44 385.88 3.03 -79.41 By element: Atomic # 1 Polarization: 24.80 SS G_CDS: -0.21 Total: 24.59 kcal Atomic # 6 Polarization: 4.40 SS G_CDS: 7.43 Total: 11.84 kcal Atomic # 7 Polarization: -120.37 SS G_CDS: -5.16 Total: -125.53 kcal Atomic # 8 Polarization: -37.13 SS G_CDS: -1.07 Total: -38.20 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 2.03 Total: 47.90 kcal Total: -82.44 3.03 -79.41 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162604130.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.271 kcal (2) G-P(sol) polarization free energy of solvation -82.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds