Wall clock time and date at job start Tue Mar 31 2020 19:01:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.34255 * 126.52540 * 2 1 4 4 C 1.34049 * 108.22755 * 180.22722 * 3 2 1 5 5 C 1.50698 * 125.38125 * 179.73196 * 4 3 2 6 6 C 1.53001 * 117.49848 * 8.66514 * 5 4 3 7 7 C 1.52995 * 60.00251 * 252.51363 * 6 5 4 8 8 N 1.29935 * 109.24026 * 359.77251 * 4 3 2 9 9 C 1.36065 * 108.48250 * 359.97438 * 8 4 3 10 10 C 1.47417 * 126.45061 * 179.97438 * 9 8 4 11 11 O 1.21613 * 119.99925 * 180.02562 * 10 9 8 12 12 N 1.34777 * 120.00113 * 0.03186 * 10 9 8 13 13 C 1.46498 * 119.99828 * 180.27547 * 12 10 9 14 14 H 1.09004 * 109.47372 * 34.71852 * 13 12 10 15 15 C 1.52997 * 109.47036 * 274.72131 * 13 12 10 16 16 C 1.52999 * 109.46963 * 154.72290 * 13 12 10 17 17 C 1.52997 * 109.47080 * 294.99494 * 16 13 12 18 18 C 1.53003 * 109.47411 * 180.02562 * 17 16 13 19 19 C 1.52997 * 109.47411 * 179.97438 * 18 17 16 20 20 N 1.46505 * 109.46938 * 179.97438 * 19 18 17 21 21 C 1.36935 * 119.99721 * 180.02562 * 20 19 18 22 22 H 1.08007 * 120.00287 * 359.97438 * 21 20 19 23 23 C 1.38812 * 120.00196 * 180.02562 * 21 20 19 24 24 N 1.31618 * 119.99660 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 120.00438 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.46757 * 89.99429 * 25 23 21 27 27 H 1.48497 * 109.47059 * 209.99496 * 25 23 21 28 28 H 1.48499 * 109.46945 * 329.99854 * 25 23 21 29 29 H 1.08999 * 109.46932 * 270.15941 * 1 2 3 30 30 H 1.08992 * 109.47366 * 30.16185 * 1 2 3 31 31 H 1.08999 * 109.47059 * 150.16227 * 1 2 3 32 32 H 1.08992 * 115.55269 * 154.37695 * 5 4 3 33 33 H 1.09008 * 117.49627 * 0.02562 * 6 5 4 34 34 H 1.08997 * 117.49807 * 145.01726 * 6 5 4 35 35 H 1.09009 * 117.49766 * 252.51099 * 7 6 5 36 36 H 1.09000 * 117.50580 * 107.48987 * 7 6 5 37 37 H 0.97001 * 119.99727 * 359.97438 * 12 10 9 38 38 H 1.08997 * 109.47293 * 60.00168 * 15 13 12 39 39 H 1.09003 * 109.47189 * 180.02562 * 15 13 12 40 40 H 1.09009 * 109.47238 * 300.00198 * 15 13 12 41 41 H 1.08997 * 109.47492 * 54.99915 * 16 13 12 42 42 H 1.09007 * 109.47243 * 174.99697 * 16 13 12 43 43 H 1.09002 * 109.47641 * 299.99883 * 17 16 13 44 44 H 1.08998 * 109.46968 * 60.00255 * 17 16 13 45 45 H 1.09002 * 109.46933 * 300.00830 * 18 17 16 46 46 H 1.09007 * 109.47158 * 60.00052 * 18 17 16 47 47 H 1.08997 * 109.47193 * 299.99893 * 19 18 17 48 48 H 1.08998 * 109.46968 * 60.00156 * 19 18 17 49 49 H 0.96995 * 119.99983 * 0.02562 * 20 19 18 50 50 H 0.97003 * 120.00102 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3061 1.0789 0.0000 4 6 3.5788 0.6580 -0.0050 5 6 4.7929 1.5506 -0.0126 6 6 4.5684 3.0505 0.1898 7 6 4.9541 2.5141 -1.1901 8 7 3.6001 -0.6412 -0.0033 9 6 2.3170 -1.0937 0.0036 10 6 1.8854 -2.5032 0.0072 11 8 0.7003 -2.7763 0.0129 12 7 2.8041 -3.4894 0.0042 13 6 2.3750 -4.8901 0.0016 14 1 1.4604 -4.9890 -0.5830 15 6 2.1136 -5.3460 1.4385 16 6 3.4723 -5.7584 -0.6172 17 6 3.6470 -5.3860 -2.0909 18 6 4.7438 -6.2547 -2.7100 19 6 4.9180 -5.8827 -4.1838 20 7 5.9687 -6.7141 -4.7763 21 6 6.3026 -6.5586 -6.0952 22 1 5.7911 -5.8232 -6.6987 23 6 7.2977 -7.3467 -6.6569 24 7 7.9207 -8.2431 -5.9216 25 14 7.7528 -7.1350 -8.4562 26 1 8.8316 -6.1217 -8.5780 27 1 8.2275 -8.4316 -9.0025 28 1 6.5610 -6.6832 -9.2183 29 1 -0.3633 0.0029 1.0277 30 1 -0.3634 0.8884 -0.5163 31 1 -0.3633 -0.8914 -0.5113 32 1 5.6988 1.1156 0.4094 33 1 3.5424 3.3915 0.3289 34 1 5.3266 3.6024 0.7453 35 1 5.9662 2.7133 -1.5426 36 1 4.1820 2.5023 -1.9595 37 1 3.7493 -3.2715 -0.0007 38 1 1.3319 -4.7274 1.8794 39 1 1.7948 -6.3884 1.4367 40 1 3.0283 -5.2471 2.0232 41 1 4.4099 -5.5920 -0.0868 42 1 3.1920 -6.8089 -0.5387 43 1 2.7094 -5.5525 -2.6214 44 1 3.9273 -4.3356 -2.1694 45 1 5.6815 -6.0887 -2.1796 46 1 4.4631 -7.3050 -2.6315 47 1 3.9802 -6.0491 -4.7138 48 1 5.1985 -4.8324 -4.2627 49 1 6.4278 -7.3748 -4.2345 50 1 8.6164 -8.7936 -6.3140 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001175939955.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:01:49 Heat of formation + Delta-G solvation = -2.312929 kcal Electronic energy + Delta-G solvation = -28121.808765 eV Core-core repulsion = 24151.087829 eV Total energy + Delta-G solvation = -3970.720936 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.80325 -39.89465 -37.73078 -36.97320 -35.24939 -35.17160 -33.20012 -32.58458 -31.49936 -30.24831 -27.93327 -27.40559 -24.94038 -24.12666 -23.31097 -22.94516 -22.21786 -21.57604 -20.72192 -20.56010 -20.28018 -18.10786 -17.34405 -16.97155 -16.86568 -16.38629 -15.80688 -15.11478 -15.05991 -14.86983 -14.65467 -14.32288 -13.93414 -13.81717 -13.52814 -13.42742 -13.11512 -12.99215 -12.90146 -12.88173 -12.70420 -12.31792 -12.11283 -11.91162 -11.72326 -11.43160 -11.23054 -11.16590 -11.13553 -11.08420 -10.95364 -10.77690 -10.65847 -10.38787 -10.27880 -10.21249 -9.95193 -9.62967 -9.27513 -8.94620 -8.82001 -6.86148 -5.71802 -2.99906 0.75625 1.62206 2.04851 2.90181 3.04152 3.23543 3.45907 3.46516 3.51147 3.53337 4.14565 4.29017 4.33063 4.37653 4.55349 4.63198 4.69951 4.82316 4.93582 5.03759 5.06665 5.09315 5.11854 5.26772 5.30364 5.44589 5.45212 5.48983 5.52997 5.54321 5.59192 5.64350 5.65385 5.73953 5.75099 5.84002 5.94281 6.00283 6.15470 6.27412 6.36658 6.42147 6.44080 6.52677 6.95427 6.99345 7.09427 7.42059 7.74429 7.99407 8.47754 9.58323 10.18038 10.52867 11.51430 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.009364 B = 0.002265 C = 0.001936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2989.304369 B =12359.699105 C =14462.924520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.039 3.961 3 O -0.196 6.196 4 C 0.226 3.774 5 C -0.073 4.073 6 C -0.163 4.163 7 C -0.156 4.156 8 N -0.451 5.451 9 C -0.075 4.075 10 C 0.606 3.394 11 O -0.538 6.538 12 N -0.703 5.703 13 C 0.140 3.860 14 H 0.091 0.909 15 C -0.163 4.163 16 C -0.127 4.127 17 C -0.115 4.115 18 C -0.125 4.125 19 C 0.152 3.848 20 N -0.735 5.735 21 C -0.237 4.237 22 H 0.069 0.931 23 C -0.017 4.017 24 N -0.935 5.935 25 Si 0.907 3.093 26 H -0.290 1.290 27 H -0.291 1.291 28 H -0.282 1.282 29 H 0.091 0.909 30 H 0.080 0.920 31 H 0.114 0.886 32 H 0.149 0.851 33 H 0.103 0.897 34 H 0.111 0.889 35 H 0.113 0.887 36 H 0.101 0.899 37 H 0.410 0.590 38 H 0.058 0.942 39 H 0.068 0.932 40 H 0.057 0.943 41 H 0.069 0.931 42 H 0.081 0.919 43 H 0.061 0.939 44 H 0.061 0.939 45 H 0.060 0.940 46 H 0.061 0.939 47 H 0.016 0.984 48 H 0.016 0.984 49 H 0.383 0.617 50 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.777 21.365 19.487 31.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.017 4.017 3 O -0.084 6.084 4 C 0.018 3.982 5 C -0.092 4.092 6 C -0.201 4.201 7 C -0.194 4.194 8 N -0.180 5.180 9 C -0.195 4.195 10 C 0.391 3.609 11 O -0.416 6.416 12 N -0.354 5.354 13 C 0.036 3.964 14 H 0.109 0.891 15 C -0.221 4.221 16 C -0.165 4.165 17 C -0.153 4.153 18 C -0.163 4.163 19 C 0.025 3.975 20 N -0.379 5.379 21 C -0.368 4.368 22 H 0.087 0.913 23 C -0.212 4.212 24 N -0.584 5.584 25 Si 0.738 3.262 26 H -0.217 1.217 27 H -0.218 1.218 28 H -0.208 1.208 29 H 0.110 0.890 30 H 0.099 0.901 31 H 0.132 0.868 32 H 0.167 0.833 33 H 0.121 0.879 34 H 0.129 0.871 35 H 0.132 0.868 36 H 0.119 0.881 37 H 0.245 0.755 38 H 0.077 0.923 39 H 0.086 0.914 40 H 0.076 0.924 41 H 0.088 0.912 42 H 0.099 0.901 43 H 0.080 0.920 44 H 0.079 0.921 45 H 0.079 0.921 46 H 0.079 0.921 47 H 0.034 0.966 48 H 0.034 0.966 49 H 0.217 0.783 50 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -13.085 20.813 19.315 31.264 hybrid contribution 0.500 0.329 -0.828 1.021 sum -12.585 21.142 18.487 30.775 Atomic orbital electron populations 1.20602 0.82424 1.05510 1.04640 1.23737 0.95066 0.83246 0.99638 1.84278 1.17876 1.36340 1.69883 1.24954 0.83062 0.89511 1.00697 1.20293 0.92187 0.89485 1.07248 1.23124 1.04046 0.92991 0.99890 1.23166 1.04360 1.00258 0.91609 1.70690 1.21432 1.08733 1.17131 1.21514 0.88799 0.95668 1.13533 1.16653 0.85518 0.82516 0.76189 1.90771 1.16239 1.83260 1.51308 1.45907 1.10244 1.05749 1.73467 1.21119 0.99001 0.79370 0.96869 0.89119 1.22177 1.01998 1.01681 0.96234 1.21940 0.98132 0.99804 0.96590 1.21526 0.99498 1.00136 0.94139 1.21719 0.98056 0.99488 0.97011 1.20647 0.91972 0.94197 0.90706 1.42392 1.42070 1.43762 1.09657 1.19259 1.14858 1.15784 0.86935 0.91263 1.24748 0.99369 0.98955 0.98178 1.69665 1.27886 1.25620 1.35260 0.86177 0.78206 0.76853 0.84920 1.21742 1.21759 1.20783 0.89027 0.90135 0.86809 0.83318 0.87878 0.87082 0.86828 0.88067 0.75464 0.92265 0.91352 0.92423 0.91241 0.90054 0.92011 0.92074 0.92102 0.92058 0.96595 0.96625 0.78348 0.93570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.58 9.87 36.01 0.36 -0.22 16 2 C 0.04 0.42 7.44 -35.08 -0.26 0.16 16 3 O -0.20 -2.02 10.40 6.52 0.07 -1.95 16 4 C 0.23 2.34 7.80 -13.08 -0.10 2.24 16 5 C -0.07 -0.51 6.33 -91.77 -0.58 -1.09 16 6 C -0.16 -0.79 10.16 -26.73 -0.27 -1.06 16 7 C -0.16 -0.87 10.23 -26.73 -0.27 -1.14 16 8 N -0.45 -5.50 11.06 -7.66 -0.08 -5.59 16 9 C -0.08 -0.93 6.99 -83.02 -0.58 -1.51 16 10 C 0.61 7.79 7.78 -12.52 -0.10 7.69 16 11 O -0.54 -7.68 14.47 5.27 0.08 -7.60 16 12 N -0.70 -8.02 4.53 -54.88 -0.25 -8.27 16 13 C 0.14 1.49 2.58 -67.93 -0.17 1.32 16 14 H 0.09 1.08 7.57 -51.93 -0.39 0.69 16 15 C -0.16 -1.52 9.49 37.16 0.35 -1.17 16 16 C -0.13 -1.35 4.75 -26.73 -0.13 -1.48 16 17 C -0.11 -1.53 5.10 -26.73 -0.14 -1.67 16 18 C -0.12 -2.09 5.33 -26.73 -0.14 -2.23 16 19 C 0.15 3.26 6.26 -4.04 -0.03 3.24 16 20 N -0.73 -19.67 5.60 -59.91 -0.34 -20.01 16 21 C -0.24 -6.95 9.99 -15.06 -0.15 -7.10 16 22 H 0.07 1.97 7.83 -52.48 -0.41 1.56 16 23 C -0.02 -0.50 5.50 -17.43 -0.10 -0.60 16 24 N -0.94 -29.11 13.06 55.49 0.72 -28.38 16 25 Si 0.91 23.01 29.55 -169.99 -5.02 17.99 16 26 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 27 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 28 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 29 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.11 1.01 6.49 -51.93 -0.34 0.68 16 32 H 0.15 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.10 0.53 7.94 -51.92 -0.41 0.12 16 34 H 0.11 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.11 0.47 8.14 -51.92 -0.42 0.05 16 36 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.41 4.49 8.33 -40.82 -0.34 4.15 16 38 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.06 0.51 8.14 -51.92 -0.42 0.08 16 41 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.06 0.84 7.75 -51.93 -0.40 0.44 16 45 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 46 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 47 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 48 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 49 H 0.38 10.66 7.67 -40.82 -0.31 10.34 16 50 H 0.25 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 417.75 15.07 6.30 6.30 Total: -1.00 -34.60 417.75 -9.35 -43.95 By element: Atomic # 1 Polarization: 16.70 SS G_CDS: -8.51 Total: 8.19 kcal Atomic # 6 Polarization: -2.32 SS G_CDS: -2.31 Total: -4.63 kcal Atomic # 7 Polarization: -62.30 SS G_CDS: 0.06 Total: -62.25 kcal Atomic # 8 Polarization: -9.69 SS G_CDS: 0.14 Total: -9.55 kcal Atomic # 14 Polarization: 23.01 SS G_CDS: -5.02 Total: 17.99 kcal Total LS contribution 6.30 Total: 6.30 kcal Total: -34.60 -9.35 -43.95 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175939955.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.638 kcal (2) G-P(sol) polarization free energy of solvation -34.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds