Wall clock time and date at job start Tue Mar 31 2020 19:01:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.34255 * 126.52540 * 2 1 4 4 C 1.34049 * 108.22755 * 180.22722 * 3 2 1 5 5 C 1.50698 * 125.38125 * 179.73196 * 4 3 2 6 6 C 1.53001 * 117.49848 * 8.66514 * 5 4 3 7 7 C 1.52995 * 60.00251 * 252.51363 * 6 5 4 8 8 N 1.29935 * 109.24026 * 359.77251 * 4 3 2 9 9 C 1.36065 * 108.48250 * 359.97438 * 8 4 3 10 10 C 1.47417 * 126.45061 * 179.97438 * 9 8 4 11 11 O 1.21613 * 119.99925 * 180.02562 * 10 9 8 12 12 N 1.34777 * 120.00113 * 0.03186 * 10 9 8 13 13 C 1.46498 * 119.99828 * 180.27547 * 12 10 9 14 14 H 1.09004 * 109.47372 * 34.71852 * 13 12 10 15 15 C 1.52997 * 109.47036 * 274.72131 * 13 12 10 16 16 C 1.52999 * 109.46963 * 154.72290 * 13 12 10 17 17 C 1.52997 * 109.47080 * 294.99494 * 16 13 12 18 18 C 1.53003 * 109.47411 * 180.02562 * 17 16 13 19 19 C 1.52997 * 109.47411 * 179.97438 * 18 17 16 20 20 N 1.46505 * 109.46938 * 179.97438 * 19 18 17 21 21 C 1.36935 * 119.99721 * 180.02562 * 20 19 18 22 22 H 1.08007 * 120.00287 * 359.97438 * 21 20 19 23 23 C 1.38812 * 120.00196 * 180.02562 * 21 20 19 24 24 N 1.31618 * 119.99660 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 120.00438 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.46757 * 89.99429 * 25 23 21 27 27 H 1.48497 * 109.47059 * 209.99496 * 25 23 21 28 28 H 1.48499 * 109.46945 * 329.99854 * 25 23 21 29 29 H 1.08999 * 109.46932 * 270.15941 * 1 2 3 30 30 H 1.08992 * 109.47366 * 30.16185 * 1 2 3 31 31 H 1.08999 * 109.47059 * 150.16227 * 1 2 3 32 32 H 1.08992 * 115.55269 * 154.37695 * 5 4 3 33 33 H 1.09008 * 117.49627 * 0.02562 * 6 5 4 34 34 H 1.08997 * 117.49807 * 145.01726 * 6 5 4 35 35 H 1.09009 * 117.49766 * 252.51099 * 7 6 5 36 36 H 1.09000 * 117.50580 * 107.48987 * 7 6 5 37 37 H 0.97001 * 119.99727 * 359.97438 * 12 10 9 38 38 H 1.08997 * 109.47293 * 60.00168 * 15 13 12 39 39 H 1.09003 * 109.47189 * 180.02562 * 15 13 12 40 40 H 1.09009 * 109.47238 * 300.00198 * 15 13 12 41 41 H 1.08997 * 109.47492 * 54.99915 * 16 13 12 42 42 H 1.09007 * 109.47243 * 174.99697 * 16 13 12 43 43 H 1.09002 * 109.47641 * 299.99883 * 17 16 13 44 44 H 1.08998 * 109.46968 * 60.00255 * 17 16 13 45 45 H 1.09002 * 109.46933 * 300.00830 * 18 17 16 46 46 H 1.09007 * 109.47158 * 60.00052 * 18 17 16 47 47 H 1.08997 * 109.47193 * 299.99893 * 19 18 17 48 48 H 1.08998 * 109.46968 * 60.00156 * 19 18 17 49 49 H 0.96995 * 119.99983 * 0.02562 * 20 19 18 50 50 H 0.97003 * 120.00102 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3061 1.0789 0.0000 4 6 3.5788 0.6580 -0.0050 5 6 4.7929 1.5506 -0.0126 6 6 4.5684 3.0505 0.1898 7 6 4.9541 2.5141 -1.1901 8 7 3.6001 -0.6412 -0.0033 9 6 2.3170 -1.0937 0.0036 10 6 1.8854 -2.5032 0.0072 11 8 0.7003 -2.7763 0.0129 12 7 2.8041 -3.4894 0.0042 13 6 2.3750 -4.8901 0.0016 14 1 1.4604 -4.9890 -0.5830 15 6 2.1136 -5.3460 1.4385 16 6 3.4723 -5.7584 -0.6172 17 6 3.6470 -5.3860 -2.0909 18 6 4.7438 -6.2547 -2.7100 19 6 4.9180 -5.8827 -4.1838 20 7 5.9687 -6.7141 -4.7763 21 6 6.3026 -6.5586 -6.0952 22 1 5.7911 -5.8232 -6.6987 23 6 7.2977 -7.3467 -6.6569 24 7 7.9207 -8.2431 -5.9216 25 14 7.7528 -7.1350 -8.4562 26 1 8.8316 -6.1217 -8.5780 27 1 8.2275 -8.4316 -9.0025 28 1 6.5610 -6.6832 -9.2183 29 1 -0.3633 0.0029 1.0277 30 1 -0.3634 0.8884 -0.5163 31 1 -0.3633 -0.8914 -0.5113 32 1 5.6988 1.1156 0.4094 33 1 3.5424 3.3915 0.3289 34 1 5.3266 3.6024 0.7453 35 1 5.9662 2.7133 -1.5426 36 1 4.1820 2.5023 -1.9595 37 1 3.7493 -3.2715 -0.0007 38 1 1.3319 -4.7274 1.8794 39 1 1.7948 -6.3884 1.4367 40 1 3.0283 -5.2471 2.0232 41 1 4.4099 -5.5920 -0.0868 42 1 3.1920 -6.8089 -0.5387 43 1 2.7094 -5.5525 -2.6214 44 1 3.9273 -4.3356 -2.1694 45 1 5.6815 -6.0887 -2.1796 46 1 4.4631 -7.3050 -2.6315 47 1 3.9802 -6.0491 -4.7138 48 1 5.1985 -4.8324 -4.2627 49 1 6.4278 -7.3748 -4.2345 50 1 8.6164 -8.7936 -6.3140 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001175939955.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:01:48 Heat of formation + Delta-G solvation = -25.778433 kcal Electronic energy + Delta-G solvation = -28122.826305 eV Core-core repulsion = 24151.087829 eV Total energy + Delta-G solvation = -3971.738476 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -44.60118 -40.84447 -38.25431 -38.04263 -36.86965 -36.02975 -34.79514 -33.31559 -32.98259 -31.68146 -28.85369 -28.63613 -26.05642 -25.55966 -24.14054 -23.60111 -23.32246 -22.56686 -22.06350 -21.56548 -21.10196 -19.15221 -18.93379 -18.13284 -17.56109 -17.27187 -16.71082 -16.50605 -16.29997 -15.95109 -15.62215 -15.42669 -15.28386 -15.09227 -14.77423 -14.47380 -14.22518 -14.10507 -14.01805 -13.57835 -13.29784 -13.27912 -13.04571 -12.89613 -12.87741 -12.67885 -12.47947 -12.47571 -12.30816 -12.17229 -11.95026 -11.90222 -11.85042 -11.75481 -11.58215 -11.52265 -11.42574 -11.18293 -10.95915 -10.20478 -9.73351 -9.03803 -7.98046 -5.27741 -0.06662 0.80110 1.30961 1.45175 1.47751 1.56419 2.03346 2.14102 2.54019 2.60849 2.88877 3.34962 3.48462 3.52991 3.64816 3.73073 3.92009 3.99798 4.02325 4.05904 4.11856 4.13101 4.32283 4.38253 4.40836 4.52503 4.57772 4.61929 4.72663 4.74084 4.76452 4.84288 4.86966 4.90868 4.95537 4.96672 4.99080 5.01523 5.05542 5.11373 5.16938 5.23567 5.30224 5.40168 5.43473 5.49751 5.52847 6.24065 6.24757 6.53119 7.05161 7.30271 8.06122 8.30594 9.25661 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.009364 B = 0.002265 C = 0.001936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2989.304369 B =12359.699105 C =14462.924520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.041 3.959 3 O -0.196 6.196 4 C 0.226 3.774 5 C -0.094 4.094 6 C -0.145 4.145 7 C -0.154 4.154 8 N -0.477 5.477 9 C -0.104 4.104 10 C 0.602 3.398 11 O -0.559 6.559 12 N -0.699 5.699 13 C 0.143 3.857 14 H 0.078 0.922 15 C -0.156 4.156 16 C -0.117 4.117 17 C -0.105 4.105 18 C -0.111 4.111 19 C 0.149 3.851 20 N -0.749 5.749 21 C -0.252 4.252 22 H 0.072 0.928 23 C -0.077 4.077 24 N -0.969 5.969 25 Si 0.977 3.023 26 H -0.284 1.284 27 H -0.291 1.291 28 H -0.270 1.270 29 H 0.106 0.894 30 H 0.103 0.897 31 H 0.101 0.899 32 H 0.158 0.842 33 H 0.100 0.900 34 H 0.134 0.866 35 H 0.130 0.870 36 H 0.091 0.909 37 H 0.411 0.589 38 H 0.046 0.954 39 H 0.083 0.917 40 H 0.064 0.936 41 H 0.079 0.921 42 H 0.095 0.905 43 H 0.059 0.941 44 H 0.055 0.945 45 H 0.060 0.940 46 H 0.062 0.938 47 H 0.014 0.986 48 H 0.013 0.987 49 H 0.375 0.625 50 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.867 22.718 19.817 32.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.016 4.016 3 O -0.083 6.083 4 C 0.018 3.982 5 C -0.113 4.113 6 C -0.182 4.182 7 C -0.192 4.192 8 N -0.206 5.206 9 C -0.223 4.223 10 C 0.388 3.612 11 O -0.438 6.438 12 N -0.349 5.349 13 C 0.039 3.961 14 H 0.096 0.904 15 C -0.214 4.214 16 C -0.154 4.154 17 C -0.143 4.143 18 C -0.149 4.149 19 C 0.022 3.978 20 N -0.391 5.391 21 C -0.383 4.383 22 H 0.090 0.910 23 C -0.269 4.269 24 N -0.620 5.620 25 Si 0.805 3.195 26 H -0.211 1.211 27 H -0.218 1.218 28 H -0.195 1.195 29 H 0.125 0.875 30 H 0.122 0.878 31 H 0.119 0.881 32 H 0.176 0.824 33 H 0.119 0.881 34 H 0.152 0.848 35 H 0.148 0.852 36 H 0.110 0.890 37 H 0.248 0.752 38 H 0.065 0.935 39 H 0.102 0.898 40 H 0.083 0.917 41 H 0.097 0.903 42 H 0.113 0.887 43 H 0.078 0.922 44 H 0.074 0.926 45 H 0.079 0.921 46 H 0.081 0.919 47 H 0.032 0.968 48 H 0.031 0.969 49 H 0.206 0.794 50 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -13.195 22.182 19.656 32.443 hybrid contribution 0.508 -0.024 -0.920 1.051 sum -12.687 22.158 18.736 31.670 Atomic orbital electron populations 1.20693 0.80537 1.05949 1.05692 1.24242 0.96162 0.82928 0.98253 1.84299 1.17983 1.36144 1.69903 1.25682 0.83793 0.89573 0.99200 1.20563 0.91276 0.90322 1.09143 1.23233 1.04637 0.91112 0.99223 1.23251 1.05044 0.99372 0.91534 1.70654 1.21552 1.09797 1.18553 1.21592 0.89465 0.95862 1.15431 1.16801 0.85415 0.83038 0.75949 1.90748 1.16928 1.83666 1.52501 1.45934 1.10172 1.05922 1.72905 1.21116 0.98357 0.78965 0.97654 0.90386 1.22114 1.01982 1.02277 0.95036 1.21856 0.98646 1.00487 0.94458 1.21416 0.97994 0.99077 0.95833 1.21589 0.99272 1.00121 0.93934 1.20835 0.90254 0.93202 0.93459 1.42620 1.43126 1.44249 1.09133 1.19652 1.14844 1.15633 0.88205 0.90981 1.25633 0.99573 0.98921 1.02745 1.69819 1.28479 1.26579 1.37122 0.85091 0.78138 0.76667 0.79575 1.21116 1.21775 1.19523 0.87543 0.87816 0.88101 0.82405 0.88148 0.84763 0.85190 0.89038 0.75237 0.93479 0.89805 0.91653 0.90282 0.88697 0.92195 0.92590 0.92112 0.91938 0.96757 0.96912 0.79365 0.93826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.07 9.87 71.24 0.70 -0.37 16 2 C 0.04 0.87 7.44 25.19 0.19 1.06 16 3 O -0.20 -3.94 10.40 0.41 0.00 -3.94 16 4 C 0.23 4.63 7.80 88.39 0.69 5.32 16 5 C -0.09 -1.22 6.33 -11.54 -0.07 -1.29 16 6 C -0.14 -1.12 10.16 30.59 0.31 -0.81 16 7 C -0.15 -1.50 10.23 30.59 0.31 -1.19 16 8 N -0.48 -11.79 11.06 -293.04 -3.24 -15.03 16 9 C -0.10 -2.63 6.99 40.41 0.28 -2.35 16 10 C 0.60 15.76 7.78 86.66 0.67 16.44 16 11 O -0.56 -16.26 14.47 -4.07 -0.06 -16.31 16 12 N -0.70 -15.90 4.53 -445.81 -2.02 -17.92 16 13 C 0.14 2.92 2.58 44.99 0.12 3.04 16 14 H 0.08 1.83 7.57 -2.39 -0.02 1.81 16 15 C -0.16 -2.72 9.49 71.98 0.68 -2.04 16 16 C -0.12 -2.31 4.75 30.59 0.15 -2.16 16 17 C -0.11 -2.71 5.10 30.59 0.16 -2.56 16 18 C -0.11 -3.64 5.33 30.59 0.16 -3.48 16 19 C 0.15 6.38 6.26 86.38 0.54 6.92 16 20 N -0.75 -40.40 5.60 -343.45 -1.92 -42.32 16 21 C -0.25 -14.78 9.99 84.03 0.84 -13.94 16 22 H 0.07 4.09 7.83 -2.91 -0.02 4.07 16 23 C -0.08 -4.54 5.50 84.86 0.47 -4.08 16 24 N -0.97 -60.79 13.06 21.65 0.28 -60.51 16 25 Si 0.98 47.23 29.55 68.60 2.03 49.26 16 26 H -0.28 -13.40 7.11 99.48 0.71 -12.69 16 27 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 28 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 29 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.10 1.81 6.49 -2.39 -0.02 1.79 16 32 H 0.16 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.10 0.86 7.94 -2.38 -0.02 0.84 16 34 H 0.13 0.43 8.14 -2.39 -0.02 0.41 16 35 H 0.13 0.82 8.14 -2.38 -0.02 0.80 16 36 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.41 8.99 8.33 -92.71 -0.77 8.22 16 38 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 41 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 42 H 0.09 1.68 8.14 -2.38 -0.02 1.66 16 43 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 44 H 0.06 1.51 7.75 -2.39 -0.02 1.49 16 45 H 0.06 1.99 8.14 -2.39 -0.02 1.98 16 46 H 0.06 2.04 8.14 -2.38 -0.02 2.02 16 47 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 48 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 49 H 0.37 21.13 7.67 -92.71 -0.71 20.42 16 50 H 0.25 15.24 8.31 -92.71 -0.77 14.47 16 Total: -1.00 -74.47 417.75 0.73 -73.74 By element: Atomic # 1 Polarization: 35.06 SS G_CDS: -0.54 Total: 34.52 kcal Atomic # 6 Polarization: -7.69 SS G_CDS: 6.20 Total: -1.49 kcal Atomic # 7 Polarization: -128.88 SS G_CDS: -6.90 Total: -135.77 kcal Atomic # 8 Polarization: -20.20 SS G_CDS: -0.05 Total: -20.25 kcal Atomic # 14 Polarization: 47.23 SS G_CDS: 2.03 Total: 49.26 kcal Total: -74.47 0.73 -73.74 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175939955.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.961 kcal (2) G-P(sol) polarization free energy of solvation -74.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds