Wall clock time and date at job start Tue Mar 31 2020 19:50:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 O 1.34258 * 126.52984 * 2 1 4 4 C 1.34045 * 108.22947 * 179.97438 * 3 2 1 5 5 N 1.29936 * 109.24340 * 359.72927 * 4 3 2 6 6 C 1.36063 * 108.47707 * 0.43322 * 5 4 3 7 7 C 1.47424 * 126.45045 * 179.82673 * 6 5 4 8 8 O 1.21612 * 119.99990 * 189.48811 * 7 6 5 9 9 N 1.34778 * 119.99552 * 9.76084 * 7 6 5 10 10 C 1.46494 * 119.99549 * 178.68623 * 9 7 6 11 11 C 1.53002 * 109.47583 * 89.99893 * 10 9 7 12 12 C 1.52997 * 109.47440 * 179.97438 * 11 10 9 13 13 N 1.46501 * 109.47298 * 179.97438 * 12 11 10 14 14 C 1.36933 * 120.00263 * 180.02562 * 13 12 11 15 15 H 1.08000 * 119.99797 * 0.02562 * 14 13 12 16 16 C 1.38817 * 119.99986 * 180.02562 * 14 13 12 17 17 N 1.31614 * 119.99929 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 119.99885 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.46954 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.46926 * 119.99864 * 18 16 14 21 21 H 1.48490 * 109.47398 * 240.00242 * 18 16 14 22 22 C 1.46498 * 120.00372 * 358.68341 * 9 7 6 23 23 C 1.52995 * 109.47090 * 97.43964 * 22 9 7 24 24 C 1.54267 * 110.03135 * 303.54135 * 23 22 9 25 25 C 1.54962 * 104.16208 * 217.13624 * 24 23 22 26 26 C 1.54887 * 102.77635 * 37.88788 * 25 24 23 27 27 C 1.53871 * 110.03488 * 186.32781 * 23 22 9 28 28 H 1.08998 * 109.47324 * 270.02352 * 1 2 3 29 29 H 1.09001 * 109.47183 * 30.02566 * 1 2 3 30 30 H 1.09002 * 109.47491 * 150.02498 * 1 2 3 31 31 H 1.08009 * 125.37955 * 179.97438 * 4 3 2 32 32 H 1.09000 * 109.47319 * 210.00095 * 10 9 7 33 33 H 1.09004 * 109.47235 * 329.99860 * 10 9 7 34 34 H 1.09003 * 109.46865 * 299.99906 * 11 10 9 35 35 H 1.09004 * 109.46862 * 59.99739 * 11 10 9 36 36 H 1.08991 * 109.47505 * 300.00394 * 12 11 10 37 37 H 1.09004 * 109.46959 * 60.00224 * 12 11 10 38 38 H 0.97000 * 119.99727 * 0.02562 * 13 12 11 39 39 H 0.96999 * 120.00056 * 180.02562 * 17 16 14 40 40 H 1.09002 * 109.46871 * 217.44123 * 22 9 7 41 41 H 1.09007 * 109.46844 * 337.43604 * 22 9 7 42 42 H 1.08994 * 110.02015 * 64.92986 * 23 22 9 43 43 H 1.08997 * 110.48750 * 335.78653 * 24 23 22 44 44 H 1.09000 * 110.48928 * 98.42823 * 24 23 22 45 45 H 1.09000 * 110.72210 * 279.57502 * 25 24 23 46 46 H 1.09000 * 110.92767 * 156.29550 * 25 24 23 47 47 H 1.09002 * 110.48871 * 203.40713 * 26 25 24 48 48 H 1.09005 * 110.60070 * 80.82244 * 26 25 24 49 49 H 1.09003 * 110.03100 * 238.57019 * 27 23 22 50 50 H 1.09002 * 110.03016 * 359.95017 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.3061 1.0788 0.0000 4 6 3.5787 0.6579 0.0006 5 7 3.6001 -0.6412 0.0067 6 6 2.3169 -1.0937 0.0006 7 6 1.8852 -2.5033 0.0007 8 8 0.7148 -2.7808 -0.1788 9 7 2.7867 -3.4841 0.2052 10 6 2.3530 -4.8831 0.2341 11 6 2.4195 -5.4669 -1.1786 12 6 1.9673 -6.9282 -1.1483 13 7 2.0304 -7.4871 -2.5011 14 6 1.6695 -8.7895 -2.7214 15 1 1.3379 -9.4046 -1.8979 16 6 1.7298 -9.3192 -4.0031 17 7 2.1343 -8.5696 -5.0065 18 14 1.2381 -11.0961 -4.3035 19 1 0.8243 -11.7188 -3.0204 20 1 0.1055 -11.1409 -5.2629 21 1 2.3930 -11.8410 -4.8659 22 6 4.2002 -3.1512 0.3987 23 6 4.5168 -3.1208 1.8952 24 6 3.5838 -2.1234 2.6125 25 6 4.4841 -1.4712 3.6921 26 6 5.8451 -1.3338 2.9656 27 6 5.9540 -2.6192 2.1199 28 1 -0.3634 0.0004 1.0276 29 1 -0.3633 0.8898 -0.5142 30 1 -0.3634 -0.8902 -0.5134 31 1 4.4490 1.2977 0.0003 32 1 3.0074 -5.4528 0.8938 33 1 1.3285 -4.9384 0.6022 34 1 1.7651 -4.8972 -1.8384 35 1 3.4440 -5.4116 -1.5467 36 1 2.6219 -7.4976 -0.4887 37 1 0.9428 -6.9839 -0.7801 38 1 2.3278 -6.9345 -3.2407 39 1 2.1761 -8.9396 -5.9022 40 1 4.8205 -3.9033 -0.0888 41 1 4.4059 -2.1730 -0.0363 42 1 4.3978 -4.1166 2.3221 43 1 3.2203 -1.3704 1.9133 44 1 2.7491 -2.6483 3.0771 45 1 4.5747 -2.1209 4.5626 46 1 4.0996 -0.4929 3.9805 47 1 6.6597 -1.2823 3.6881 48 1 5.8499 -0.4530 2.3235 49 1 6.5323 -3.3714 2.6565 50 1 6.4263 -2.3983 1.1626 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001177237966.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:20 Heat of formation + Delta-G solvation = -21.923409 kcal Electronic energy + Delta-G solvation = -30016.863629 eV Core-core repulsion = 26045.292319 eV Total energy + Delta-G solvation = -3971.571310 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -44.50936 -41.10809 -39.06096 -37.50197 -36.34160 -35.87662 -34.03447 -33.36502 -31.84189 -30.53890 -29.42905 -28.61393 -27.09416 -25.83571 -25.15537 -23.97196 -23.00802 -22.33121 -21.51211 -20.87400 -20.26638 -19.17101 -18.65901 -17.92319 -17.58334 -17.21009 -16.55854 -16.41689 -16.33873 -15.97989 -15.77142 -15.46050 -15.29932 -15.11155 -14.77537 -14.43871 -14.30848 -14.17680 -13.95316 -13.69359 -13.58586 -13.48509 -13.03173 -12.87769 -12.80550 -12.50183 -12.46073 -12.07873 -12.02653 -11.93236 -11.88306 -11.87361 -11.85372 -11.72327 -11.48718 -11.30786 -11.18480 -10.97963 -10.63954 -10.00807 -9.57325 -9.05145 -7.97867 -5.28308 0.07373 1.07122 1.45530 1.47603 1.57850 1.58912 1.96589 2.19700 2.54500 3.04290 3.35535 3.58172 3.66542 3.78617 3.81933 3.86727 3.88705 4.00063 4.22767 4.25293 4.34686 4.38108 4.49017 4.55360 4.56407 4.57667 4.64118 4.68129 4.69975 4.75205 4.80783 4.86784 4.90282 4.92135 4.95985 5.08704 5.12152 5.15027 5.24037 5.26412 5.30107 5.35929 5.41676 5.46203 5.54097 5.56789 5.79078 6.23946 6.27834 6.54037 7.05162 7.29342 8.03724 8.28043 9.26325 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.014380 B = 0.002665 C = 0.002404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1946.684678 B =10504.420868 C =11645.433287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.042 3.958 3 O -0.196 6.196 4 C 0.195 3.805 5 N -0.472 5.472 6 C -0.093 4.093 7 C 0.590 3.410 8 O -0.569 6.569 9 N -0.588 5.588 10 C 0.129 3.871 11 C -0.118 4.118 12 C 0.157 3.843 13 N -0.749 5.749 14 C -0.249 4.249 15 H 0.078 0.922 16 C -0.079 4.079 17 N -0.972 5.972 18 Si 0.979 3.021 19 H -0.264 1.264 20 H -0.292 1.292 21 H -0.290 1.290 22 C 0.075 3.925 23 C -0.096 4.096 24 C -0.125 4.125 25 C -0.120 4.120 26 C -0.113 4.113 27 C -0.110 4.110 28 H 0.102 0.898 29 H 0.104 0.896 30 H 0.091 0.909 31 H 0.303 0.697 32 H 0.099 0.901 33 H 0.073 0.927 34 H 0.040 0.960 35 H 0.061 0.939 36 H 0.032 0.968 37 H 0.017 0.983 38 H 0.372 0.628 39 H 0.252 0.748 40 H 0.066 0.934 41 H 0.149 0.851 42 H 0.056 0.944 43 H 0.074 0.926 44 H 0.034 0.966 45 H 0.061 0.939 46 H 0.065 0.935 47 H 0.071 0.929 48 H 0.074 0.926 49 H 0.064 0.936 50 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.419 26.062 18.823 32.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.015 4.015 3 O -0.083 6.083 4 C -0.032 4.032 5 N -0.201 5.201 6 C -0.210 4.210 7 C 0.378 3.622 8 O -0.449 6.449 9 N -0.317 5.317 10 C 0.006 3.994 11 C -0.158 4.158 12 C 0.030 3.970 13 N -0.392 5.392 14 C -0.380 4.380 15 H 0.096 0.904 16 C -0.271 4.271 17 N -0.623 5.623 18 Si 0.808 3.192 19 H -0.188 1.188 20 H -0.219 1.219 21 H -0.216 1.216 22 C -0.047 4.047 23 C -0.116 4.116 24 C -0.162 4.162 25 C -0.157 4.157 26 C -0.150 4.150 27 C -0.149 4.149 28 H 0.120 0.880 29 H 0.123 0.877 30 H 0.110 0.890 31 H 0.317 0.683 32 H 0.117 0.883 33 H 0.092 0.908 34 H 0.059 0.941 35 H 0.080 0.920 36 H 0.050 0.950 37 H 0.035 0.965 38 H 0.203 0.797 39 H 0.061 0.939 40 H 0.084 0.916 41 H 0.165 0.835 42 H 0.075 0.925 43 H 0.092 0.908 44 H 0.053 0.947 45 H 0.079 0.921 46 H 0.083 0.917 47 H 0.089 0.911 48 H 0.092 0.908 49 H 0.083 0.917 50 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 7.296 25.359 18.821 32.412 hybrid contribution -0.719 -0.779 -0.855 1.362 sum 6.577 24.580 17.965 31.148 Atomic orbital electron populations 1.20651 0.81965 1.05714 1.05345 1.23912 0.95864 0.83266 0.98449 1.84418 1.19000 1.35406 1.69477 1.29292 0.85754 0.91211 0.96960 1.70458 1.20038 1.10778 1.18815 1.21125 0.90149 0.94504 1.15231 1.17249 0.84808 0.83910 0.76186 1.90768 1.18547 1.83609 1.52021 1.47789 1.09352 1.05516 1.69005 1.21312 1.01587 0.80567 0.95966 1.21827 1.00935 0.95239 0.97752 1.20675 0.97513 0.92116 0.86693 1.42611 1.80286 1.10975 1.05295 1.19723 1.35560 0.89043 0.93694 0.90419 1.25673 1.03037 1.02835 0.95522 1.69844 1.55267 1.37446 0.99702 0.84986 0.77021 0.79328 0.77891 1.18846 1.21941 1.21648 1.22926 0.78580 1.06151 0.97023 1.21988 0.96185 0.98722 0.94660 1.22582 0.97151 0.98528 0.97961 1.22452 0.95869 1.00099 0.97321 1.22271 0.96548 0.97762 0.98421 1.22056 0.94503 0.97639 1.00660 0.87955 0.87729 0.89013 0.68252 0.88328 0.90832 0.94135 0.91986 0.95031 0.96465 0.79692 0.93907 0.91552 0.83474 0.92505 0.90804 0.94728 0.92065 0.91675 0.91064 0.90766 0.91727 0.90941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.34 9.99 71.23 0.71 -0.63 16 2 C 0.04 0.82 7.44 25.18 0.19 1.01 16 3 O -0.20 -2.81 10.73 0.42 0.00 -2.80 16 4 C 0.20 2.01 13.19 130.52 1.72 3.73 16 5 N -0.47 -8.37 6.27 -305.14 -1.91 -10.28 16 6 C -0.09 -2.19 4.82 40.41 0.19 -1.99 16 7 C 0.59 17.86 7.04 86.66 0.61 18.47 16 8 O -0.57 -20.63 14.38 -4.07 -0.06 -20.69 16 9 N -0.59 -16.43 2.21 -825.69 -1.82 -18.25 16 10 C 0.13 3.89 5.41 86.38 0.47 4.36 16 11 C -0.12 -4.40 5.65 30.59 0.17 -4.23 16 12 C 0.16 6.85 6.26 86.38 0.54 7.39 16 13 N -0.75 -41.39 5.60 -343.46 -1.92 -43.31 16 14 C -0.25 -14.71 9.99 84.04 0.84 -13.87 16 15 H 0.08 4.39 7.83 -2.91 -0.02 4.36 16 16 C -0.08 -4.73 5.50 84.86 0.47 -4.26 16 17 N -0.97 -62.12 13.06 21.65 0.28 -61.84 16 18 Si 0.98 47.75 29.55 68.60 2.03 49.77 16 19 H -0.26 -12.05 7.11 99.48 0.71 -11.34 16 20 H -0.29 -14.19 7.11 99.48 0.71 -13.48 16 21 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 22 C 0.07 1.69 4.65 86.38 0.40 2.09 16 23 C -0.10 -1.83 3.22 -10.07 -0.03 -1.86 16 24 C -0.12 -2.42 5.53 31.69 0.18 -2.24 16 25 C -0.12 -1.76 6.91 31.91 0.22 -1.54 16 26 C -0.11 -1.35 6.83 31.67 0.22 -1.13 16 27 C -0.11 -1.61 6.46 31.32 0.20 -1.41 16 28 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.09 2.05 6.33 -2.39 -0.02 2.04 16 31 H 0.30 -0.57 8.06 -2.91 -0.02 -0.59 16 32 H 0.10 2.54 8.07 -2.39 -0.02 2.52 16 33 H 0.07 2.39 7.43 -2.38 -0.02 2.37 16 34 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.06 2.28 8.14 -2.38 -0.02 2.26 16 36 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.02 0.77 8.14 -2.38 -0.02 0.75 16 38 H 0.37 21.88 7.67 -92.71 -0.71 21.16 16 39 H 0.25 15.46 8.31 -92.71 -0.77 14.68 16 40 H 0.07 1.52 8.12 -2.39 -0.02 1.50 16 41 H 0.15 3.20 4.21 -23.95 -0.10 3.10 16 42 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 43 H 0.07 1.51 3.50 -2.39 -0.01 1.50 16 44 H 0.03 0.78 8.14 -2.39 -0.02 0.76 16 45 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 46 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 47 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 48 H 0.07 0.75 8.14 -2.38 -0.02 0.73 16 49 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 50 H 0.07 1.00 7.67 -2.39 -0.02 0.98 16 Total: -1.00 -77.22 395.07 3.83 -73.38 By element: Atomic # 1 Polarization: 29.99 SS G_CDS: 0.14 Total: 30.13 kcal Atomic # 6 Polarization: -3.21 SS G_CDS: 7.10 Total: 3.89 kcal Atomic # 7 Polarization: -128.31 SS G_CDS: -5.38 Total: -133.69 kcal Atomic # 8 Polarization: -23.44 SS G_CDS: -0.05 Total: -23.49 kcal Atomic # 14 Polarization: 47.75 SS G_CDS: 2.03 Total: 49.77 kcal Total: -77.22 3.83 -73.38 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177237966.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.460 kcal (2) G-P(sol) polarization free energy of solvation -77.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds