Wall clock time and date at job start Tue Mar 31 2020 20:00:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.33695 * 126.27359 * 2 1 4 4 C 1.30624 * 108.99373 * 180.17313 * 3 2 1 5 5 C 1.50697 * 125.42390 * 179.83526 * 4 3 2 6 6 C 1.53000 * 117.49504 * 351.07389 * 5 4 3 7 7 C 1.52997 * 60.00347 * 107.48912 * 6 5 4 8 8 O 1.33671 * 109.15407 * 359.57076 * 4 3 2 9 9 C 1.35343 * 107.68284 * 0.26427 * 8 4 3 10 10 C 1.46720 * 126.64208 * 180.02562 * 9 8 4 11 11 O 1.21684 * 120.00288 * 179.97438 * 10 9 8 12 12 N 1.34778 * 120.00126 * 359.97438 * 10 9 8 13 13 C 1.46496 * 119.99971 * 179.97438 * 12 10 9 14 14 C 1.53011 * 109.46820 * 179.97438 * 13 12 10 15 15 C 1.52999 * 109.46758 * 179.97438 * 14 13 12 16 16 C 1.52997 * 109.46840 * 179.97438 * 15 14 13 17 17 C 1.53008 * 109.47378 * 180.02562 * 16 15 14 18 18 C 1.52997 * 109.47378 * 180.02562 * 17 16 15 19 19 N 1.46503 * 109.47085 * 179.97438 * 18 17 16 20 20 C 1.36933 * 119.99684 * 179.97438 * 19 18 17 21 21 H 1.07998 * 120.00585 * 0.02562 * 20 19 18 22 22 C 1.38817 * 119.99660 * 180.02562 * 20 19 18 23 23 N 1.31616 * 120.00128 * 0.02562 * 22 20 19 24 24 Si 1.86805 * 119.99715 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47090 * 90.00267 * 24 22 20 26 26 H 1.48501 * 109.46925 * 209.99937 * 24 22 20 27 27 H 1.48500 * 109.47037 * 330.00039 * 24 22 20 28 28 H 1.09007 * 109.46563 * 270.29769 * 1 2 3 29 29 H 1.09001 * 109.47157 * 30.29440 * 1 2 3 30 30 H 1.09000 * 109.47386 * 150.29862 * 1 2 3 31 31 H 1.08990 * 115.56356 * 205.38561 * 5 4 3 32 32 H 1.09002 * 117.49696 * 214.98125 * 6 5 4 33 33 H 1.09002 * 117.50343 * 0.02562 * 6 5 4 34 34 H 1.08999 * 117.49685 * 252.51237 * 7 6 5 35 35 H 1.08997 * 117.50044 * 107.48590 * 7 6 5 36 36 H 0.97003 * 119.99575 * 359.97438 * 12 10 9 37 37 H 1.09000 * 109.47349 * 299.99133 * 13 12 10 38 38 H 1.08994 * 109.47557 * 60.00187 * 13 12 10 39 39 H 1.08996 * 109.47121 * 299.99749 * 14 13 12 40 40 H 1.08999 * 109.46973 * 60.00304 * 14 13 12 41 41 H 1.08996 * 109.47328 * 299.99902 * 15 14 13 42 42 H 1.09003 * 109.47067 * 60.00052 * 15 14 13 43 43 H 1.09003 * 109.47440 * 300.00390 * 16 15 14 44 44 H 1.09003 * 109.47134 * 60.00232 * 16 15 14 45 45 H 1.08996 * 109.46920 * 300.00122 * 17 16 15 46 46 H 1.09003 * 109.46936 * 59.99942 * 17 16 15 47 47 H 1.09003 * 109.47440 * 300.00221 * 18 17 16 48 48 H 1.09003 * 109.47134 * 60.00063 * 18 17 16 49 49 H 0.96992 * 119.99494 * 0.02562 * 19 18 17 50 50 H 0.96996 * 120.00255 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2979 1.0778 0.0000 4 6 3.5452 0.6898 -0.0037 5 6 4.7440 1.6030 -0.0086 6 6 4.4928 3.0974 -0.2197 7 6 4.8948 2.5770 1.1617 8 8 3.5890 -0.6461 0.0032 9 6 2.3136 -1.0992 0.0057 10 6 1.8826 -2.5016 0.0135 11 8 0.6966 -2.7737 0.0154 12 7 2.8003 -3.4887 0.0187 13 6 2.3699 -4.8890 0.0271 14 6 3.5991 -5.8003 0.0309 15 6 3.1496 -7.2627 0.0403 16 6 4.3786 -8.1739 0.0435 17 6 3.9292 -9.6365 0.0523 18 6 5.1582 -10.5477 0.0562 19 7 4.7278 -11.9481 0.0652 20 6 5.6603 -12.9508 0.0695 21 1 6.7129 -12.7095 0.0666 22 6 5.2525 -14.2777 0.0775 23 7 3.9696 -14.5720 0.0805 24 14 6.5246 -15.6457 0.0840 25 1 6.8630 -16.0002 1.4858 26 1 5.9729 -16.8379 -0.6086 27 1 7.7488 -15.1866 -0.6199 28 1 -0.3633 0.0053 1.0278 29 1 -0.3633 0.8873 -0.5184 30 1 -0.3634 -0.8926 -0.5092 31 1 5.6550 1.1809 -0.4327 32 1 5.2387 3.6584 -0.7829 33 1 3.4605 3.4201 -0.3548 34 1 4.1270 2.5573 1.9351 35 1 5.9051 2.7957 1.5075 36 1 3.7458 -3.2718 0.0168 37 1 1.7727 -5.0802 0.9186 38 1 1.7715 -5.0906 -0.8613 39 1 4.1960 -5.6090 -0.8608 40 1 4.1979 -5.5989 0.9191 41 1 2.5529 -7.4537 0.9323 42 1 2.5504 -7.4644 -0.8477 43 1 4.9750 -7.9828 -0.8486 44 1 4.9780 -7.9723 0.9313 45 1 3.3326 -9.8279 0.9443 46 1 3.3299 -9.8378 -0.8357 47 1 5.7552 -10.3564 -0.8355 48 1 5.7570 -10.3463 0.9444 49 1 3.7824 -12.1648 0.0674 50 1 3.6847 -15.4991 0.0857 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001179773459.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:00:44 Heat of formation + Delta-G solvation = -4.746929 kcal Electronic energy + Delta-G solvation = -26704.533847 eV Core-core repulsion = 22733.707365 eV Total energy + Delta-G solvation = -3970.826482 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -43.95787 -39.98227 -37.94902 -36.95246 -35.91631 -35.33587 -33.99066 -32.15823 -31.71146 -30.10413 -28.51152 -26.98618 -25.51261 -24.08288 -23.11699 -22.60494 -22.00426 -21.51507 -21.24445 -20.71666 -20.66652 -18.56014 -17.52705 -17.13062 -16.96982 -16.45821 -16.26572 -15.47058 -15.30358 -15.23067 -14.72526 -14.49272 -14.28375 -13.71377 -13.65102 -13.48345 -13.40084 -13.07053 -12.99972 -12.74893 -12.55644 -12.38217 -12.23767 -11.94793 -11.76957 -11.44428 -11.40162 -11.25636 -11.20710 -11.18068 -10.93487 -10.75089 -10.73921 -10.58695 -10.36685 -10.26671 -9.96344 -9.65114 -9.63855 -9.15243 -8.84031 -6.88382 -5.73619 -3.02027 0.28673 1.77241 1.81198 2.63096 2.65201 3.09100 3.32804 3.45184 3.49842 3.51953 3.98795 4.09866 4.19524 4.25896 4.40971 4.49971 4.63467 4.70029 4.84180 4.91789 4.97906 5.03250 5.12823 5.19261 5.24811 5.30823 5.32197 5.36073 5.41099 5.46336 5.50106 5.53942 5.61925 5.65111 5.68038 5.83423 5.90866 5.93661 5.98378 6.11861 6.32877 6.33682 6.41557 6.48504 6.85179 6.91967 6.95998 7.12889 7.58279 7.72303 8.45750 9.56413 10.16055 10.50628 11.49539 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.024817 B = 0.001270 C = 0.001214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.977988 B =22036.657076 C =23049.268657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.087 3.913 3 N -0.487 5.487 4 C 0.256 3.744 5 C -0.091 4.091 6 C -0.143 4.143 7 C -0.151 4.151 8 O -0.186 6.186 9 C -0.124 4.124 10 C 0.609 3.391 11 O -0.512 6.512 12 N -0.718 5.718 13 C 0.117 3.883 14 C -0.132 4.132 15 C -0.116 4.116 16 C -0.113 4.113 17 C -0.127 4.127 18 C 0.152 3.848 19 N -0.735 5.735 20 C -0.240 4.240 21 H 0.070 0.930 22 C -0.015 4.015 23 N -0.935 5.935 24 Si 0.907 3.093 25 H -0.290 1.290 26 H -0.291 1.291 27 H -0.282 1.282 28 H 0.083 0.917 29 H 0.078 0.922 30 H 0.096 0.904 31 H 0.138 0.862 32 H 0.110 0.890 33 H 0.112 0.888 34 H 0.103 0.897 35 H 0.111 0.889 36 H 0.405 0.595 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.070 0.930 40 H 0.070 0.930 41 H 0.066 0.934 42 H 0.066 0.934 43 H 0.060 0.940 44 H 0.060 0.940 45 H 0.061 0.939 46 H 0.061 0.939 47 H 0.016 0.984 48 H 0.016 0.984 49 H 0.383 0.617 50 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.348 39.728 0.116 39.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.037 4.037 3 N -0.217 5.217 4 C 0.051 3.949 5 C -0.110 4.110 6 C -0.180 4.180 7 C -0.189 4.189 8 O -0.073 6.073 9 C -0.178 4.178 10 C 0.395 3.605 11 O -0.390 6.390 12 N -0.368 5.368 13 C -0.006 4.006 14 C -0.170 4.170 15 C -0.154 4.154 16 C -0.152 4.152 17 C -0.165 4.165 18 C 0.024 3.976 19 N -0.379 5.379 20 C -0.371 4.371 21 H 0.088 0.912 22 C -0.211 4.211 23 N -0.583 5.583 24 Si 0.738 3.262 25 H -0.217 1.217 26 H -0.217 1.217 27 H -0.208 1.208 28 H 0.102 0.898 29 H 0.097 0.903 30 H 0.115 0.885 31 H 0.156 0.844 32 H 0.129 0.871 33 H 0.131 0.869 34 H 0.121 0.879 35 H 0.130 0.870 36 H 0.240 0.760 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.085 0.915 42 H 0.085 0.915 43 H 0.079 0.921 44 H 0.079 0.921 45 H 0.079 0.921 46 H 0.079 0.921 47 H 0.034 0.966 48 H 0.034 0.966 49 H 0.217 0.783 50 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -2.177 39.979 0.108 40.038 hybrid contribution 1.190 -1.598 -0.001 1.992 sum -0.987 38.381 0.107 38.394 Atomic orbital electron populations 1.20420 0.85071 1.04543 1.03873 1.22096 0.98399 0.86263 0.96946 1.70290 1.00136 1.31044 1.20199 1.25337 0.94291 0.78923 0.96318 1.20219 0.93057 0.89452 1.08242 1.23137 1.04593 0.91323 0.98963 1.23167 1.04090 0.99744 0.91912 1.84405 1.29732 1.23453 1.69684 1.22880 0.81217 0.96283 1.17465 1.16273 0.85798 0.81274 0.77193 1.90880 1.15658 1.81835 1.50585 1.45951 1.09871 1.06644 1.74363 1.21575 0.97757 0.78170 1.03103 1.21844 0.96807 0.95360 1.02943 1.21515 0.98743 0.92402 1.02730 1.21502 0.96970 0.94757 1.01927 1.21729 0.99167 0.93538 1.02018 1.20658 0.94117 0.85267 0.97525 1.42392 1.06582 0.99478 1.89462 1.19262 0.89126 0.86226 1.42470 0.91225 1.24748 0.96031 0.97195 1.03144 1.69661 1.13045 1.17688 1.57949 0.86181 0.80448 0.82014 0.77517 1.21727 1.21744 1.20780 0.89833 0.90332 0.88506 0.84390 0.87133 0.86921 0.87860 0.87035 0.75998 0.90771 0.90775 0.91152 0.91159 0.91523 0.91528 0.92084 0.92082 0.92070 0.92065 0.96596 0.96600 0.78334 0.93540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.67 9.87 36.00 0.36 -0.32 16 2 C 0.09 0.89 7.16 -82.47 -0.59 0.29 16 3 N -0.49 -4.77 10.79 -7.07 -0.08 -4.85 16 4 C 0.26 2.15 7.86 -12.79 -0.10 2.05 16 5 C -0.09 -0.43 6.33 -91.77 -0.58 -1.02 16 6 C -0.14 -0.51 10.13 -26.73 -0.27 -0.78 16 7 C -0.15 -0.52 10.23 -26.73 -0.27 -0.79 16 8 O -0.19 -1.70 10.57 4.41 0.05 -1.65 16 9 C -0.12 -1.26 7.18 -36.84 -0.26 -1.53 16 10 C 0.61 6.47 7.79 -12.83 -0.10 6.37 16 11 O -0.51 -6.61 14.79 5.20 0.08 -6.53 16 12 N -0.72 -6.05 5.55 -61.60 -0.34 -6.39 16 13 C 0.12 0.98 5.67 -4.04 -0.02 0.96 16 14 C -0.13 -1.02 5.33 -26.73 -0.14 -1.16 16 15 C -0.12 -1.13 5.21 -26.73 -0.14 -1.27 16 16 C -0.11 -1.37 5.21 -26.73 -0.14 -1.51 16 17 C -0.13 -2.05 5.33 -26.73 -0.14 -2.19 16 18 C 0.15 3.15 6.26 -4.04 -0.03 3.12 16 19 N -0.74 -19.40 5.60 -59.91 -0.34 -19.74 16 20 C -0.24 -6.93 9.99 -15.06 -0.15 -7.08 16 21 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 22 C -0.02 -0.46 5.50 -17.43 -0.10 -0.55 16 23 N -0.93 -28.89 13.06 55.49 0.72 -28.17 16 24 Si 0.91 22.76 29.55 -169.99 -5.02 17.74 16 25 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 26 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 27 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 28 H 0.08 0.62 8.14 -51.92 -0.42 0.20 16 29 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.10 0.87 6.47 -51.93 -0.34 0.53 16 31 H 0.14 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.11 0.18 8.14 -51.93 -0.42 -0.24 16 33 H 0.11 0.55 7.87 -51.93 -0.41 0.14 16 34 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.11 0.18 8.14 -51.93 -0.42 -0.25 16 36 H 0.41 2.67 8.27 -40.82 -0.34 2.33 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 42 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 43 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 44 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 45 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 46 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 47 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 48 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 49 H 0.38 10.56 7.67 -40.82 -0.31 10.25 16 50 H 0.25 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 419.29 15.07 6.32 6.32 Total: -1.00 -34.44 419.29 -9.85 -44.29 By element: Atomic # 1 Polarization: 12.95 SS G_CDS: -8.55 Total: 4.40 kcal Atomic # 6 Polarization: -2.73 SS G_CDS: -2.68 Total: -5.41 kcal Atomic # 7 Polarization: -59.12 SS G_CDS: -0.03 Total: -59.15 kcal Atomic # 8 Polarization: -8.31 SS G_CDS: 0.12 Total: -8.18 kcal Atomic # 14 Polarization: 22.76 SS G_CDS: -5.02 Total: 17.74 kcal Total LS contribution 6.32 Total: 6.32 kcal Total: -34.44 -9.85 -44.29 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001179773459.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.542 kcal (2) G-P(sol) polarization free energy of solvation -34.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds