Wall clock time and date at job start Tue Mar 31 2020 20:00:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.33695 * 126.27359 * 2 1 4 4 C 1.30624 * 108.99373 * 180.17313 * 3 2 1 5 5 C 1.50697 * 125.42390 * 179.83526 * 4 3 2 6 6 C 1.53000 * 117.49504 * 351.07389 * 5 4 3 7 7 C 1.52997 * 60.00347 * 107.48912 * 6 5 4 8 8 O 1.33671 * 109.15407 * 359.57076 * 4 3 2 9 9 C 1.35343 * 107.68284 * 0.26427 * 8 4 3 10 10 C 1.46720 * 126.64208 * 180.02562 * 9 8 4 11 11 O 1.21684 * 120.00288 * 179.97438 * 10 9 8 12 12 N 1.34778 * 120.00126 * 359.97438 * 10 9 8 13 13 C 1.46496 * 119.99971 * 179.97438 * 12 10 9 14 14 C 1.53011 * 109.46820 * 179.97438 * 13 12 10 15 15 C 1.52999 * 109.46758 * 179.97438 * 14 13 12 16 16 C 1.52997 * 109.46840 * 179.97438 * 15 14 13 17 17 C 1.53008 * 109.47378 * 180.02562 * 16 15 14 18 18 C 1.52997 * 109.47378 * 180.02562 * 17 16 15 19 19 N 1.46503 * 109.47085 * 179.97438 * 18 17 16 20 20 C 1.36933 * 119.99684 * 179.97438 * 19 18 17 21 21 H 1.07998 * 120.00585 * 0.02562 * 20 19 18 22 22 C 1.38817 * 119.99660 * 180.02562 * 20 19 18 23 23 N 1.31616 * 120.00128 * 0.02562 * 22 20 19 24 24 Si 1.86805 * 119.99715 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47090 * 90.00267 * 24 22 20 26 26 H 1.48501 * 109.46925 * 209.99937 * 24 22 20 27 27 H 1.48500 * 109.47037 * 330.00039 * 24 22 20 28 28 H 1.09007 * 109.46563 * 270.29769 * 1 2 3 29 29 H 1.09001 * 109.47157 * 30.29440 * 1 2 3 30 30 H 1.09000 * 109.47386 * 150.29862 * 1 2 3 31 31 H 1.08990 * 115.56356 * 205.38561 * 5 4 3 32 32 H 1.09002 * 117.49696 * 214.98125 * 6 5 4 33 33 H 1.09002 * 117.50343 * 0.02562 * 6 5 4 34 34 H 1.08999 * 117.49685 * 252.51237 * 7 6 5 35 35 H 1.08997 * 117.50044 * 107.48590 * 7 6 5 36 36 H 0.97003 * 119.99575 * 359.97438 * 12 10 9 37 37 H 1.09000 * 109.47349 * 299.99133 * 13 12 10 38 38 H 1.08994 * 109.47557 * 60.00187 * 13 12 10 39 39 H 1.08996 * 109.47121 * 299.99749 * 14 13 12 40 40 H 1.08999 * 109.46973 * 60.00304 * 14 13 12 41 41 H 1.08996 * 109.47328 * 299.99902 * 15 14 13 42 42 H 1.09003 * 109.47067 * 60.00052 * 15 14 13 43 43 H 1.09003 * 109.47440 * 300.00390 * 16 15 14 44 44 H 1.09003 * 109.47134 * 60.00232 * 16 15 14 45 45 H 1.08996 * 109.46920 * 300.00122 * 17 16 15 46 46 H 1.09003 * 109.46936 * 59.99942 * 17 16 15 47 47 H 1.09003 * 109.47440 * 300.00221 * 18 17 16 48 48 H 1.09003 * 109.47134 * 60.00063 * 18 17 16 49 49 H 0.96992 * 119.99494 * 0.02562 * 19 18 17 50 50 H 0.96996 * 120.00255 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2979 1.0778 0.0000 4 6 3.5452 0.6898 -0.0037 5 6 4.7440 1.6030 -0.0086 6 6 4.4928 3.0974 -0.2197 7 6 4.8948 2.5770 1.1617 8 8 3.5890 -0.6461 0.0032 9 6 2.3136 -1.0992 0.0057 10 6 1.8826 -2.5016 0.0135 11 8 0.6966 -2.7737 0.0154 12 7 2.8003 -3.4887 0.0187 13 6 2.3699 -4.8890 0.0271 14 6 3.5991 -5.8003 0.0309 15 6 3.1496 -7.2627 0.0403 16 6 4.3786 -8.1739 0.0435 17 6 3.9292 -9.6365 0.0523 18 6 5.1582 -10.5477 0.0562 19 7 4.7278 -11.9481 0.0652 20 6 5.6603 -12.9508 0.0695 21 1 6.7129 -12.7095 0.0666 22 6 5.2525 -14.2777 0.0775 23 7 3.9696 -14.5720 0.0805 24 14 6.5246 -15.6457 0.0840 25 1 6.8630 -16.0002 1.4858 26 1 5.9729 -16.8379 -0.6086 27 1 7.7488 -15.1866 -0.6199 28 1 -0.3633 0.0053 1.0278 29 1 -0.3633 0.8873 -0.5184 30 1 -0.3634 -0.8926 -0.5092 31 1 5.6550 1.1809 -0.4327 32 1 5.2387 3.6584 -0.7829 33 1 3.4605 3.4201 -0.3548 34 1 4.1270 2.5573 1.9351 35 1 5.9051 2.7957 1.5075 36 1 3.7458 -3.2718 0.0168 37 1 1.7727 -5.0802 0.9186 38 1 1.7715 -5.0906 -0.8613 39 1 4.1960 -5.6090 -0.8608 40 1 4.1979 -5.5989 0.9191 41 1 2.5529 -7.4537 0.9323 42 1 2.5504 -7.4644 -0.8477 43 1 4.9750 -7.9828 -0.8486 44 1 4.9780 -7.9723 0.9313 45 1 3.3326 -9.8279 0.9443 46 1 3.3299 -9.8378 -0.8357 47 1 5.7552 -10.3564 -0.8355 48 1 5.7570 -10.3463 0.9444 49 1 3.7824 -12.1648 0.0674 50 1 3.6847 -15.4991 0.0857 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001179773459.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:00:43 Heat of formation + Delta-G solvation = -28.302918 kcal Electronic energy + Delta-G solvation = -26705.555312 eV Core-core repulsion = 22733.707365 eV Total energy + Delta-G solvation = -3971.847946 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -44.63666 -40.77577 -38.28727 -37.96221 -36.96463 -36.36315 -35.33664 -33.58076 -32.59480 -31.55472 -29.36823 -28.13297 -26.34500 -25.50810 -23.88878 -23.37166 -22.82102 -22.33602 -22.01816 -21.85229 -21.47968 -19.31871 -19.08614 -18.19976 -17.62247 -17.24241 -17.06228 -16.66581 -16.27085 -15.98738 -15.70162 -15.42494 -15.35009 -15.30125 -15.09787 -14.37010 -14.29045 -14.09355 -13.91659 -13.58108 -13.45776 -13.12053 -13.04432 -12.96336 -12.67644 -12.55234 -12.43060 -12.41500 -12.18310 -12.10707 -12.00890 -11.83597 -11.80270 -11.69238 -11.59273 -11.52756 -11.34960 -11.23394 -10.93866 -10.40453 -9.82151 -9.01945 -7.96816 -5.26417 -0.42436 1.11893 1.13776 1.46450 1.48939 1.57524 1.84626 1.96423 2.55361 2.64357 2.87311 3.36702 3.49185 3.52491 3.68437 3.73646 3.92754 3.95456 3.99899 4.04323 4.23375 4.25811 4.27917 4.32365 4.37099 4.58382 4.61241 4.61859 4.70237 4.76146 4.76504 4.81626 4.82290 4.91934 4.95398 4.96111 5.05075 5.05667 5.12197 5.18083 5.22847 5.25997 5.27530 5.37132 5.47232 5.53272 5.56283 6.15532 6.25913 6.44189 6.84366 7.31365 8.08523 8.31450 9.27040 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.024817 B = 0.001270 C = 0.001214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.977988 B =22036.657076 C =23049.268657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.077 3.923 3 N -0.507 5.507 4 C 0.260 3.740 5 C -0.106 4.106 6 C -0.137 4.137 7 C -0.142 4.142 8 O -0.186 6.186 9 C -0.141 4.141 10 C 0.608 3.392 11 O -0.542 6.542 12 N -0.706 5.706 13 C 0.119 3.881 14 C -0.119 4.119 15 C -0.112 4.112 16 C -0.104 4.104 17 C -0.117 4.117 18 C 0.147 3.853 19 N -0.751 5.751 20 C -0.252 4.252 21 H 0.076 0.924 22 C -0.077 4.077 23 N -0.971 5.971 24 Si 0.977 3.023 25 H -0.285 1.285 26 H -0.293 1.293 27 H -0.268 1.268 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.087 0.913 31 H 0.161 0.839 32 H 0.135 0.865 33 H 0.096 0.904 34 H 0.089 0.911 35 H 0.136 0.864 36 H 0.416 0.584 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.081 0.919 40 H 0.080 0.920 41 H 0.065 0.935 42 H 0.065 0.935 43 H 0.068 0.932 44 H 0.068 0.932 45 H 0.054 0.946 46 H 0.055 0.945 47 H 0.019 0.981 48 H 0.019 0.981 49 H 0.373 0.627 50 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.808 41.295 0.114 41.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.048 4.048 3 N -0.237 5.237 4 C 0.056 3.944 5 C -0.125 4.125 6 C -0.174 4.174 7 C -0.180 4.180 8 O -0.074 6.074 9 C -0.196 4.196 10 C 0.394 3.606 11 O -0.422 6.422 12 N -0.357 5.357 13 C -0.003 4.003 14 C -0.157 4.157 15 C -0.150 4.150 16 C -0.142 4.142 17 C -0.155 4.155 18 C 0.021 3.979 19 N -0.394 5.394 20 C -0.383 4.383 21 H 0.094 0.906 22 C -0.269 4.269 23 N -0.622 5.622 24 Si 0.805 3.195 25 H -0.212 1.212 26 H -0.220 1.220 27 H -0.193 1.193 28 H 0.108 0.892 29 H 0.108 0.892 30 H 0.105 0.895 31 H 0.178 0.822 32 H 0.153 0.847 33 H 0.114 0.886 34 H 0.108 0.892 35 H 0.154 0.846 36 H 0.252 0.748 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.099 0.901 40 H 0.099 0.901 41 H 0.084 0.916 42 H 0.084 0.916 43 H 0.087 0.913 44 H 0.087 0.913 45 H 0.073 0.927 46 H 0.073 0.927 47 H 0.037 0.963 48 H 0.037 0.963 49 H 0.204 0.796 50 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 0.027 41.587 0.108 41.587 hybrid contribution 0.555 -1.977 0.008 2.053 sum 0.582 39.610 0.115 39.615 Atomic orbital electron populations 1.20421 0.84288 1.04580 1.04282 1.22444 0.99237 0.86545 0.96524 1.70320 1.00844 1.31087 1.21464 1.26202 0.95046 0.78971 0.94218 1.20603 0.92476 0.89502 1.09871 1.23215 1.04447 0.90395 0.99382 1.23254 1.05033 0.98371 0.91331 1.84397 1.29157 1.23892 1.69928 1.22788 0.81729 0.96169 1.18896 1.16352 0.85633 0.81732 0.76910 1.90858 1.16828 1.82345 1.52191 1.45864 1.10172 1.06298 1.73332 1.21526 0.98040 0.78199 1.02568 1.21710 0.96448 0.93538 1.04006 1.21440 0.97665 0.93214 1.02714 1.21422 0.98033 0.92088 1.02692 1.21638 0.97018 0.95359 1.01450 1.20884 0.96177 0.83388 0.97431 1.42663 1.05796 1.01441 1.89473 1.19698 0.89900 0.87234 1.41510 0.90630 1.25633 0.98064 0.99698 1.03498 1.69824 1.15054 1.17875 1.59425 0.85090 0.78284 0.78530 0.77558 1.21217 1.21985 1.19310 0.89203 0.89162 0.89468 0.82167 0.84674 0.88578 0.89227 0.84551 0.74785 0.91382 0.91379 0.90082 0.90094 0.91643 0.91648 0.91313 0.91310 0.92672 0.92661 0.96328 0.96321 0.79569 0.93923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.33 9.87 71.23 0.70 -0.63 16 2 C 0.08 1.58 7.16 41.83 0.30 1.88 16 3 N -0.51 -9.91 10.79 -291.05 -3.14 -13.05 16 4 C 0.26 4.18 7.86 88.29 0.69 4.88 16 5 C -0.11 -0.82 6.33 -11.54 -0.07 -0.89 16 6 C -0.14 -0.72 10.13 30.59 0.31 -0.41 16 7 C -0.14 -0.69 10.23 30.60 0.31 -0.38 16 8 O -0.19 -3.29 10.57 -7.14 -0.08 -3.37 16 9 C -0.14 -2.89 7.18 24.05 0.17 -2.72 16 10 C 0.61 12.94 7.79 86.46 0.67 13.62 16 11 O -0.54 -14.35 14.79 -4.30 -0.06 -14.41 16 12 N -0.71 -11.28 5.55 -467.04 -2.59 -13.87 16 13 C 0.12 1.88 5.67 86.38 0.49 2.37 16 14 C -0.12 -1.58 5.33 30.60 0.16 -1.42 16 15 C -0.11 -1.99 5.21 30.59 0.16 -1.83 16 16 C -0.10 -2.31 5.21 30.60 0.16 -2.15 16 17 C -0.12 -3.68 5.33 30.60 0.16 -3.52 16 18 C 0.15 6.02 6.26 86.38 0.54 6.56 16 19 N -0.75 -39.88 5.60 -343.44 -1.92 -41.80 16 20 C -0.25 -14.54 9.99 84.04 0.84 -13.70 16 21 H 0.08 4.17 7.83 -2.91 -0.02 4.15 16 22 C -0.08 -4.52 5.50 84.86 0.47 -4.05 16 23 N -0.97 -60.75 13.06 21.65 0.28 -60.47 16 24 Si 0.98 46.70 29.55 68.60 2.03 48.73 16 25 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 26 H -0.29 -14.02 7.11 99.48 0.71 -13.32 16 27 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 28 H 0.09 1.36 8.14 -2.38 -0.02 1.35 16 29 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.09 1.65 6.47 -2.39 -0.02 1.63 16 31 H 0.16 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.14 0.04 8.14 -2.39 -0.02 0.02 16 33 H 0.10 0.86 7.87 -2.39 -0.02 0.84 16 34 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.14 0.00 8.14 -2.39 -0.02 -0.02 16 36 H 0.42 4.86 8.27 -92.71 -0.77 4.09 16 37 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 40 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 41 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 42 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 43 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 44 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 45 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 46 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 47 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 48 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 49 H 0.37 20.95 7.67 -92.71 -0.71 20.24 16 50 H 0.25 15.19 8.31 -92.71 -0.77 14.42 16 Total: -1.00 -74.48 419.29 0.05 -74.42 By element: Atomic # 1 Polarization: 26.76 SS G_CDS: -0.53 Total: 26.22 kcal Atomic # 6 Polarization: -8.47 SS G_CDS: 6.08 Total: -2.40 kcal Atomic # 7 Polarization: -121.82 SS G_CDS: -7.38 Total: -129.20 kcal Atomic # 8 Polarization: -17.64 SS G_CDS: -0.14 Total: -17.78 kcal Atomic # 14 Polarization: 46.70 SS G_CDS: 2.03 Total: 48.73 kcal Total: -74.48 0.05 -74.42 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001179773459.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.118 kcal (2) G-P(sol) polarization free energy of solvation -74.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds