Wall clock time and date at job start Tue Mar 31 2020 19:01:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.34258 * 126.52488 * 2 1 4 4 C 1.34049 * 108.22958 * 180.02562 * 3 2 1 5 5 C 1.50697 * 125.38207 * 179.97438 * 4 3 2 6 6 C 1.53000 * 117.49504 * 351.40380 * 5 4 3 7 7 C 1.52997 * 60.00347 * 107.48912 * 6 5 4 8 8 N 1.29933 * 109.24176 * 0.26086 * 4 3 2 9 9 C 1.36071 * 108.47528 * 359.58059 * 8 4 3 10 10 C 1.47425 * 126.44713 * 180.16351 * 9 8 4 11 11 O 1.21614 * 119.99894 * 180.29655 * 10 9 8 12 12 N 1.34774 * 120.00029 * 0.29600 * 10 9 8 13 13 C 1.46499 * 119.99966 * 179.97438 * 12 10 9 14 14 C 1.52999 * 109.47380 * 180.02562 * 13 12 10 15 15 C 1.52997 * 109.47454 * 179.97438 * 14 13 12 16 16 C 1.52992 * 109.47274 * 179.97438 * 15 14 13 17 17 C 1.53003 * 109.47304 * 180.02562 * 16 15 14 18 18 C 1.52999 * 109.47051 * 179.97438 * 17 16 15 19 19 N 1.46499 * 109.46948 * 179.97438 * 18 17 16 20 20 C 1.36940 * 120.00191 * 180.02562 * 19 18 17 21 21 H 1.07997 * 119.99938 * 359.97438 * 20 19 18 22 22 C 1.38810 * 120.00145 * 180.02562 * 20 19 18 23 23 N 1.31625 * 120.00040 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 119.99901 * 179.97438 * 22 20 19 25 25 H 1.48492 * 109.47270 * 359.97438 * 24 22 20 26 26 H 1.48507 * 109.47366 * 120.00019 * 24 22 20 27 27 H 1.48508 * 109.46984 * 239.99285 * 24 22 20 28 28 H 1.08997 * 109.47237 * 359.97438 * 1 2 3 29 29 H 1.08998 * 109.47117 * 119.98005 * 1 2 3 30 30 H 1.09001 * 109.47146 * 239.97568 * 1 2 3 31 31 H 1.08990 * 115.56356 * 205.71551 * 5 4 3 32 32 H 1.09002 * 117.49696 * 214.98125 * 6 5 4 33 33 H 1.09002 * 117.50343 * 0.02562 * 6 5 4 34 34 H 1.08999 * 117.49685 * 252.51237 * 7 6 5 35 35 H 1.08997 * 117.50044 * 107.48590 * 7 6 5 36 36 H 0.96994 * 120.00190 * 0.02562 * 12 10 9 37 37 H 1.09008 * 109.46939 * 300.00543 * 13 12 10 38 38 H 1.08999 * 109.47221 * 59.99687 * 13 12 10 39 39 H 1.08996 * 109.46912 * 300.00231 * 14 13 12 40 40 H 1.09003 * 109.46861 * 59.99831 * 14 13 12 41 41 H 1.08996 * 109.47390 * 300.00110 * 15 14 13 42 42 H 1.09008 * 109.46624 * 60.00081 * 15 14 13 43 43 H 1.09008 * 109.47515 * 300.00236 * 16 15 14 44 44 H 1.08999 * 109.47392 * 59.99837 * 16 15 14 45 45 H 1.08996 * 109.47123 * 300.00196 * 17 16 15 46 46 H 1.08995 * 109.47125 * 59.99953 * 17 16 15 47 47 H 1.09001 * 109.47464 * 299.99635 * 18 17 16 48 48 H 1.09000 * 109.47397 * 60.00436 * 18 17 16 49 49 H 0.97004 * 120.00266 * 359.97438 * 19 18 17 50 50 H 0.96994 * 119.99983 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3060 1.0789 0.0000 4 6 3.5788 0.6581 -0.0006 5 6 4.7929 1.5507 -0.0013 6 6 4.5671 3.0503 -0.2043 7 6 4.9610 2.5158 1.1741 8 7 3.6002 -0.6410 -0.0065 9 6 2.3170 -1.0935 -0.0005 10 6 1.8854 -2.5032 -0.0007 11 8 0.7003 -2.7762 -0.0004 12 7 2.8041 -3.4893 -0.0013 13 6 2.3752 -4.8901 -0.0010 14 6 3.6051 -5.8001 -0.0011 15 6 3.1572 -7.2630 -0.0001 16 6 4.3871 -8.1730 -0.0009 17 6 3.9391 -9.6360 -0.0006 18 6 5.1691 -10.5459 -0.0020 19 7 4.7402 -11.9467 -0.0010 20 6 5.6736 -12.9487 -0.0015 21 1 6.7260 -12.7062 -0.0030 22 6 5.2672 -14.2759 -0.0011 23 7 3.9846 -14.5715 0.0002 24 14 6.5406 -15.6426 -0.0025 25 1 7.9023 -15.0504 -0.0046 26 1 6.3672 -16.4821 1.2101 27 1 6.3644 -16.4821 -1.2149 28 1 -0.3633 1.0276 0.0005 29 1 -0.3633 -0.5135 -0.8901 30 1 -0.3633 -0.5142 0.8898 31 1 5.6964 1.1155 -0.4283 32 1 5.3220 3.6016 -0.7649 33 1 3.5403 3.3913 -0.3369 34 1 4.1934 2.5049 1.9478 35 1 5.9751 2.7153 1.5203 36 1 3.7493 -3.2715 -0.0012 37 1 1.7780 -5.0869 0.8895 38 1 1.7768 -5.0871 -0.8905 39 1 4.2025 -5.6033 -0.8913 40 1 4.2030 -5.6029 0.8887 41 1 2.5599 -7.4596 0.8902 42 1 2.5590 -7.4604 -0.8898 43 1 4.9840 -7.9764 -0.8916 44 1 4.9856 -7.9757 0.8884 45 1 3.3420 -9.8329 0.8898 46 1 3.3408 -9.8330 -0.8901 47 1 5.7658 -10.3490 -0.8927 48 1 5.7678 -10.3491 0.8873 49 1 3.7949 -12.1646 0.0007 50 1 3.7006 -15.4989 0.0008 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001179940026.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:01:45 Heat of formation + Delta-G solvation = -6.989813 kcal Electronic energy + Delta-G solvation = -26681.890992 eV Core-core repulsion = 22710.967252 eV Total energy + Delta-G solvation = -3970.923741 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.96639 -39.83046 -37.88285 -36.82403 -35.44692 -35.30694 -33.90266 -32.74872 -31.87580 -30.04506 -28.28967 -26.91457 -24.96384 -23.98331 -23.26272 -23.03504 -22.26125 -21.57268 -21.13175 -20.61809 -20.22434 -18.18539 -17.50369 -16.99798 -16.93764 -16.25231 -16.19305 -15.88338 -15.22431 -15.13377 -14.64200 -14.36710 -14.24145 -13.97390 -13.56302 -13.44984 -13.36325 -13.12763 -12.93963 -12.88314 -12.68832 -12.31841 -12.27720 -12.08007 -11.69806 -11.34670 -11.32617 -11.30399 -11.24328 -11.17189 -10.89644 -10.71112 -10.70665 -10.51956 -10.30693 -10.22386 -9.91621 -9.61952 -9.44825 -9.09828 -8.82474 -6.86047 -5.71851 -3.00097 0.60448 1.45365 1.88584 2.74435 2.88486 3.07827 3.28378 3.46258 3.51490 3.54127 3.98208 4.12928 4.17258 4.22961 4.47325 4.57247 4.63714 4.67319 4.79332 4.91540 4.94652 5.00576 5.02330 5.09583 5.26401 5.28956 5.37068 5.37779 5.38485 5.43613 5.50666 5.57268 5.58724 5.67041 5.74102 5.77182 5.97727 6.00121 6.12501 6.17627 6.37975 6.38189 6.44891 6.52575 6.91919 6.95379 6.99402 7.24283 7.74805 7.82898 8.47638 9.58288 10.18193 10.52708 11.51421 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.024429 B = 0.001270 C = 0.001213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.912995 B =22037.990292 C =23068.562693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.042 3.958 3 O -0.195 6.195 4 C 0.226 3.774 5 C -0.074 4.074 6 C -0.162 4.162 7 C -0.157 4.157 8 N -0.453 5.453 9 C -0.077 4.077 10 C 0.602 3.398 11 O -0.534 6.534 12 N -0.712 5.712 13 C 0.117 3.883 14 C -0.131 4.131 15 C -0.115 4.115 16 C -0.113 4.113 17 C -0.126 4.126 18 C 0.152 3.848 19 N -0.735 5.735 20 C -0.238 4.238 21 H 0.070 0.930 22 C -0.016 4.016 23 N -0.935 5.935 24 Si 0.907 3.093 25 H -0.280 1.280 26 H -0.292 1.292 27 H -0.292 1.292 28 H 0.079 0.921 29 H 0.101 0.899 30 H 0.101 0.899 31 H 0.149 0.851 32 H 0.112 0.888 33 H 0.104 0.896 34 H 0.100 0.900 35 H 0.113 0.887 36 H 0.409 0.591 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.070 0.930 40 H 0.069 0.931 41 H 0.065 0.935 42 H 0.065 0.935 43 H 0.060 0.940 44 H 0.060 0.940 45 H 0.060 0.940 46 H 0.060 0.940 47 H 0.016 0.984 48 H 0.016 0.984 49 H 0.383 0.617 50 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.099 41.787 0.362 41.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.014 4.014 3 O -0.082 6.082 4 C 0.017 3.983 5 C -0.093 4.093 6 C -0.200 4.200 7 C -0.195 4.195 8 N -0.182 5.182 9 C -0.197 4.197 10 C 0.387 3.613 11 O -0.411 6.411 12 N -0.363 5.363 13 C -0.006 4.006 14 C -0.169 4.169 15 C -0.154 4.154 16 C -0.152 4.152 17 C -0.164 4.164 18 C 0.024 3.976 19 N -0.379 5.379 20 C -0.369 4.369 21 H 0.088 0.912 22 C -0.212 4.212 23 N -0.584 5.584 24 Si 0.738 3.262 25 H -0.206 1.206 26 H -0.219 1.219 27 H -0.219 1.219 28 H 0.098 0.902 29 H 0.119 0.881 30 H 0.119 0.881 31 H 0.167 0.833 32 H 0.130 0.870 33 H 0.122 0.878 34 H 0.119 0.881 35 H 0.131 0.869 36 H 0.245 0.755 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.084 0.916 42 H 0.084 0.916 43 H 0.079 0.921 44 H 0.079 0.921 45 H 0.079 0.921 46 H 0.079 0.921 47 H 0.034 0.966 48 H 0.034 0.966 49 H 0.217 0.783 50 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -3.246 41.100 0.349 41.230 hybrid contribution 0.346 -0.485 -0.021 0.596 sum -2.899 40.615 0.328 40.720 Atomic orbital electron populations 1.20483 0.82258 1.03969 1.05718 1.23757 0.95131 0.83208 0.99352 1.84291 1.17851 1.36277 1.69830 1.24949 0.83104 0.89489 1.00728 1.20294 0.92195 0.89562 1.07203 1.23134 1.04148 0.92945 0.99734 1.23159 1.04229 1.00381 0.91701 1.70672 1.21472 1.08769 1.17309 1.21499 0.88802 0.95619 1.13769 1.16670 0.85511 0.82519 0.76600 1.90821 1.16204 1.83343 1.50765 1.45829 1.10274 1.06150 1.74050 1.21520 0.97597 0.78649 1.02784 1.21832 0.96889 0.95244 1.02949 1.21512 0.98678 0.92532 1.02634 1.21501 0.97010 0.94710 1.01938 1.21728 0.99136 0.93584 1.01989 1.20661 0.94144 0.85234 0.97538 1.42408 1.06591 0.99501 1.89437 1.19313 0.89154 0.86229 1.42222 0.91163 1.24749 0.96037 0.97195 1.03220 1.69677 1.13055 1.17521 1.58113 0.86110 0.80501 0.82398 0.77171 1.20565 1.21878 1.21883 0.90224 0.88070 0.88084 0.83323 0.86999 0.87803 0.88115 0.86885 0.75544 0.91072 0.91060 0.91178 0.91183 0.91596 0.91602 0.92084 0.92080 0.92089 0.92092 0.96571 0.96582 0.78340 0.93611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.43 9.13 36.00 0.33 -0.10 16 2 C 0.04 0.38 7.44 -35.08 -0.26 0.12 16 3 O -0.20 -1.67 10.40 6.51 0.07 -1.60 16 4 C 0.23 1.89 7.80 -13.08 -0.10 1.79 16 5 C -0.07 -0.36 6.33 -91.77 -0.58 -0.94 16 6 C -0.16 -0.49 10.16 -26.73 -0.27 -0.76 16 7 C -0.16 -0.51 10.23 -26.73 -0.27 -0.78 16 8 N -0.45 -4.61 11.06 -7.65 -0.08 -4.69 16 9 C -0.08 -0.82 6.99 -83.02 -0.58 -1.40 16 10 C 0.60 6.97 7.81 -12.52 -0.10 6.87 16 11 O -0.53 -7.21 15.61 5.27 0.08 -7.13 16 12 N -0.71 -7.05 5.55 -61.38 -0.34 -7.39 16 13 C 0.12 1.12 5.67 -4.04 -0.02 1.10 16 14 C -0.13 -1.15 5.33 -26.73 -0.14 -1.29 16 15 C -0.12 -1.21 5.21 -26.74 -0.14 -1.35 16 16 C -0.11 -1.44 5.21 -26.73 -0.14 -1.58 16 17 C -0.13 -2.10 5.33 -26.73 -0.14 -2.24 16 18 C 0.15 3.20 6.26 -4.04 -0.03 3.17 16 19 N -0.74 -19.61 5.60 -59.91 -0.34 -19.95 16 20 C -0.24 -6.94 9.99 -15.06 -0.15 -7.09 16 21 H 0.07 1.99 7.83 -52.49 -0.41 1.58 16 22 C -0.02 -0.49 5.50 -17.43 -0.10 -0.58 16 23 N -0.93 -29.09 13.06 55.49 0.72 -28.37 16 24 Si 0.91 22.93 29.55 -169.99 -5.02 17.91 16 25 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 26 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 27 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 28 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.10 0.64 8.08 -51.93 -0.42 0.23 16 30 H 0.10 0.64 8.07 -51.93 -0.42 0.22 16 31 H 0.15 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.11 0.16 8.14 -51.93 -0.42 -0.27 16 33 H 0.10 0.36 7.94 -51.93 -0.41 -0.05 16 34 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.11 0.19 8.14 -51.93 -0.42 -0.23 16 36 H 0.41 3.57 8.20 -40.82 -0.33 3.23 16 37 H 0.07 0.72 8.14 -51.92 -0.42 0.29 16 38 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.07 0.69 8.14 -51.92 -0.42 0.27 16 43 H 0.06 0.75 8.14 -51.92 -0.42 0.33 16 44 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 46 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 47 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 48 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 49 H 0.38 10.67 7.67 -40.82 -0.31 10.35 16 50 H 0.25 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 421.07 15.07 6.35 6.35 Total: -1.00 -34.96 421.07 -9.89 -44.85 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: -8.63 Total: 5.10 kcal Atomic # 6 Polarization: -2.38 SS G_CDS: -2.70 Total: -5.08 kcal Atomic # 7 Polarization: -60.36 SS G_CDS: -0.04 Total: -60.39 kcal Atomic # 8 Polarization: -8.88 SS G_CDS: 0.15 Total: -8.73 kcal Atomic # 14 Polarization: 22.93 SS G_CDS: -5.02 Total: 17.91 kcal Total LS contribution 6.35 Total: 6.35 kcal Total: -34.96 -9.89 -44.85 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001179940026.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.860 kcal (2) G-P(sol) polarization free energy of solvation -34.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds